AT1G71380

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006215
Physical Location & Seq
Reverse (-)
26899765 .. 26901976
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71380.1

Sequence Viewer

Length: 1455 bp
ATGACTTCTCTTTTCTTCTTTGTTCTCCTTTTCTCGTCTCTTCTCATAAGCAATGGCGATGCCAACCCAAATTACAAAGAAGCTCTCTCCAAGTCATTGCTCTTCTTCCAAGGTCAGCGATCTGGTCCTCTTCCTAGAGGCCAACAAATTTCCTGGAGGGCTAGCTCTGGCCTTTCCGATGGCTCTGCTGCTCATGTGGACTTAACCGGCGGGTACTATGACGCAGGAGACAACGTCAAGTTCAATTTACCAATGGCGTTTACCACCACAATGCTCTCATGGAGCGCACTGGAATACGGTAAACGGATGGGTCCTGAGCTGGAAAATGCACGTGTGAACATCCGTTGGGCCACAGATTATCTGCTGAAATGTGCCAGAGCCACGCCGGGGAAGCTTTATGTCGGTGTAGGAGATCCTAATGTTGATCACAAATGCTGGGAACGGCCTGAAGACATGGACACACCACGTACAGTTTACTCTGTATCCGCTTCCAATCCTGGTTCTGATGTCGCAGCTGAAACAGCAGCAGCTCTAGCTGCAGCTTCTATGGTTTTCAGAAAAGTTGATTCCAAGTATTCACGTTTGCTGCTCGCAACAGCTAAGGATGTGATGCAGTTTGCCATTCAGTACCAGGGAGCTTACAGTGATTCCCTTTCCTCATCTGTCTGTCCTTTCTACTGCTCCTACTCTGGTTACAAGGACGAGCTAATGTGGGGTGCGTCATGGCTGCTAAGAGCAACGAATAACCCGTATTACGCAAACTTCATAAAATCTTTAGGAGGTGGAGATCAGCCTGACATCTTCAGCTGGGACAATAAATATGCTGGTGCCTATGTTCTTCTCTCACGGAGAGCATTACTTAACAAAGACAGCAACTTTGAACAATATAAGCAAGCAGCTGAGAATTTCATCTGCAAAATCCTTCCAGATTCTCCTTCTTCCTCTACCCAATACACTCAAGGAGGATTAATGTACAAGCTACCTCAAAGCAATCTTCAGTACGTAACCTCCATAACATTCTTGCTCACAACTTACGCCAAATACATGAAAGCCACAAAACACACATTCAATTGCGGAAGCTCCGTTATCGTCCCCAACGCCTTGATAAGCCTATCGAAGCGACAAGTTGATTACATACTCGGAGATAACCCAATCAAAATGTCATACATGGTTGGATTCTCTTCCAATTTCCCTAAGAGAATCCACCACAGAGCATCTTCTCTTCCTTCACACGCACTTCGTTCTCAATCGTTAGGCTGCAATGGTGGATTCCAATCGTTCTACACTCAAAACCCTAACCCTAACATTCTCACCGGAGCAATCGTAGGAGGTCCGAATCAAAACGATGGGTATCCAGATCAGAGAGACGATTATAGTCACGCGGAACCGGCGACTTATATAAACGCCGCCTTCGTCGGACCTTTGGCGTACTTCGCCGCCGGCCGTTCGACTTGA

Protein Analysis

484

Amino Acids

53.27

Weight (kDa)

