Rorug05G0499800

Ribosomal L32p protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004051
Physical Location & Seq
Forward (+)
68118575 .. 68122021
3447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0499800.1

Sequence Viewer

Length: 1473 bp
ATGGGTCAAGGAGTATCAGATGCGAAGAATATCAGCTTGAAGGCATTAGTGGACAAGGGGAGAAACAGAGTTATCTTCGTAGAGGCAGATAATGATTTCATTGATGTTCTCTTCAGTTTTTTGACATTACCAATGGGAAAAATTGTCAGGCTTGCCCGCGACCATTCAACACCACTGGAAATAGGTTGCATGAACAAATTGTATCAGAGTATTGAGAAGCTTGATGTGCAGGTTTTCAGGTCCAATGCATGTAGAGACATGTTGTTGCTTCCGCACAGTGTAGCTAACTGTCATTGCAAGAACCTCAAATTGAAAATTACTGACGATGCTGAGCCAACACGGTTTCTCTGCTGTGGTTATAGTTCTCATTCCTCCTGGTTAAGTTATTATGCAACGGCTACTTGCCCTTCATGTGTACTGCCTTGCTACCGTCCCCATGCCATGAATTCTCAAGTAAATCTTTCAGTGGATGATTCTCAAGTTGGAGGGGTCTTTGTAAAAGAGGGAGCCAGGTTTATGATTACTGATGATTTACAAGTGATACCCCCATTAAGTGCAGCTAACATTTCCTTGTTTACCAAGCTTGGAGCCACGAATAGCAATACCACTGAGGAGCTAACTTTTAATATTGGAGTCGAGCAGGTTTTGAATTTGCTTGTGAGCTCATTTGTATCCAAAACGCCATTCACTGAAACTCTGCTGAAGCCTAATCCTGTACCAAAATTAGGTGGTGTGAATTTCAGTCAAGGAAAATGTATTGAATCTCAAGTTTCAGGGGCCTCGATAAATGAGGAAAAAGAAAACATCTCTGTCAAGCTCGTAGTGAGTAAATCAAAGAATGTGGTTTGCTACGCAGAAGTAGGAGAGGATTTTGTTAATTTGATCTTCAGTTTCTTGACTCTTCCACTTGGGTTTATATTAAAGCAGATGCTGGATTCCCCTTGGAAAGGATGTATTGATCAGTTGTGCAAGGGTGTCCTGGATTTTGATGTGAAATTTTTTAAGTCAAATTACCACAAGGAATTGCTATGCAATCCCAAACTTATTCCTGGGTTCAGCTATGAGAACAATCTTTTAGCAATTGAGGAGGCAGAATACTATATGTTTTTTGATCGTAAGTTGACTTCTGATAGATCCATTATCCCTTCTAACCTGTCATCTCAGGCAATTAAAGTTAAATTTTTGGACCCCAAATCCCACGGTGATAAAGATACAAGTGCTCAGGGATTCTTAAAAGAACCAGCAATTTTCATAGTAGCTGACAATTTGGATATAAGGCGAGTATCTCCAATCTTTCAACTGTCTATTCTTAATGATTTGAAGGTACATTTCACTGATATTGAGGATCGAACTGTGCATGTTGGAAAGAACGAGGCTTTGAGTCTTTTGGTGGCTTCTGTTGTTTCTGACTCAGTTCTAACCAATGCTTTCCTACGGAAGCCACAGGAGCCATCAATTAAGCGAGAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L32p

Protein Analysis

490

Amino Acids

54.49

Weight (kDa)

