Rroxscaffold_7G00217100

Ribosomal L32p protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004051
Physical Location & Seq
Reverse (-)
67642978 .. 67644380
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00217100.1

Sequence Viewer

Length: 399 bp
ATGGCTTTGCGCATGGGAATGCTCAGGTCCGGCAGAGACCACTTGGCCTCCATTTTCGGCTTTCGGAGGTGGACCCACATCGCCGCCATGCCTCCGCCGTCGTTGTTTGGGTCTGTTCAGAACCAAATCGCTTCCCCTCATTTTGTTCTGCCGGAATTCGATCGGGAGGCAGACACCGGTTTCGGGTTCCCAAGTATCTCGTTCGGTGGTTCCATGGAGCTCATGGCTGTCCCCAAGAGGAAGACTTCTCCCCACAAGAGAGGCATAAGGAATGGCCCAAAGGCTTTGAAACCTGTTCGGGTTATAATCCGATGCAAGAGTTGTGGTCGAGTCAAGCTGCCGCACTATTATTGTTGCAGTGGACATAGGGGAAATGACAGTAATGGCTCAATTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L32p

Protein Analysis

132

Amino Acids

14.58

Weight (kDa)

10.69

Isoelectric Point (pI)

59.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L32p PF01783 76 - 123 5e-11 Ribosomal L32p protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
Acc16I TGCGCA 1 cut(s) 11
AciI CCGC 3 cut(s) 84, 95, 341
AcsI RAATTY 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 183
AgeI ACCGGT 1 cut(s) 176
AgsI TTSAA 1 cut(s) 289
AluBI AGCT 2 cut(s) 220, 337
AluI AGCT 2 cut(s) 220, 337
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 30
AoxI GGCC 2 cut(s) 45, 274
ApeKI GCWGC 1 cut(s) 337
ApoI RAATTY 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AsiGI ACCGGT 1 cut(s) 176
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 3 cut(s) 27, 72, 275
AvaII GGWCC 2 cut(s) 27, 72
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 324
BceAI ACGGC 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 30
BisI GCNGC 3 cut(s) 84, 338, 341
BlsI GCNGC 3 cut(s) 85, 339, 342
Bme18I GGWCC 2 cut(s) 27, 72
BmgT120I GGNCC 3 cut(s) 27, 72, 275
BmiI GGNNCC 3 cut(s) 74, 188, 211
BmsI GCATC 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse118I RCCGGY 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 324
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 47, 276
BshTI ACCGGT 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 3 cut(s) 30, 152, 177
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 2 cut(s) 47, 276
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 3 cut(s) 84, 95, 341
BspANI GGCC 2 cut(s) 47, 276
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 3 cut(s) 74, 188, 211
BspTNI GGTCTC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 213
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 160
BstMCI CGRYCG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 248
BsuRI GGCC 2 cut(s) 47, 276
BtgI CCRYGG 1 cut(s) 213
BtgZI GCGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
CfoI GCGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 3 cut(s) 27, 72, 275
CspAI ACCGGT 1 cut(s) 176
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 4 cut(s) 13, 88, 214, 223
CviJI RGCY 9 cut(s) 5, 47, 60, 220, 227, 276, 284, 337, 387
CviKI_1 RGCY 9 cut(s) 5, 47, 60, 220, 227, 276, 284, 337, 387
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 2 cut(s) 27, 72
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 4 cut(s) 16, 91, 217, 226
FaiI YATR 7 cut(s) 14, 89, 215, 224, 266, 305, 366
FaqI GGGAC 1 cut(s) 215
FatI CATG 4 cut(s) 12, 87, 213, 222
Fnu4HI GCNGC 3 cut(s) 84, 338, 341
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 3 cut(s) 84, 338, 341
FspI TGCGCA 1 cut(s) 11
GlaI GCGC 1 cut(s) 11
GluI GCNGC 3 cut(s) 84, 338, 341
HaeIII GGCC 2 cut(s) 47, 276
HapII CCGG 3 cut(s) 30, 152, 177
HhaI GCGC 1 cut(s) 12
Hin1II CATG 4 cut(s) 16, 91, 217, 226
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HinfI GANTC 1 cut(s) 330
HpaII CCGG 3 cut(s) 30, 152, 177
Hpy166II GTNNAC 2 cut(s) 72, 362
Hpy188I TCNGA 3 cut(s) 66, 120, 311
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 72, 362
Hpy99I CGWCG 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 2 cut(s) 315, 357
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 4 cut(s) 16, 91, 217, 226
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 5 cut(s) 10, 43, 165, 190, 306
Lsp1109I GCAGC 1 cut(s) 324
LweI GCATC 1 cut(s) 302
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 155, 390
MlyI GAGTC 1 cut(s) 339
MnlI CCTC 7 cut(s) 58, 60, 102, 147, 160, 231, 254
MslI CAYNNNNRTG 1 cut(s) 17
MspI CCGG 3 cut(s) 30, 152, 177
Mva1269I GAATGC 1 cut(s) 24
NcoI CCATGG 1 cut(s) 213
NdeII GATC 1 cut(s) 160
NlaIII CATG 4 cut(s) 16, 91, 217, 226
NlaIV GGNNCC 3 cut(s) 74, 188, 211
NsbI TGCGCA 1 cut(s) 11
PctI GAATGC 1 cut(s) 24
PinAI ACCGGT 1 cut(s) 176
PkrI GCNGC 3 cut(s) 85, 339, 342
Ple19I CGATCG 1 cut(s) 163
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PsiI TTATAA 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 222
PspN4I GGNNCC 3 cut(s) 74, 188, 211
PspPI GGNCC 3 cut(s) 27, 72, 275
PvuI CGATCG 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 17
SacI GAGCTC 1 cut(s) 222
SatI GCNGC 3 cut(s) 84, 338, 341
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 3 cut(s) 27, 72, 275
SchI GAGTC 1 cut(s) 339
SduI GDGCHC 1 cut(s) 222
SetI ASST 5 cut(s) 29, 71, 222, 295, 339
SfaNI GCATC 1 cut(s) 302
SinI GGWCC 2 cut(s) 27, 72
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse9I AATT 2 cut(s) 155, 390
SsiI CCGC 3 cut(s) 84, 95, 341
SstI GAGCTC 1 cut(s) 222
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 2 cut(s) 159, 328
TasI AATT 2 cut(s) 155, 390
TauI GCSGC 2 cut(s) 86, 343
TscAI CASTG 1 cut(s) 364
TseI GCWGC 1 cut(s) 337
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 27, 72
XapI RAATTY 1 cut(s) 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.