8.72

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 25 - 474 2.6e-156 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 827
AccII CGCG 1 cut(s) 1382
AciI CCGC 6 cut(s) 210, 486, 1074, 1382, 1407, 1437
AclWI GGATC 1 cut(s) 407
AcoI YGGCCR 1 cut(s) 1441
AcsI RAATTY 2 cut(s) 147, 904
AcuI CTGAAG 3 cut(s) 468, 787, 980
AcvI CACGTG 1 cut(s) 332
AfaI GTAC 6 cut(s) 215, 469, 629, 974, 1001, 1430
AfiI CCNNNNNNNGG 1 cut(s) 387
AflIII ACRYGT 1 cut(s) 331
AgsI TTSAA 3 cut(s) 244, 881, 1069
AjnI CCWGG 3 cut(s) 152, 496, 630
Alw26I GTCTC 3 cut(s) 42, 222, 1359
AlwI GGATC 1 cut(s) 407
AoxI GGCC 5 cut(s) 139, 169, 348, 443, 1441
ApoI RAATTY 2 cut(s) 147, 904
ArsI GACNNNNNNTTYG 2 cut(s) 860, 892
AseI ATTAAT 1 cut(s) 968
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 5 cut(s) 125, 311, 348, 1331, 1418
AsuC2I CCSGG 1 cut(s) 387
AsuHPI GGTGA 1 cut(s) 1303
AsuNHI GCTAGC 1 cut(s) 161
AvaII GGWCC 4 cut(s) 125, 311, 1331, 1418
BanI GGYRCC 1 cut(s) 827
BbrPI CACGTG 1 cut(s) 332
BbsI GAAGAC 1 cut(s) 456
BccI CCATC 3 cut(s) 173, 301, 1340
BceAI ACGGC 2 cut(s) 458, 1428
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 3 cut(s) 154, 498, 632
BciVI GTATCC 2 cut(s) 493, 1362
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 1 cut(s) 387
BcoDI GTCTC 3 cut(s) 42, 222, 1359
BfaI CTAG 3 cut(s) 135, 162, 533
BfmI CTRYAG 1 cut(s) 537
BfuI GTATCC 2 cut(s) 493, 1362
Bme1390I CCNGG 4 cut(s) 154, 387, 498, 632
Bme18I GGWCC 4 cut(s) 125, 311, 1331, 1418
BmgT120I GGNCC 5 cut(s) 125, 311, 348, 1331, 1418
BmiI GGNNCC 3 cut(s) 312, 829, 1386
BmrFI CCNGG 4 cut(s) 154, 387, 498, 632
BmsI GCATC 3 cut(s) 49, 600, 1223
BmtI GCTAGC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 456
BpmI CTGGAG 1 cut(s) 175
Bpu10I CCTNAGC 2 cut(s) 315, 600
BpuEI CTTGAG 1 cut(s) 942
BpuMI CCSGG 1 cut(s) 387
BsaAI YACGTR 3 cut(s) 332, 467, 1003
BsaBI GATNNNNATC 2 cut(s) 1273, 1350
BsaJI CCNNGG 3 cut(s) 109, 386, 631
BsaWI WCCGGW 1 cut(s) 1313
BsaXI ACNNNNNCTCC 6 cut(s) 219, 249, 992, 1022, 1308, 1338
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse118I RCCGGY 3 cut(s) 206, 1387, 1439
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 3 cut(s) 58, 95, 1267
Bse8I GATNNNNATC 2 cut(s) 1273, 1350
BseBI CCWGG 3 cut(s) 154, 498, 632
BseDI CCNNGG 3 cut(s) 109, 386, 631
BseGI GGATG 3 cut(s) 312, 339, 610
BseJI GATNNNNATC 2 cut(s) 1273, 1350
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMI GCAATG 3 cut(s) 58, 95, 1267
BseMII CTCAG 2 cut(s) 306, 891
BseNI ACTGG 1 cut(s) 294
BseX3I CGGCCG 1 cut(s) 1441
BseYI CCCAGC 2 cut(s) 435, 807
Bsh1236I CGCG 1 cut(s) 1382
Bsh1285I CGRYCG 1 cut(s) 1444