6.34

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 9 - 456 6.2e-121 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 220, 631
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 157, 272
AclWI GGATC 2 cut(s) 1128, 1353
AcsI RAATTY 5 cut(s) 445, 649, 736, 995, 1178
AcuI CTGAAG 3 cut(s) 97, 722, 871
AfaI GTAC 3 cut(s) 417, 717, 1326
AfiI CCNNNNNNNGG 2 cut(s) 725, 947
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 7 cut(s) 40, 168, 313, 649, 761, 1298, 1321
AjnI CCWGG 4 cut(s) 374, 509, 978, 1048
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
Alw21I GWGCWC 2 cut(s) 665, 1222
Alw26I GTCTC 1 cut(s) 249
AlwI GGATC 2 cut(s) 1128, 1353
AlwNI CAGNNNCTG 1 cut(s) 931
AoxI GGCC 1 cut(s) 777
ApeKI GCWGC 1 cut(s) 557
ApoI RAATTY 5 cut(s) 445, 649, 736, 995, 1178
AspS9I GGNCC 3 cut(s) 240, 777, 1186
AsuHPI GGTGA 1 cut(s) 1214
AvaII GGWCC 2 cut(s) 240, 1186
BanII GRGCYC 1 cut(s) 665
BarI GAAGNNNNNNTAC 2 cut(s) 1108, 1140
Bbv12I GWGCWC 2 cut(s) 665, 1222
BbvI GCAGC 1 cut(s) 569
BccI CCATC 1 cut(s) 1459
BceAI ACGGC 1 cut(s) 411
BciT130I CCWGG 4 cut(s) 376, 511, 980, 1050
BciVI GTATCC 1 cut(s) 682
BclI TGATCA 1 cut(s) 958
BcoDI GTCTC 1 cut(s) 249
BfuAI ACCTGC 2 cut(s) 220, 631
BfuI GTATCC 1 cut(s) 682
BisI GCNGC 1 cut(s) 558
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 559
Bme1390I CCNGG 4 cut(s) 376, 511, 980, 1050
Bme18I GGWCC 2 cut(s) 240, 1186
BmgT120I GGNCC 3 cut(s) 240, 777, 1186
BmiI GGNNCC 5 cut(s) 508, 589, 778, 1188, 1449
BmrFI CCNGG 4 cut(s) 376, 511, 980, 1050
BmsI GCATC 3 cut(s) 10, 316, 918
Bpu10I CCTNAGC 1 cut(s) 1221
Bpu1102I GCTNAGC 1 cut(s) 330
BpuEI CTTGAG 3 cut(s) 435, 462, 750
BsaJI CCNNGG 3 cut(s) 941, 1049, 1198
Bsc4I CCNNNNNNNGG 2 cut(s) 725, 947
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 292
BseBI CCWGG 4 cut(s) 376, 511, 980, 1050
BseDI CCNNGG 3 cut(s) 941, 1049, 1198
BseGI GGATG 2 cut(s) 475, 956
BseLI CCNNNNNNNGG 2 cut(s) 725, 947
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 5 cut(s) 321, 600, 1175, 1235, 1425
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 2 cut(s) 626, 1100
BseXI GCAGC 1 cut(s) 569
BsgI GTGCAG 2 cut(s) 248, 576
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 779
BsiHKAI GWGCWC 2 cut(s) 665, 1222
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 2 cut(s) 725, 947
BsmAI GTCTC 1 cut(s) 249
BsmFI GGGAC 1 cut(s) 417
BsnI GGCC 1 cut(s) 779
Bsp1286I GDGCHC 2 cut(s) 665, 1222
Bsp143I GATC 5 cut(s) 882, 958, 1111, 1133, 1345
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 2 cut(s) 157, 272
BspANI GGCC 1 cut(s) 779
BspCNI CTCAG 5 cut(s) 322, 601, 1174, 1234, 1424
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 5 cut(s) 508, 589, 778, 1188, 1449
BspMI ACCTGC 2 cut(s) 220, 631
BspPI GGATC 2 cut(s) 1128, 1353
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 1 cut(s) 180
