Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011300

Physical Location & Seq

Genomic Coordinates Forward (+)

1472490 .. 1475390

Gene Structure 2901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1005800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTTGAAGGTGTTGCGCGTCTTGTCCTCTTCCACCACGAAATTCAGGAGCCATTTCTGCACTAGAGATGCTTCATCAATGTATGCTTATACTCATATCACCAGATTTTCAACTGCCACTCAGAAATTTTCTGTTAAAGGTCCCAGTTCTCATCAAGTATATGCTTCTTTTGATATCTTCAAGGGCAAAGCTGCACTCTCTTTGACTCCTGTTCTTCCAACATTCACTAAATTGGAATCTGGAAGTCTTGTAGTTGATCGGCGTGGTTCTGTCATGTTGAAGTTCACTCCTGCCATTGGTGAACGTAAGTATGACTGGGAAAAGAGACAGATGTTTGCTTTATCAGCTACAGAGGTTGGCGCTCTGATAAGCTTGGGTTCCAATGATTCTTGTGAACTATTTCATGATCCCTCAATGAAATCAAGTAATGCTGGTCAAGTGAGGAAGAGCTTATCGATTAAGCCTCATGCGGATGGCAGTGGCTACTTTGTTTCCTTAACTGTTGTCAACAACCTGCTAAAGACCAGAGAGAGTTTCTCAGTTCCTGTCACGACTGCTGAATTTGCTGTTATGAAGACTGCTTGCAGTTTTGCATTGCCCCACATCATGGGTTGGGATAGATTGACGAACAAGATGCCAGCAGGTGGTGGTGGTGGTGGAGGAGGGCAAGAATCAAAGGCGGTTCCACAGCTTTTGGAGGAGTGGGATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Whirly

Protein Analysis

238

Amino Acids

25.86

Weight (kDa)