BshFI GGCC 5 cut(s) 141, 171, 350, 445, 1443
BshNI GGYRCC 1 cut(s) 827
BsiEI CGRYCG 1 cut(s) 1444
BsiSI CCGG 5 cut(s) 207, 386, 1314, 1388, 1440
BslFI GGGAC 2 cut(s) 824, 1076
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 3 cut(s) 42, 222, 1359
BsmBI CGTCTC 2 cut(s) 42, 1359
BsmFI GGGAC 2 cut(s) 824, 1076
BsnI GGCC 5 cut(s) 141, 171, 350, 445, 1443
Bsp1407I TGTACA 1 cut(s) 972
Bsp143I GATC 5 cut(s) 119, 412, 424, 787, 1357
BspACI CCGC 6 cut(s) 210, 486, 1074, 1382, 1407, 1437
BspANI GGCC 5 cut(s) 141, 171, 350, 445, 1443
BspCNI CTCAG 2 cut(s) 307, 892
BspFNI CGCG 1 cut(s) 1382
BspLI GGNNCC 3 cut(s) 312, 829, 1386
BspMAI CTGCAG 1 cut(s) 541
BspOI GCTAGC 1 cut(s) 165
BspPI GGATC 1 cut(s) 407
BspQI GCTCTTC 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 827
BsrDI GCAATG 3 cut(s) 58, 95, 1267
BsrFI RCCGGY 3 cut(s) 206, 1387, 1439
BsrGI TGTACA 1 cut(s) 972
BsrI ACTGG 1 cut(s) 294
BssAI RCCGGY 3 cut(s) 206, 1387, 1439
BssECI CCNNGG 3 cut(s) 109, 386, 631
BssMI GATC 5 cut(s) 119, 412, 424, 787, 1357
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 3 cut(s) 154, 498, 632
Bst4CI ACNGT 3 cut(s) 299, 472, 644
Bst6I CTCTTC 5 cut(s) 45, 107, 135, 1186, 1227
BstAUI TGTACA 1 cut(s) 972
BstBAI YACGTR 3 cut(s) 332, 467, 1003
BstC8I GCNNGC 4 cut(s) 163, 591, 894, 1441
BstDEI CTNAG 5 cut(s) 315, 600, 731, 900, 1194
BstF5I GGATG 3 cut(s) 312, 339, 610
BstFNI CGCG 1 cut(s) 1382
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 5 cut(s) 122, 415, 427, 790, 1360
BstMAI GTCTC 3 cut(s) 42, 222, 1359
BstMBI GATC 5 cut(s) 119, 412, 424, 787, 1357
BstMCI CGRYCG 1 cut(s) 1444
BstMWI GCNNNNNNNGC 6 cut(s) 391, 521, 533, 536, 1388, 1433
BstNI CCWGG 3 cut(s) 154, 498, 632
BstSCI CCNGG 4 cut(s) 152, 385, 496, 630
BstSFI CTRYAG 1 cut(s) 537
BstSNI TACGTA 1 cut(s) 1003
BstUI CGCG 1 cut(s) 1382
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BstZI CGGCCG 1 cut(s) 1441
BsuI GTATCC 2 cut(s) 493, 1362
BsuRI GGCC 5 cut(s) 141, 171, 350, 445, 1443
BtgZI GCGATG 1 cut(s) 72
BtsCI GGATG 3 cut(s) 312, 339, 610
BtsIMutI CAGTG 2 cut(s) 287, 649
Cac8I GCNNGC 4 cut(s) 163, 591, 894, 1441
CfoI GCGC 1 cut(s) 287
Cfr10I RCCGGY 3 cut(s) 206, 1387, 1439
Cfr13I GGNCC 5 cut(s) 125, 311, 348, 1331, 1418
CseI GACGC 2 cut(s) 230, 708
Csp6I GTAC 6 cut(s) 214, 468, 628, 973, 1000, 1429
CviAII CATG 6 cut(s) 194, 279, 454, 723, 1045, 1168
CviQI GTAC 6 cut(s) 214, 468, 628, 973, 1000, 1429
DdeI CTNAG 5 cut(s) 315, 600, 731, 900, 1194
DpnI GATC 5 cut(s) 121, 414, 426, 789, 1359
DpnII GATC 5 cut(s) 119, 412, 424, 787, 1357
EaeI YGGCCR 1 cut(s) 1441
EagI CGGCCG 1 cut(s) 1441
Eam1104I CTCTTC 5 cut(s) 45, 107, 135, 1186, 1227