BssECI CCNNGG 3 cut(s) 941, 1049, 1198
BssMI GATC 5 cut(s) 882, 958, 1111, 1133, 1345
BssT1I CCWWGG 1 cut(s) 941
Bst2UI CCWGG 4 cut(s) 376, 511, 980, 1050
Bst4CI ACNGT 7 cut(s) 278, 290, 342, 431, 1202, 1302, 1354
Bst6I CTCTTC 2 cut(s) 116, 906
BstC8I GCNNGC 2 cut(s) 153, 157
BstDEI CTNAG 5 cut(s) 330, 609, 1161, 1221, 1411
BstDSI CCRYGG 1 cut(s) 1198
BstENI CCTNNNNNAGG 1 cut(s) 945
BstF5I GGATG 2 cut(s) 475, 956
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 5 cut(s) 885, 961, 1114, 1136, 1348
BstMAI GTCTC 1 cut(s) 249
BstMBI GATC 5 cut(s) 882, 958, 1111, 1133, 1345
BstMWI GCNNNNNNNGC 2 cut(s) 226, 1447
BstNI CCWGG 4 cut(s) 376, 511, 980, 1050
BstNSI RCATGY 3 cut(s) 252, 262, 1361
BstSCI CCNGG 4 cut(s) 374, 509, 978, 1048
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 569
BstX2I RGATCY 1 cut(s) 1133
BstYI RGATCY 1 cut(s) 1133
BsuI GTATCC 1 cut(s) 682
BsuRI GGCC 1 cut(s) 779
BtgI CCRYGG 1 cut(s) 1198
BtsCI GGATG 2 cut(s) 475, 956
BtsIMutI CAGTG 6 cut(s) 173, 283, 471, 606, 687, 1332
BveI ACCTGC 2 cut(s) 220, 631
Cac8I GCNNGC 2 cut(s) 153, 157
CaiI CAGNNNCTG 1 cut(s) 931
Cfr13I GGNCC 3 cut(s) 240, 777, 1186
Csp6I GTAC 3 cut(s) 416, 716, 1325
CspCI CAANNNNNGTGG 2 cut(s) 822, 857
CviAII CATG 7 cut(s) 190, 249, 259, 411, 437, 442, 1358
CviQI GTAC 3 cut(s) 416, 716, 1325
DdeI CTNAG 5 cut(s) 330, 609, 1161, 1221, 1411
DpnI GATC 5 cut(s) 884, 960, 1113, 1135, 1347
DpnII GATC 5 cut(s) 882, 958, 1111, 1133, 1345
Eam1104I CTCTTC 2 cut(s) 116, 906
EarI CTCTTC 2 cut(s) 116, 906
Ecl136II GAGCTC 1 cut(s) 663
Eco130I CCWWGG 1 cut(s) 941
Eco24I GRGCYC 1 cut(s) 665
Eco47I GGWCC 2 cut(s) 240, 1186
Eco53kI GAGCTC 1 cut(s) 663
Eco57I CTGAAG 3 cut(s) 97, 722, 871
EcoICRI GAGCTC 1 cut(s) 663
EcoNI CCTNNNNNAGG 1 cut(s) 945
EcoO109I RGGNCCY 1 cut(s) 777
EcoRI GAATTC 1 cut(s) 445
EcoRII CCWGG 4 cut(s) 374, 509, 978, 1048
EcoT14I CCWWGG 1 cut(s) 941
EcoT22I ATGCAT 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 941
FaeI CATG 7 cut(s) 193, 252, 262, 414, 440, 445, 1361
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FaqI GGGAC 1 cut(s) 417
FatI CATG 7 cut(s) 189, 248, 258, 410, 436, 441, 1357
FauI CCCGC 1 cut(s) 164
FbaI TGATCA 1 cut(s) 958
Fnu4HI GCNGC 1 cut(s) 558
FokI GGATG 2 cut(s) 482, 963
FriOI GRGCYC 1 cut(s) 665
Fsp4HI GCNGC 1 cut(s) 558
GluI GCNGC 1 cut(s) 558
HaeIII GGCC 1 cut(s) 779
Hin1II CATG 7 cut(s) 193, 252, 262, 414, 440, 445, 1361
HincII GTYRAC 1 cut(s) 1122
HindII GTYRAC 1 cut(s) 1122
HindIII AAGCTT 2 cut(s) 218, 581
HinfI GANTC 8 cut(s) 473, 633, 761, 898, 935, 1227, 1381, 1409
HphI GGTGA 1 cut(s) 1214
Hpy166II GTNNAC 4 cut(s) 52, 416, 576, 1122
Hpy188I TCNGA 4 cut(s) 19, 207, 1129, 1408
Hpy188III TCNNGA 1 cut(s) 895
Hpy8I GTNNAC 4 cut(s) 52, 416, 576, 1122
HpyAV CCTTC 4 cut(s) 34, 417, 1155, 1315
