RchiOBHm_Chr4g0415001

Ribosomal L32p protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004051
Physical Location & Seq
Reverse (-)
39513009 .. 39515186
2178 bp
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UTR
Exon/CDS
Intron
PRQ38533

Sequence Viewer

Length: 408 bp
ATGGCGTCGAAGCTTTCCATGCTTAGGAGCAGAAGTGAGAACATGGCGTGCATTTTCGGCATCAGGAGGTGGAACCACATCGCAGCAATTCCTCCGTCCTCGGATGGGGCCATTCAACGGACGATGATTTCATCGCCACCGTTTGCTCTGCCAGAGTTTTATCGGGAGACTGAGAAGGATAACAAAGTCGGATTCGGGTTGCCCAGTTTTCTGTTCGGTGGGTCCATGGAGCTCATGGCTGTCCCCAAGAGGAAGACTACTCCCCACAAGAGAGGCATAAGAAATGGCCCGAAAGCTCTGAAGCCTGTTCCTGTGATAATCCGATGCAGGAGCTGTGGTCGAGTCAAGCTGCCACATTATTATTGTTGCAGTGGACATAGGGGAAGTACCGGTGAGCGGGAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L32p

Protein Analysis

135

Amino Acids

15.06

Weight (kDa)

10.3

Isoelectric Point (pI)

76.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L32p PF01783 80 - 126 4.8e-10 Ribosomal L32p protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 397
AciI CCGC 1 cut(s) 397
AcuI CTGAAG 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 4 cut(s) 24, 105, 117, 396
AgeI ACCGGT 1 cut(s) 389
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 5 cut(s) 13, 232, 296, 333, 349
AluI AGCT 5 cut(s) 13, 232, 296, 333, 349
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 161
AlwNI CAGNNNCTG 1 cut(s) 333
AoxI GGCC 2 cut(s) 108, 286
ApeKI GCWGC 2 cut(s) 83, 349
AsiGI ACCGGT 1 cut(s) 389
AspS9I GGNCC 3 cut(s) 108, 222, 287
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 222
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 95, 336
BccI CCATC 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 161
BisI GCNGC 2 cut(s) 84, 350
BlsI GCNGC 2 cut(s) 85, 351
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 3 cut(s) 108, 222, 287
BmiI GGNNCC 3 cut(s) 74, 109, 223
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 69, 314
BmuI ACTGGG 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 23
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 99, 225
BsaWI WCCGGW 1 cut(s) 389
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 322, 352
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 105, 117, 396
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 99, 225
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 4 cut(s) 24, 105, 117, 396
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 95, 336
BshFI GGCC 2 cut(s) 110, 288
BshTI ACCGGT 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 390
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 4 cut(s) 24, 105, 117, 396
BsmAI GTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 2 cut(s) 110, 288
Bsp1286I GDGCHC 1 cut(s) 234
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 1 cut(s) 397
BspANI GGCC 2 cut(s) 110, 288
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 74, 109, 223
BsrBI CCGCTC 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 99, 225
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 23, 171
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 109
BstMAI GTCTC 1 cut(s) 161
BstMWI GCNNNNNNNGC 2 cut(s) 19, 57
BstV1I GCAGC 2 cut(s) 95, 336
BstV2I GAAGAC 1 cut(s) 260
BsuRI GGCC 2 cut(s) 110, 288
BtgI CCRYGG 1 cut(s) 225
BtgZI GCGATG 2 cut(s) 64, 117
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 3 cut(s) 108, 222, 287
Csp6I GTAC 1 cut(s) 387
CspAI ACCGGT 1 cut(s) 389
CviAII CATG 4 cut(s) 19, 43, 226, 235
CviJI RGCY 9 cut(s) 13, 110, 232, 239, 288, 296, 304, 333, 349
CviKI_1 RGCY 9 cut(s) 13, 110, 232, 239, 288, 296, 304, 333, 349
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 2 cut(s) 23, 171
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 4 cut(s) 22, 46, 229, 238
FaiI YATR 7 cut(s) 20, 44, 227, 236, 278, 378, 406
FaqI GGGAC 1 cut(s) 227
FatI CATG 4 cut(s) 18, 42, 225, 234
FauI CCCGC 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 84, 350
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 84, 350
GluI GCNGC 2 cut(s) 84, 350
HaeIII GGCC 2 cut(s) 110, 288
HapII CCGG 1 cut(s) 390
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 22, 46, 229, 238
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 2 cut(s) 192, 342
HpaII CCGG 1 cut(s) 390
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 4 cut(s) 103, 191, 300, 323
Hpy188III TCNNGA 2 cut(s) 64, 164
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 51, 327, 369
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 57
HpyF3I CTNAG 2 cut(s) 23, 171
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 22, 46, 229, 238
LmnI GCTCC 3 cut(s) 27, 229, 330
LpnPI CCDG 7 cut(s) 49, 165, 217, 313, 318, 324, 403
Lsp1109I GCAGC 2 cut(s) 95, 336
LweI GCATC 2 cut(s) 69, 314
MbiI CCGCTC 1 cut(s) 397
MboII GAAGA 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 1 cut(s) 87
MlyI GAGTC 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 169
MnlI CCTC 6 cut(s) 60, 102, 109, 243, 266, 394
MspI CCGG 1 cut(s) 390
MwoI GCNNNNNNNGC 2 cut(s) 19, 57
NcoI CCATGG 1 cut(s) 225
NlaIII CATG 4 cut(s) 22, 46, 229, 238
NlaIV GGNNCC 3 cut(s) 74, 109, 223
PfeI GAWTC 1 cut(s) 192
PinAI ACCGGT 1 cut(s) 389
PkrI GCNGC 2 cut(s) 85, 351
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 234
PspN4I GGNNCC 3 cut(s) 74, 109, 223
PspPI GGNCC 3 cut(s) 108, 222, 287
PstNI CAGNNNCTG 1 cut(s) 333
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SacI GAGCTC 1 cut(s) 234
SatI GCNGC 2 cut(s) 84, 350
Sau96I GGNCC 3 cut(s) 108, 222, 287
SchI GAGTC 1 cut(s) 351
SduI GDGCHC 1 cut(s) 234
SetI ASST 7 cut(s) 15, 71, 234, 298, 335, 351, 405
SfaNI GCATC 2 cut(s) 69, 314
SinI GGWCC 1 cut(s) 222
Sse9I AATT 1 cut(s) 87
SsiI CCGC 1 cut(s) 397
SstI GAGCTC 1 cut(s) 234
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 8, 340
TasI AATT 1 cut(s) 87
TfiI GAWTC 1 cut(s) 192
TscAI CASTG 1 cut(s) 376
TseI GCWGC 2 cut(s) 83, 349
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 2 cut(s) 84, 133
TspRI CASTG 1 cut(s) 376
VpaK11BI GGWCC 1 cut(s) 222
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.