9.63

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Whirly	PF08536	59 - 193	1.3e-60	Whirly transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011300)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71260
fragaria_vesca	FvH4_2g00250 FvH4_2g00250
malus_domestica	MD05G1005800.v1.1
prunus_persica	Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1 Prupe.8G002600_v2.0.a1
pyrus_communis	pycom05g00090
rosa_chinensis	RchiOBHm_Chr6g0249551
rosa_laevigata	RLG00000015563
rosa_multiflora	Rmu_sc0006936.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217560
rosa_rugosa	Rorug05G0493400
rosa_samantha	Rh6AG003200 Rh6AG171000 Rh6BG006900 Rh6CG002400 Rh6DG002200
rosa_wichuraiana	Rw6G000370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	632
Acc36I	ACCTGC	2 cut(s)	522, 632
AccB7I	CCANNNNNTGG	2 cut(s)	607, 644
AccII	CGCG	1 cut(s)	18
AciI	CCGC	2 cut(s)	470, 680
AclWI	GGATC	1 cut(s)	401
AcsI	RAATTY	3 cut(s)	41, 125, 560
AfiI	CCNNNNNNNGG	3 cut(s)	296, 607, 644
AgsI	TTSAA	4 cut(s)	7, 111, 181, 280
AluBI	AGCT	5 cut(s)	191, 347, 372, 450, 691
AluI	AGCT	5 cut(s)	191, 347, 372, 450, 691
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	401
AlwNI	CAGNNNCTG	1 cut(s)	545
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	3 cut(s)	41, 125, 560
Asp700I	GAANNNNTTC	1 cut(s)	399
AspLEI	GCGC	2 cut(s)	18, 362
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	91, 311
AvaII	GGWCC	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	581
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	467
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BcoDI	GTCTC	1 cut(s)	319
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	363
BfuAI	ACCTGC	2 cut(s)	522, 632
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	4 cut(s)	50, 142, 379, 684
BmrI	ACTGGG	2 cut(s)	138, 325
BmsI	GCATC	2 cut(s)	58, 624
BmuI	ACTGGG	2 cut(s)	138, 325
BpiI	GAAGAC	1 cut(s)	581
BplI	GAGNNNNNCTC	2 cut(s)	521, 553
Bsa29I	ATCGAT	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 607, 644
Bse1I	ACTGG	2 cut(s)	144, 320
Bse3DI	GCAATG	1 cut(s)	593
BseCI	ATCGAT	1 cut(s)	455
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	3 cut(s)	296, 607, 644
BseMI	GCAATG	1 cut(s)	593
BseMII	CTCAG	2 cut(s)	134, 552
BseNI	ACTGG	2 cut(s)	144, 320
BseRI	GAGGAG	2 cut(s)	675, 713
BseXI	GCAGC	1 cut(s)	178
BsgI	GTGCAG	2 cut(s)	43, 177
Bsh1236I	CGCG	1 cut(s)	18
BshVI	ATCGAT	1 cut(s)	455
BslFI	GGGAC	1 cut(s)	126
BslI	CCNNNNNNNGG	3 cut(s)	296, 607, 644
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	256, 406
BspACI	CCGC	2 cut(s)	470, 680
BspCNI	CTCAG	2 cut(s)	133, 551
BspDI	ATCGAT	1 cut(s)	455
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	4 cut(s)	50, 142, 379, 684
BspMI	ACCTGC	2 cut(s)	522, 632
BspPI	GGATC	1 cut(s)	401
BspQI	GCTCTTC	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	593
BsrI	ACTGG	2 cut(s)	144, 320
BssMI	GATC	2 cut(s)	256, 406
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	2 cut(s)	34, 440
BstC8I	GCNNGC	2 cut(s)	583, 639
BstDEI	CTNAG	2 cut(s)	120, 538
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	18
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	18, 362
BstKTI	GATC	2 cut(s)	259, 409
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	256, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 344, 563
BstSFI	CTRYAG	1 cut(s)	348
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	581
Bsu15I	ATCGAT	1 cut(s)	455
BsuTUI	ATCGAT	1 cut(s)	455
BtsCI	GGATG	1 cut(s)	478
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	484
BveI	ACCTGC	2 cut(s)	522, 632
Cac8I	GCNNGC	2 cut(s)	583, 639
CaiI	CAGNNNCTG	1 cut(s)	545
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	2 cut(s)	18, 362
Cfr13I	GGNCC	1 cut(s)	140
ClaI	ATCGAT	1 cut(s)	455
CseI	GACGC	1 cut(s)	7
CspCI	CAANNNNNGTGG	2 cut(s)	675, 710
CviAII	CATG	4 cut(s)	274, 404, 467, 607
CviJI	RGCY	8 cut(s)	51, 191, 347, 372, 450, 463, 483, 691
CviKI_1	RGCY	8 cut(s)	51, 191, 347, 372, 450, 463, 483, 691
DdeI	CTNAG	2 cut(s)	120, 538
DpnI	GATC	2 cut(s)	258, 408
DpnII	GATC	2 cut(s)	256, 406
Eam1104I	CTCTTC	2 cut(s)	34, 440
EarI	CTCTTC	2 cut(s)	34, 440
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	140
EcoRV	GATATC	1 cut(s)	175
FaeI	CATG	4 cut(s)	277, 407, 470, 610
FaqI	GGGAC	1 cut(s)	126
FatI	CATG	4 cut(s)	273, 403, 466, 606
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	2 cut(s)	17, 361
GluI	GCNGC	1 cut(s)	192
HaeII	RGCGCY	1 cut(s)	363
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	2 cut(s)	18, 362
Hin1II	CATG	4 cut(s)	277, 407, 470, 610
Hin6I	GCGC	2 cut(s)	16, 360
HinP1I	GCGC	2 cut(s)	16, 360
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	4 cut(s)	205, 236, 386, 671
HphI	GGTGA	2 cut(s)	91, 311
Hpy166II	GTNNAC	4 cut(s)	285, 302, 395, 508
Hpy188I	TCNGA	2 cut(s)	123, 366
Hpy188III	TCNNGA	4 cut(s)	46, 240, 404, 550
Hpy8I	GTNNAC	4 cut(s)	285, 302, 395, 508
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	4 cut(s)	60, 194, 585, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 344, 563
HpyF3I	CTNAG	2 cut(s)	120, 538
HpySE526I	ACGT	1 cut(s)	304
Hsp92II	CATG	4 cut(s)	277, 407, 470, 610
HspAI	GCGC	2 cut(s)	16, 360
Kzo9I	GATC	2 cut(s)	256, 406
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	1 cut(s)	48
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	58, 624
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	2 cut(s)	258, 408
MboI	GATC	2 cut(s)	256, 406
MboII	GAAGA	5 cut(s)	21, 169, 206, 457, 586
MluCI	AATT	4 cut(s)	41, 125, 230, 560
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	8 cut(s)	37, 346, 421, 435, 474, 653, 656, 691
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	3 cut(s)	135, 459, 497
MslI	CAYNNNNRTG	1 cut(s)	471
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	57, 344, 563
NdeII	GATC	2 cut(s)	256, 406
NlaIII	CATG	4 cut(s)	277, 407, 470, 610
NlaIV	GGNNCC	4 cut(s)	50, 142, 379, 684
NmuCI	GTSAC	1 cut(s)	547
PagI	TCATGA	1 cut(s)	403
PaqCI	CACCTGC	1 cut(s)	632
PciSI	GCTCTTC	1 cut(s)	440
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	236, 386, 671
PflMI	CCANNNNNTGG	2 cut(s)	607, 644
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	140
PspN4I	GGNNCC	4 cut(s)	50, 142, 379, 684
PspPI	GGNCC	1 cut(s)	140
PspPPI	RGGWCCY	1 cut(s)	140
PstNI	CAGNNNCTG	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	471
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	3 cut(s)	135, 459, 497
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	256, 406
Sau96I	GGNCC	1 cut(s)	140
SchI	GAGTC	1 cut(s)	199
SfaNI	GCATC	2 cut(s)	58, 624
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	4 cut(s)	41, 125, 230, 560
SsiI	CCGC	2 cut(s)	470, 680
SspMI	CTAG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	455
TasI	AATT	4 cut(s)	41, 125, 230, 560
TfiI	GAWTC	3 cut(s)	236, 386, 671
Tru1I	TTAA	3 cut(s)	135, 459, 497
Tru9I	TTAA	3 cut(s)	135, 459, 497
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	4 cut(s)	63, 392, 431, 587
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	2 cut(s)	607, 644
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	3 cut(s)	41, 125, 560
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.