RLG00000008107

Ribosomal L32p protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004051
Physical Location & Seq
Forward (+)
25663265 .. 25666060
2796 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008107

Sequence Viewer

Length: 522 bp
ATGGCGTCCAAGATTTCAATGCTTAGGAGCGGTAGTGAGAACATAGCGTGCATTTTCGGCATCAGGAGGTGGAGCAACATCGCAGCAATTCCTCCGTCGTCGGATGGGGCCATTGCCCGGGCGGTGATTTCATCGCCACCGTTCGCTCTGCCAGAGTTTGATCGGGAGCCTGAGAAGGATAACAAAGTCGGATTCGGGTTCCCTAGTTTTCAATTCGGTGGATCCATGGAGCTCATGGCTGTCCCCAAGAGGAAGACTACTCCCCACAAGAGAGGCATAAGAAATGGCCCGAAAGCTCTGAAGCCTGTTCCTGTGATAATCCGATGCAGGAGCTGTGGTCGAGTCAAGCTGCCACATTATTATTGTTGCAGTGGACATAGGGGAAGTACCGGTGAGCGGGAGGGTTTGGATCCGGCTGGCATGGTGGTTGCCTTGATGTTCGAGGCAACTGCGGAAGGGGGTGATGTGTTGGGCGTCCAACTGATTGAGGAGAATTGCTTGTGTTTTGGGCCATGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L32p

Protein Analysis

174

Amino Acids

18.58

Weight (kDa)

9.0

Isoelectric Point (pI)