EarI CTCTTC 5 cut(s) 45, 107, 135, 1186, 1227
EclXI CGGCCG 1 cut(s) 1441
Eco105I TACGTA 1 cut(s) 1003
Eco130I CCWWGG 1 cut(s) 109
Eco47I GGWCC 4 cut(s) 125, 311, 1331, 1418
Eco52I CGGCCG 1 cut(s) 1441
Eco57I CTGAAG 3 cut(s) 468, 787, 980
Eco72I CACGTG 1 cut(s) 332
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 3 cut(s) 152, 496, 630
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
Esp3I CGTCTC 2 cut(s) 42, 1359
FaeI CATG 6 cut(s) 197, 282, 457, 726, 1048, 1171
FaqI GGGAC 2 cut(s) 824, 1076
FatI CATG 6 cut(s) 193, 278, 453, 722, 1044, 1167
FauI CCCGC 1 cut(s) 203
FbaI TGATCA 1 cut(s) 424
FokI GGATG 3 cut(s) 319, 326, 617
FspBI CTAG 3 cut(s) 135, 162, 533
GlaI GCGC 1 cut(s) 286
GsaI CCCAGC 2 cut(s) 439, 811
GsuI CTGGAG 1 cut(s) 175
HaeIII GGCC 5 cut(s) 141, 171, 350, 445, 1443
HapII CCGG 5 cut(s) 207, 386, 1314, 1388, 1440
HgaI GACGC 2 cut(s) 230, 708
HhaI GCGC 1 cut(s) 287
Hin1II CATG 6 cut(s) 197, 282, 457, 726, 1048, 1171
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 7 cut(s) 566, 647, 929, 1176, 1200, 1269, 1336
HpaII CCGG 5 cut(s) 207, 386, 1314, 1388, 1440
HphI GGTGA 1 cut(s) 1303
Hpy166II GTNNAC 5 cut(s) 199, 261, 302, 337, 475
Hpy188I TCNGA 7 cut(s) 178, 505, 557, 1142, 1335, 1362, 1418
Hpy188III TCNNGA 3 cut(s) 314, 926, 1355
Hpy8I GTNNAC 5 cut(s) 199, 261, 302, 337, 475
Hpy99I CGWCG 1 cut(s) 1418
HpyAV CCTTC 4 cut(s) 932, 945, 1236, 1420
HpyCH4III ACNGT 3 cut(s) 299, 472, 644
HpyCH4IV ACGT 5 cut(s) 234, 331, 466, 580, 1002
HpyCH4V TGCA 5 cut(s) 329, 539, 613, 915, 1260
HpyF10VI GCNNNNNNNGC 6 cut(s) 391, 521, 533, 536, 1388, 1433
HpyF3I CTNAG 5 cut(s) 315, 600, 731, 900, 1194
HpySE526I ACGT 5 cut(s) 234, 331, 466, 580, 1002
Hsp92II CATG 6 cut(s) 197, 282, 457, 726, 1048, 1171
HspAI GCGC 1 cut(s) 285
KroI GCCGGC 1 cut(s) 1439
KroNI GCCGGC 1 cut(s) 1441
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 5 cut(s) 119, 412, 424, 787, 1357
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 5 cut(s) 282, 635, 686, 1085, 1316
LweI GCATC 3 cut(s) 49, 600, 1223
MaeI CTAG 3 cut(s) 135, 162, 533
MaeII ACGT 5 cut(s) 234, 331, 466, 580, 1002
MaeIII GTNAC 3 cut(s) 692, 1003, 1376
MalI GATC 5 cut(s) 121, 414, 426, 789, 1359
MboI GATC 5 cut(s) 119, 412, 424, 787, 1357
MfeI CAATTG 1 cut(s) 1069
MflI RGATCY 1 cut(s) 412
MluCI AATT 6 cut(s) 70, 147, 244, 904, 1069, 1186
MmeI TCCRAC 2 cut(s) 1153, 1396
MroNI GCCGGC 1 cut(s) 1439
MseI TTAA 3 cut(s) 203, 861, 968
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 3 cut(s) 515, 807, 899
MspI CCGG 5 cut(s) 207, 386, 1314, 1388, 1440
MspR9I CCNGG 4 cut(s) 154, 387, 498, 632
MunI CAATTG 1 cut(s) 1069
MvaI CCWGG 3 cut(s) 154, 498, 632
