Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004051

Physical Location & Seq

Genomic Coordinates Forward (+)

718324 .. 718907

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG005300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCTTTGCGCGTGGGAATGCTCAGGTCCGGCAGAGACCACTTGGCCTCCATTTTCGGCTTTCGGAGGTGGACCCACATCGCCGCCATGCCTCCGCCGTCGTTGTTTGGGTCTGTTCAGAACCAAATCGCTTCCCCACATTTTGTTCTGCCGGAATTCGATCGGGAGGCAGACACCGGTTTCGGGTTTCCAAGTATCTCCTTCGGTGGTTCCATGGAGCTCATGGCTGTCCCCAAGAGGAAGACTTCTCCCCACAAGAGAGGCATAAGGAATGGCCCAAAGGCTTTGAAACCTGTTCGGGTTATAATCCGATGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32p

Protein Analysis

106

Amino Acids

11.77

Weight (kDa)

11.6

Isoelectric Point (pI)

63.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26740 AT1G69485
fragaria_vesca	FvH4_4g13880 FvH4_4g13880
malus_domestica	MD04G1010200.v1.1
prunus_persica	Prupe.1G009500_v2.0.a1
pyrus_communis	pycom04g00830 pycom420g01310
rosa_chinensis	RchiOBHm_Chr4g0414951 RchiOBHm_Chr4g0415001 RchiOBHm_Chr6g0251041
rosa_laevigata	RLG00000008107 RLG00000015488
rosa_multiflora	Rmu_sc0001017.1_g000010
rosa_roxburghii	Rroxscaffold_5G00358730 Rroxscaffold_7G00217100
rosa_rugosa	Rorug02G0049300 Rorug04G0131100 Rorug04G0131200 Rorug04G0131300 Rorug04G0131300 Rorug05G0499800
rosa_samantha	Rh4AG190600 Rh4BG188600 Rh4CG201800 Rh4DG189200 Rh6AG007900 Rh6BG003200 Rh6CG005300 Rh6DG005600
rosa_wichuraiana	Rw4G016190 Rw4G016230 Rw6G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AccII	CGCG	1 cut(s)	12
AciI	CCGC	2 cut(s)	84, 95
AcsI	RAATTY	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgeI	ACCGGT	1 cut(s)	176
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw21I	GWGCWC	1 cut(s)	222
Alw26I	GTCTC	1 cut(s)	30
AoxI	GGCC	2 cut(s)	45, 274
ApoI	RAATTY	1 cut(s)	155
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AsiGI	ACCGGT	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	3 cut(s)	27, 72, 275
AvaII	GGWCC	2 cut(s)	27, 72
BanII	GRGCYC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	222
BceAI	ACGGC	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	30
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme18I	GGWCC	2 cut(s)	27, 72
BmgT120I	GGNCC	3 cut(s)	27, 72, 275
BmiI	GGNNCC	2 cut(s)	74, 211
BmsI	GCATC	1 cut(s)	302
BpiI	GAAGAC	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse118I	RCCGGY	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	213
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	37
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	2 cut(s)	47, 276
BshTI	ACCGGT	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	3 cut(s)	30, 152, 177
BslFI	GGGAC	1 cut(s)	215
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	47, 276
Bso31I	GGTCTC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	160
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	2 cut(s)	84, 95
BspANI	GGCC	2 cut(s)	47, 276
BspCNI	CTCAG	1 cut(s)	36
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	74, 211
BspTNI	GGTCTC	1 cut(s)	30
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	160
BstMCI	CGRYCG	1 cut(s)	163
BstUI	CGCG	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	47, 276
BtgI	CCRYGG	1 cut(s)	213
BtgZI	GCGATG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	27, 72, 275
CspAI	ACCGGT	1 cut(s)	176
CviAII	CATG	3 cut(s)	88, 214, 223
CviJI	RGCY	7 cut(s)	5, 47, 60, 220, 227, 276, 284
CviKI_1	RGCY	7 cut(s)	5, 47, 60, 220, 227, 276, 284
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	222
Eco31I	GGTCTC	1 cut(s)	30
Eco47I	GGWCC	2 cut(s)	27, 72
Eco53kI	GAGCTC	1 cut(s)	220
EcoICRI	GAGCTC	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	3 cut(s)	91, 217, 226
FaiI	YATR	5 cut(s)	89, 215, 224, 266, 305
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	3 cut(s)	87, 213, 222
Fnu4HI	GCNGC	1 cut(s)	84
FriOI	GRGCYC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	84
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	47, 276
HapII	CCGG	3 cut(s)	30, 152, 177
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	91, 217, 226
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HpaII	CCGG	3 cut(s)	30, 152, 177
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	3 cut(s)	66, 120, 311
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	1 cut(s)	72
Hpy99I	CGWCG	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	211
HpyCH4V	TGCA	1 cut(s)	315
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	91, 217, 226
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	5 cut(s)	10, 43, 165, 190, 306
LweI	GCATC	1 cut(s)	302
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	1 cut(s)	155
MnlI	CCTC	6 cut(s)	58, 60, 102, 160, 231, 254
MspI	CCGG	3 cut(s)	30, 152, 177
Mva1269I	GAATGC	1 cut(s)	24
MvnI	CGCG	1 cut(s)	12
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	3 cut(s)	91, 217, 226
NlaIV	GGNNCC	2 cut(s)	74, 211
PctI	GAATGC	1 cut(s)	24
PinAI	ACCGGT	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	85
Ple19I	CGATCG	1 cut(s)	163
PsiI	TTATAA	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	74, 211
PspPI	GGNCC	3 cut(s)	27, 72, 275
PvuI	CGATCG	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	222
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	3 cut(s)	27, 72, 275
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	4 cut(s)	29, 71, 222, 295
SfaNI	GCATC	1 cut(s)	302
SinI	GGWCC	2 cut(s)	27, 72
Sse9I	AATT	1 cut(s)	155
SsiI	CCGC	2 cut(s)	84, 95
SstI	GAGCTC	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	213
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	155
TauI	GCSGC	1 cut(s)	86
VpaK11BI	GGWCC	2 cut(s)	27, 72
XapI	RAATTY	1 cut(s)	155
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.