Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011300

Physical Location & Seq

Genomic Coordinates Forward (+)

231471 .. 234315

Gene Structure 2845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G002600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGATGAAGGTTTTGCGCCTCTTGTCCTCCTCCAGGAACCAGTTCCCCACTAGAGGTGCTTTATCAATGCATGCTTATACACATAGCAGCAGCTTTTCAACTGCCAGTAAGAGTTTTTCTGTTAAAGGAACTAGTGCTCATAATGTATTTGCTTCTTTTAATATCTTCAAAGGAAAAGCTGCACTCTCTTTGAATCCTGTTCTCCCAACATTCACCAAATTGGAATCTGGAAATCTTGTAGTTAGTCGGCGTGGTGTTGTCATGTTGAAGTTCACTCCTGCCATTGGCGAGCGCAAGTATGACTGGGAAAAGAACCAGGTATTTGCTTTATCAGCAACGGAGGTTGGCTCTCTGATAAGCTTGGGTCCCAAGGATTCTTGTGAACTCTTTCATGACCCCTCAATGAAATCAAGTAATGCTGGTCAAGTGAGGAAGAGCTTGTCAATTAAGTGTCATGCAGATGGCAGTGGCTACTTGGTTTCTTTGGCTGTTGTGAACAACCTCCTCAAAACCAAAGAGAATTTCATAGTTCCTGTCACAGCTGCTGAATTTGCTGTTATGAAGACTGCTTGCAGTTTTGTGCTGCCCCACATCATGGGTTGGGATAGGTTGATGAGCAATATGCCGACAGTTGTAGGAGGGCAACAATCAAAAGTGGTTCCACAACTTTTGGATGAGTGGGATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Whirly

Protein Analysis

230

Amino Acids

25.01

Weight (kDa)