MvnI CGCG 1 cut(s) 1382
MwoI GCNNNNNNNGC 6 cut(s) 391, 521, 533, 536, 1388, 1433
NaeI GCCGGC 1 cut(s) 1441
NciI CCSGG 1 cut(s) 387
NdeII GATC 5 cut(s) 119, 412, 424, 787, 1357
NgoMIV GCCGGC 1 cut(s) 1439
NheI GCTAGC 1 cut(s) 161
NlaIII CATG 6 cut(s) 197, 282, 457, 726, 1048, 1171
NlaIV GGNNCC 3 cut(s) 312, 829, 1386
NmuCI GTSAC 1 cut(s) 1376
PciSI GCTCTTC 1 cut(s) 107
PcsI WCGNNNNNNNCGW 2 cut(s) 746, 1410
PdiI GCCGGC 1 cut(s) 1441
PfeI GAWTC 7 cut(s) 566, 647, 929, 1176, 1200, 1269, 1336
PflFI GACNNNGTC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 152
PmaCI CACGTG 1 cut(s) 332
PmlI CACGTG 1 cut(s) 332
Ppu21I YACGTR 3 cut(s) 332, 467, 1003
PpuMI RGGWCCY 1 cut(s) 311
PshBI ATTAAT 1 cut(s) 968
Psp5II RGGWCCY 1 cut(s) 311
Psp6I CCWGG 3 cut(s) 152, 496, 630
PspCI CACGTG 1 cut(s) 332
PspFI CCCAGC 2 cut(s) 435, 807
PspGI CCWGG 3 cut(s) 152, 496, 630
PspN4I GGNNCC 3 cut(s) 312, 829, 1386
PspPI GGNCC 5 cut(s) 125, 311, 348, 1331, 1418
PspPPI RGGWCCY 1 cut(s) 311
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 1 cut(s) 412
PsyI GACNNNGTC 1 cut(s) 233
PvuII CAGCTG 3 cut(s) 515, 807, 899
RsaI GTAC 6 cut(s) 215, 469, 629, 974, 1001, 1430
RsaNI GTAC 6 cut(s) 214, 468, 628, 973, 1000, 1429
RseI CAYNNNNRTG 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 3 cut(s) 203, 861, 968
Sau3AI GATC 5 cut(s) 119, 412, 424, 787, 1357
Sau96I GGNCC 5 cut(s) 125, 311, 348, 1331, 1418
ScrFI CCNGG 4 cut(s) 154, 387, 498, 632
SfaNI GCATC 3 cut(s) 49, 600, 1223
SfcI CTRYAG 1 cut(s) 537
SinI GGWCC 4 cut(s) 125, 311, 1331, 1418
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 957
SmoI CTYRAG 1 cut(s) 957
SnaBI TACGTA 1 cut(s) 1003
Sse9I AATT 6 cut(s) 70, 147, 244, 904, 1069, 1186
SsiI CCGC 6 cut(s) 210, 486, 1074, 1382, 1407, 1437
SspMI CTAG 3 cut(s) 135, 162, 533
StyD4I CCNGG 4 cut(s) 152, 385, 496, 630
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 3 cut(s) 299, 472, 644
TaiI ACGT 5 cut(s) 237, 334, 469, 583, 1005
TaqI TCGA 2 cut(s) 1115, 1448
TasI AATT 6 cut(s) 70, 147, 244, 904, 1069, 1186
TatI WGTACW 1 cut(s) 972
TauI GCSGC 2 cut(s) 1409, 1439
TfiI GAWTC 7 cut(s) 566, 647, 929, 1176, 1200, 1269, 1336
Tru1I TTAA 3 cut(s) 203, 861, 968
Tru9I TTAA 3 cut(s) 203, 861, 968
TscAI CASTG 2 cut(s) 294, 649
TseFI GTSAC 1 cut(s) 1376
Tsp45I GTSAC 1 cut(s) 1376
TspDTI ATGAA 3 cut(s) 754, 898, 1061
TspGWI ACGGA 4 cut(s) 319, 332, 862, 1072
TspRI CASTG 2 cut(s) 294, 649
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 4 cut(s) 125, 311, 1331, 1418
VspI ATTAAT 1 cut(s) 968
XapI RAATTY 2 cut(s) 147, 904
XspI CTAG 3 cut(s) 135, 162, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.