66.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L32p PF01783 80 - 126 7e-10 Ribosomal L32p protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 30, 397
AciI CCGC 4 cut(s) 30, 122, 397, 452
AclWI GGATC 4 cut(s) 216, 229, 404, 417
AcuI CTGAAG 1 cut(s) 320
AcyI GRCGYC 2 cut(s) 5, 474
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 2 cut(s) 117, 396
AgeI ACCGGT 1 cut(s) 389
AgsI TTSAA 2 cut(s) 18, 212
AluBI AGCT 4 cut(s) 232, 296, 333, 349
AluI AGCT 4 cut(s) 232, 296, 333, 349
Alw21I GWGCWC 1 cut(s) 234
AlwI GGATC 4 cut(s) 216, 229, 404, 417
AlwNI CAGNNNCTG 1 cut(s) 333
Ama87I CYCGRG 1 cut(s) 117
AoxI GGCC 3 cut(s) 108, 286, 509
ApeKI GCWGC 2 cut(s) 83, 349
AsiGI ACCGGT 1 cut(s) 389
AspS9I GGNCC 3 cut(s) 108, 287, 509
AsuC2I CCSGG 2 cut(s) 118, 119
AsuHPI GGTGA 3 cut(s) 136, 404, 473
AvaI CYCGRG 1 cut(s) 117
BamHI GGATCC 2 cut(s) 221, 409
BanII GRGCYC 1 cut(s) 234
BbsI GAAGAC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 2 cut(s) 95, 336
BccI CCATC 1 cut(s) 98
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BcnI CCSGG 2 cut(s) 118, 119
BfaI CTAG 1 cut(s) 204
BisI GCNGC 2 cut(s) 84, 350
BlsI GCNGC 2 cut(s) 85, 351
Bme1390I CCNGG 2 cut(s) 118, 119
BmeT110I CYCGRG 1 cut(s) 117
BmgT120I GGNCC 3 cut(s) 108, 287, 509
BmiI GGNNCC 5 cut(s) 109, 168, 200, 223, 411
BmrFI CCNGG 2 cut(s) 118, 119
BmsI GCATC 2 cut(s) 69, 314
BpiI GAAGAC 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 23
BpuMI CCSGG 2 cut(s) 118, 119
BsaHI GRCGYC 2 cut(s) 5, 474
BsaJI CCNNGG 2 cut(s) 117, 225
BsaWI WCCGGW 1 cut(s) 389
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 322, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 396
Bse118I RCCGGY 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 117, 225
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 2 cut(s) 117, 396
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 2 cut(s) 95, 336
BshFI GGCC 3 cut(s) 110, 288, 511
BshTI ACCGGT 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 234
BsiHKCI CYCGRG 1 cut(s) 117
BsiSI CCGG 3 cut(s) 118, 390, 413
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 117, 396
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 3 cut(s) 110, 288, 511
BsoBI CYCGRG 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 3 cut(s) 160, 221, 409
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 4 cut(s) 30, 122, 397, 452
BspANI GGCC 3 cut(s) 110, 288, 511
BspCNI CTCAG 1 cut(s) 163
BspLI GGNNCC 5 cut(s) 109, 168, 200, 223, 411
BspPI GGATC 4 cut(s) 216, 229, 404, 417
BsrBI CCGCTC 2 cut(s) 30, 397
BsrDI GCAATG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 117, 225
BssMI GATC 3 cut(s) 160, 221, 409
BssNI GRCGYC 2 cut(s) 5, 474
BssT1I CCWWGG 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 141
BstACI GRCGYC 2 cut(s) 5, 474
BstC8I GCNNGC 2 cut(s) 49, 418
BstDEI CTNAG 2 cut(s) 23, 171
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 3 cut(s) 163, 224, 412
BstMBI GATC 3 cut(s) 160, 221, 409
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 116, 117
BstV1I GCAGC 2 cut(s) 95, 336
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 221, 409
BstYI RGATCY 2 cut(s) 221, 409
BsuRI GGCC 3 cut(s) 110, 288, 511
BtgI CCRYGG 1 cut(s) 225
BtgZI GCGATG 2 cut(s) 64, 117
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 2 cut(s) 49, 418
CaiI CAGNNNCTG 1 cut(s) 333
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 3 cut(s) 108, 287, 509
Cfr9I CCCGGG 1 cut(s) 117
CseI GACGC 1 cut(s) 463
Csp6I GTAC 1 cut(s) 387
CspAI ACCGGT 1 cut(s) 389
CviAII CATG 4 cut(s) 226, 235, 421, 513
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 2 cut(s) 23, 171
DpnI GATC 3 cut(s) 162, 223, 411
DpnII GATC 3 cut(s) 160, 221, 409
Ecl136II GAGCTC 1 cut(s) 232
Eco130I CCWWGG 1 cut(s) 225
Eco24I GRGCYC 1 cut(s) 234
Eco53kI GAGCTC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 225
EcoT38I GRGCYC 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 225
FaeI CATG 4 cut(s) 229, 238, 424, 516
FaiI YATR 7 cut(s) 44, 227, 236, 278, 378, 422, 514
FaqI GGGAC 1 cut(s) 227
FatI CATG 4 cut(s) 225, 234, 420, 512
FauI CCCGC 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 84, 350
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 234
Fsp4HI GCNGC 2 cut(s) 84, 350
FspBI CTAG 1 cut(s) 204
GluI GCNGC 2 cut(s) 84, 350
HaeIII GGCC 3 cut(s) 110, 288, 511
HapII CCGG 3 cut(s) 118, 390, 413
HgaI GACGC 1 cut(s) 463
Hin1I GRCGYC 2 cut(s) 5, 474
Hin1II CATG 4 cut(s) 229, 238, 424, 516
HinfI GANTC 2 cut(s) 192, 342
HpaII CCGG 3 cut(s) 118, 390, 413
HphI GGTGA 3 cut(s) 136, 404, 473
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 4 cut(s) 103, 191, 300, 323
Hpy188III TCNNGA 2 cut(s) 64, 164
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 2 cut(s) 100, 103
HpyAV CCTTC 2 cut(s) 169, 449
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 3 cut(s) 51, 327, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 2 cut(s) 23, 171
Hsp92I GRCGYC 2 cut(s) 5, 474
Hsp92II CATG 4 cut(s) 229, 238, 424, 516
Kzo9I GATC 3 cut(s) 160, 221, 409
LmnI GCTCC 5 cut(s) 27, 72, 166, 229, 330
Lsp1109I GCAGC 2 cut(s) 95, 336
LweI GCATC 2 cut(s) 69, 314
MaeI CTAG 1 cut(s) 204
MalI GATC 3 cut(s) 162, 223, 411
MbiI CCGCTC 2 cut(s) 30, 397
MboI GATC 3 cut(s) 160, 221, 409
MboII GAAGA 1 cut(s) 265
MflI RGATCY 2 cut(s) 221, 409
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 3 cut(s) 87, 212, 493
MlyI GAGTC 1 cut(s) 351
MmeI TCCRAC 3 cut(s) 81, 169, 502
MnlI CCTC 7 cut(s) 60, 102, 243, 266, 394, 436, 481
MspI CCGG 3 cut(s) 118, 390, 413
MspR9I CCNGG 2 cut(s) 118, 119
MwoI GCNNNNNNNGC 1 cut(s) 57
NciI CCSGG 2 cut(s) 118, 119
NcoI CCATGG 1 cut(s) 225
NdeII GATC 3 cut(s) 160, 221, 409
NlaIII CATG 4 cut(s) 229, 238, 424, 516
NlaIV GGNNCC 5 cut(s) 109, 168, 200, 223, 411
PfeI GAWTC 1 cut(s) 192
PinAI ACCGGT 1 cut(s) 389
PkrI GCNGC 2 cut(s) 85, 351
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
Psp124BI GAGCTC 1 cut(s) 234
PspN4I GGNNCC 5 cut(s) 109, 168, 200, 223, 411
PspPI GGNCC 3 cut(s) 108, 287, 509
PstNI CAGNNNCTG 1 cut(s) 333
PsuI RGATCY 2 cut(s) 221, 409
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SacI GAGCTC 1 cut(s) 234
SatI GCNGC 2 cut(s) 84, 350
Sau3AI GATC 3 cut(s) 160, 221, 409
Sau96I GGNCC 3 cut(s) 108, 287, 509
SchI GAGTC 1 cut(s) 351
ScrFI CCNGG 2 cut(s) 118, 119
SduI GDGCHC 1 cut(s) 234
SetI ASST 5 cut(s) 71, 234, 298, 335, 351
SfaNI GCATC 2 cut(s) 69, 314
SmaI CCCGGG 1 cut(s) 119
SrfI GCCCGGGC 1 cut(s) 119
Sse9I AATT 3 cut(s) 87, 212, 493
SsiI CCGC 4 cut(s) 30, 122, 397, 452
SspMI CTAG 1 cut(s) 204
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 116, 117
StyI CCWWGG 1 cut(s) 225
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 340, 441
TasI AATT 3 cut(s) 87, 212, 493
TfiI GAWTC 1 cut(s) 192
TscAI CASTG 1 cut(s) 376
TseI GCWGC 2 cut(s) 83, 349
TspDTI ATGAA 1 cut(s) 120
TspGWI ACGGA 1 cut(s) 84
TspMI CCCGGG 1 cut(s) 117
TspRI CASTG 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XmaI CCCGGG 1 cut(s) 117
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.