9.77

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71260
fragaria_vesca	FvH4_2g00250 FvH4_2g00250
malus_domestica	MD05G1005800.v1.1
prunus_persica	Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1
pyrus_communis	pycom05g00090
rosa_chinensis	RchiOBHm_Chr6g0249551
rosa_laevigata	RLG00000015563
rosa_multiflora	Rmu_sc0006936.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217560
rosa_rugosa	Rorug05G0493400
rosa_samantha	Rh6AG003200 Rh6AG171000 Rh6BG006900 Rh6CG002400 Rh6DG002200
rosa_wichuraiana	Rw6G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	595
AcsI	RAATTY	2 cut(s)	520, 548
AfiI	CCNNNNNNNGG	4 cut(s)	33, 53, 284, 595
AgsI	TTSAA	4 cut(s)	99, 169, 193, 268
AhlI	ACTAGT	1 cut(s)	131
AjnI	CCWGG	2 cut(s)	32, 315
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	5 cut(s)	93, 179, 360, 438, 542
AluI	AGCT	5 cut(s)	93, 179, 360, 438, 542
Alw21I	GWGCWC	1 cut(s)	139
AlwNI	CAGNNNCTG	1 cut(s)	545
ApeKI	GCWGC	5 cut(s)	87, 90, 179, 542, 583
ApoI	RAATTY	2 cut(s)	520, 548
Asp700I	GAANNNNTTC	2 cut(s)	41, 387
AspLEI	GCGC	2 cut(s)	18, 294
AspS9I	GGNCC	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	5 cut(s)	99, 102, 166, 529, 570
BccI	CCATC	1 cut(s)	455
BciT130I	CCWGG	2 cut(s)	34, 317
BcuI	ACTAGT	1 cut(s)	131
BfaI	CTAG	2 cut(s)	51, 132
BisI	GCNGC	5 cut(s)	88, 91, 180, 543, 584
BlsI	GCNGC	5 cut(s)	89, 92, 181, 544, 585
Bme1390I	CCNGG	2 cut(s)	34, 317
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	4 cut(s)	38, 366, 367, 660
BmrFI	CCNGG	2 cut(s)	34, 317
BmrI	ACTGGG	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	569
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpmI	CTGGAG	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	4 cut(s)	33, 53, 284, 595
Bse1I	ACTGG	3 cut(s)	40, 105, 308
BseBI	CCWGG	2 cut(s)	34, 317
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	679
BseLI	CCNNNNNNNGG	4 cut(s)	33, 53, 284, 595
BseNI	ACTGG	3 cut(s)	40, 105, 308
BseRI	GAGGAG	2 cut(s)	19, 494
BseXI	GCAGC	5 cut(s)	99, 102, 166, 529, 570
BsgI	GTGCAG	1 cut(s)	165
BsiHKAI	GWGCWC	1 cut(s)	139
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	4 cut(s)	33, 53, 284, 595
BsmFI	GGGAC	1 cut(s)	351
Bsp1286I	GDGCHC	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	4 cut(s)	38, 366, 367, 660
BspQI	GCTCTTC	1 cut(s)	428
BsrI	ACTGG	3 cut(s)	40, 105, 308
BssECI	CCNNGG	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	369
Bst2UI	CCWGG	2 cut(s)	34, 317
Bst4CI	ACNGT	1 cut(s)	631
Bst6I	CTCTTC	1 cut(s)	428
BstC8I	GCNNGC	3 cut(s)	72, 290, 571
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	679
BstHHI	GCGC	2 cut(s)	18, 294
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 551
BstNI	CCWGG	2 cut(s)	34, 317
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	32, 315
BstV1I	GCAGC	5 cut(s)	99, 102, 166, 529, 570
BstV2I	GAAGAC	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	679
BtsI	GCAGTG	1 cut(s)	472
BtsIMutI	CAGTG	1 cut(s)	472
Cac8I	GCNNGC	3 cut(s)	72, 290, 571
CaiI	CAGNNNCTG	1 cut(s)	545
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	2 cut(s)	18, 294
Cfr13I	GGNCC	1 cut(s)	365
CsiI	ACCWGGT	1 cut(s)	315
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	5 cut(s)	71, 262, 392, 455, 595
CviJI	RGCY	8 cut(s)	93, 179, 348, 360, 438, 471, 488, 542
CviKI_1	RGCY	8 cut(s)	93, 179, 348, 360, 438, 471, 488, 542
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	365
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	32, 315
EcoT14I	CCWWGG	1 cut(s)	369
EcoT22I	ATGCAT	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	5 cut(s)	74, 265, 395, 458, 598
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	5 cut(s)	70, 261, 391, 454, 594
Fnu4HI	GCNGC	5 cut(s)	88, 91, 180, 543, 584
FokI	GGATG	1 cut(s)	686
Fsp4HI	GCNGC	5 cut(s)	88, 91, 180, 543, 584
FspBI	CTAG	2 cut(s)	51, 132
GlaI	GCGC	2 cut(s)	17, 293
GluI	GCNGC	5 cut(s)	88, 91, 180, 543, 584
GsuI	CTGGAG	1 cut(s)	16
HhaI	GCGC	2 cut(s)	18, 294
Hin1II	CATG	5 cut(s)	74, 265, 395, 458, 598
Hin6I	GCGC	2 cut(s)	16, 292
HinP1I	GCGC	2 cut(s)	16, 292
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	3 cut(s)	193, 224, 374
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	3 cut(s)	273, 383, 496
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	2 cut(s)	228, 392
Hpy8I	GTNNAC	3 cut(s)	273, 383, 496
HpyCH4III	ACNGT	1 cut(s)	631
HpyCH4V	TGCA	4 cut(s)	70, 182, 458, 573
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 551
Hsp92II	CATG	5 cut(s)	74, 265, 395, 458, 598
HspAI	GCGC	2 cut(s)	16, 292
KflI	GGGWCCC	1 cut(s)	365
LguI	GCTCTTC	1 cut(s)	428
Lsp1109I	GCAGC	5 cut(s)	99, 102, 166, 529, 570
MabI	ACCWGGT	1 cut(s)	315
MaeI	CTAG	2 cut(s)	51, 132
MaeIII	GTNAC	1 cut(s)	535
MboII	GAAGA	3 cut(s)	157, 445, 574
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	4 cut(s)	218, 444, 520, 548
Mph1103I	ATGCAT	1 cut(s)	72
MroXI	GAANNNNTTC	2 cut(s)	41, 387
MseI	TTAA	3 cut(s)	123, 159, 447
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	542
MspR9I	CCNGG	2 cut(s)	34, 317
MvaI	CCWGG	2 cut(s)	34, 317
MwoI	GCNNNNNNNGC	2 cut(s)	332, 551
NlaIII	CATG	5 cut(s)	74, 265, 395, 458, 598
NlaIV	GGNNCC	4 cut(s)	38, 366, 367, 660
NmuCI	GTSAC	1 cut(s)	535
NsiI	ATGCAT	1 cut(s)	72
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PagI	TCATGA	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	428
PdmI	GAANNNNTTC	2 cut(s)	41, 387
PfeI	GAWTC	3 cut(s)	193, 224, 374
PflMI	CCANNNNNTGG	1 cut(s)	595
PfoI	TCCNGGA	1 cut(s)	32
PkrI	GCNGC	5 cut(s)	89, 92, 181, 544, 585
PpuMI	RGGWCCY	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	32, 315
PspGI	CCWGG	2 cut(s)	32, 315
PspN4I	GGNNCC	4 cut(s)	38, 366, 367, 660
PspPI	GGNCC	1 cut(s)	365
PspPPI	RGGWCCY	1 cut(s)	365
PstNI	CAGNNNCTG	1 cut(s)	545
PvuII	CAGCTG	1 cut(s)	542
RseI	CAYNNNNRTG	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	428
SaqAI	TTAA	3 cut(s)	123, 159, 447
SatI	GCNGC	5 cut(s)	88, 91, 180, 543, 584
Sau96I	GGNCC	1 cut(s)	365
ScrFI	CCNGG	2 cut(s)	34, 317
SduI	GDGCHC	1 cut(s)	139
SexAI	ACCWGGT	1 cut(s)	315
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	459
SpeI	ACTAGT	1 cut(s)	131
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	4 cut(s)	218, 444, 520, 548
SspMI	CTAG	2 cut(s)	51, 132
StyD4I	CCNGG	2 cut(s)	32, 315
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	631
TasI	AATT	4 cut(s)	218, 444, 520, 548
TfiI	GAWTC	3 cut(s)	193, 224, 374
Tru1I	TTAA	3 cut(s)	123, 159, 447
Tru9I	TTAA	3 cut(s)	123, 159, 447
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	5 cut(s)	87, 90, 179, 542, 583
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	5 cut(s)	20, 380, 419, 514, 575
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	472
Van91I	CCANNNNNTGG	1 cut(s)	595
VpaK11BI	GGWCC	1 cut(s)	365
XagI	CCTNNNNNAGG	1 cut(s)	31
XapI	RAATTY	2 cut(s)	520, 548
XceI	RCATGY	1 cut(s)	74
XmnI	GAANNNNTTC	2 cut(s)	41, 387
XspI	CTAG	2 cut(s)	51, 132
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.