HpyCH4III ACNGT 7 cut(s) 278, 290, 342, 431, 1202, 1302, 1354
HpyCH4V TGCA 9 cut(s) 189, 229, 248, 297, 392, 557, 969, 1032, 1357
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 1447
HpyF3I CTNAG 5 cut(s) 330, 609, 1161, 1221, 1411
Hsp92II CATG 7 cut(s) 193, 252, 262, 414, 440, 445, 1361
Ksp22I TGATCA 1 cut(s) 958
Kzo9I GATC 5 cut(s) 882, 958, 1111, 1133, 1345
LmnI GCTCC 4 cut(s) 506, 587, 613, 1447
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 3 cut(s) 10, 316, 918
MalI GATC 5 cut(s) 884, 960, 1113, 1135, 1347
MboI GATC 5 cut(s) 882, 958, 1111, 1133, 1345
MboII GAAGA 5 cut(s) 37, 67, 103, 877, 893
MfeI CAATTG 1 cut(s) 1080
MflI RGATCY 1 cut(s) 1133
MhlI GDGCHC 2 cut(s) 665, 1222
MlyI GAGTC 4 cut(s) 642, 892, 1390, 1403
MmeI TCCRAC 2 cut(s) 463, 1342
Mph1103I ATGCAT 1 cut(s) 250
MspR9I CCNGG 4 cut(s) 376, 511, 980, 1050
MunI CAATTG 1 cut(s) 1080
MvaI CCWGG 4 cut(s) 376, 511, 980, 1050
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 226, 1447
NdeII GATC 5 cut(s) 882, 958, 1111, 1133, 1345
NlaIII CATG 7 cut(s) 193, 252, 262, 414, 440, 445, 1361
NlaIV GGNNCC 5 cut(s) 508, 589, 778, 1188, 1449
NsiI ATGCAT 1 cut(s) 250
NspI RCATGY 3 cut(s) 252, 262, 1361
PciI ACATGT 1 cut(s) 258
PfeI GAWTC 4 cut(s) 473, 761, 935, 1227
PfoI TCCNGGA 1 cut(s) 978
PkrI GCNGC 1 cut(s) 559
PleI GAGTC 4 cut(s) 641, 892, 1389, 1403
PpsI GAGTC 4 cut(s) 641, 892, 1389, 1403
PscI ACATGT 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 665
Psp6I CCWGG 4 cut(s) 374, 509, 978, 1048
PspGI CCWGG 4 cut(s) 374, 509, 978, 1048
PspN4I GGNNCC 5 cut(s) 508, 589, 778, 1188, 1449
PspPI GGNCC 3 cut(s) 240, 777, 1186
PstNI CAGNNNCTG 1 cut(s) 931
PsuI RGATCY 1 cut(s) 1133
RsaI GTAC 3 cut(s) 417, 717, 1326
RsaNI GTAC 3 cut(s) 416, 716, 1325
SacI GAGCTC 1 cut(s) 665
SatI GCNGC 1 cut(s) 558
Sau3AI GATC 5 cut(s) 882, 958, 1111, 1133, 1345
Sau96I GGNCC 3 cut(s) 240, 777, 1186
SchI GAGTC 4 cut(s) 642, 892, 1390, 1403
ScrFI CCNGG 4 cut(s) 376, 511, 980, 1050
SduI GDGCHC 2 cut(s) 665, 1222
SfaNI GCATC 3 cut(s) 10, 316, 918
SinI GGWCC 2 cut(s) 240, 1186
SmlI CTYRAG 3 cut(s) 450, 477, 765
SmoI CTYRAG 3 cut(s) 450, 477, 765
SsiI CCGC 2 cut(s) 157, 272
SspI AATATT 1 cut(s) 628
SstI GAGCTC 1 cut(s) 665
StyD4I CCNGG 4 cut(s) 374, 509, 978, 1048
StyI CCWWGG 1 cut(s) 941
TaaI ACNGT 7 cut(s) 278, 290, 342, 431, 1202, 1302, 1354
TaqI TCGA 3 cut(s) 636, 782, 1348
TatI WGTACW 1 cut(s) 415
TfiI GAWTC 4 cut(s) 473, 761, 935, 1227
TscAI CASTG 6 cut(s) 180, 283, 471, 613, 694, 1339
TseI GCWGC 1 cut(s) 557
TspDTI ATGAA 5 cut(s) 88, 206, 399, 458, 1240
TspGWI ACGGA 1 cut(s) 1450
TspRI CASTG 6 cut(s) 180, 283, 471, 613, 694, 1339
VpaK11BI GGWCC 2 cut(s) 240, 1186
XagI CCTNNNNNAGG 1 cut(s) 945
XapI RAATTY 5 cut(s) 445, 649, 736, 995, 1178
XceI RCATGY 3 cut(s) 252, 262, 1361
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.