Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004051

Physical Location & Seq

Genomic Coordinates Forward (+)

755337 .. 757434

Gene Structure 2098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G009500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGTCGATGATGGCATTGCTAAGGAGCAGCAGAGGAAACATGGCGTGCGTTTTCGGCACGAGGAGGTGGAACCACGTCGCAGCCATGCCTCCGCCGTTCGATGGAGTCATGGAACCTAAGATTTTATCGCCACAGTTGGTTCTGCCCGGGTCTGATCGGGACCCAGCGCAGAATAACAACATCGGATTCGGGTTCCCCAGTTTCTTGTTCGGTGGATCGATGGAACTCATGGCTGTCCCCAAGAGAAAGACTTCTCCCCACAAGAGAGGCATAAGAAATGGCCCCAAGGCCTTGAAACCTGTTCCAGTGATAATCCGATGCAGGGCTTGCGGGCGTGTTAAGCTGCCACACTTTTTTTGTTGCAGTGGAGATCGGGGAAATGGCCATGAGCGTGATGGCTCAACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32p

Protein Analysis

138

Amino Acids

14.93

Weight (kDa)

10.61

Isoelectric Point (pI)

67.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26740 AT1G69485
fragaria_vesca	FvH4_4g13880 FvH4_4g13880
malus_domestica	MD04G1010200.v1.1
prunus_persica	Prupe.1G009500_v2.0.a1
pyrus_communis	pycom04g00830 pycom420g01310
rosa_chinensis	RchiOBHm_Chr4g0414951 RchiOBHm_Chr4g0415001 RchiOBHm_Chr6g0251041
rosa_laevigata	RLG00000008107 RLG00000015488
rosa_multiflora	Rmu_sc0001017.1_g000010
rosa_roxburghii	Rroxscaffold_5G00358730 Rroxscaffold_7G00217100
rosa_rugosa	Rorug02G0049300 Rorug04G0131100 Rorug04G0131200 Rorug04G0131300 Rorug04G0131300 Rorug05G0499800
rosa_samantha	Rh4AG190600 Rh4BG188600 Rh4CG201800 Rh4DG189200 Rh6AG007900 Rh6BG003200 Rh6CG005300 Rh6DG005600
rosa_wichuraiana	Rw4G016190 Rw4G016230 Rw6G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	95, 333
AclWI	GGATC	1 cut(s)	226
AcoI	YGGCCR	1 cut(s)	385
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	104, 325
AgsI	TTSAA	1 cut(s)	298
AjiI	CACGTC	1 cut(s)	79
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
AlwI	GGATC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	283, 291, 385
ApeKI	GCWGC	3 cut(s)	30, 83, 346
Asp700I	GAANNNNTTC	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	163, 284
AsuC2I	CCSGG	2 cut(s)	150, 151
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	387
BauI	CACGAG	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	42, 95, 333
BccI	CCATC	4 cut(s)	7, 98, 217, 392
BceAI	ACGGC	1 cut(s)	82
BcnI	CCSGG	2 cut(s)	150, 151
BisI	GCNGC	3 cut(s)	31, 84, 347
BlsI	GCNGC	3 cut(s)	32, 85, 348
Bme1390I	CCNGG	2 cut(s)	150, 151
Bme18I	GGWCC	1 cut(s)	163
BmeT110I	CYCGRG	1 cut(s)	149
BmgBI	CACGTC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	163, 284
BmiI	GGNNCC	6 cut(s)	74, 117, 164, 165, 197, 286
BmrFI	CCNGG	2 cut(s)	150, 151
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	311
BmuI	ACTGGG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	23
BpuMI	CCSGG	2 cut(s)	150, 151
Bsa29I	ATCGAT	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	149, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 325
Bse1I	ACTGG	2 cut(s)	201, 308
Bse3DI	GCAATG	1 cut(s)	17
BseCI	ATCGAT	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	149, 288
BseLI	CCNNNNNNNGG	2 cut(s)	104, 325
BseMI	GCAATG	1 cut(s)	17
BseNI	ACTGG	2 cut(s)	201, 308
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	3 cut(s)	42, 95, 333
BseYI	CCCAGC	1 cut(s)	166
BshFI	GGCC	3 cut(s)	285, 293, 387
BshVI	ATCGAT	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	2 cut(s)	176, 224
BslI	CCNNNNNNNGG	2 cut(s)	104, 325
BsmFI	GGGAC	2 cut(s)	176, 224
BsnI	GGCC	3 cut(s)	285, 293, 387
BsoBI	CYCGRG	1 cut(s)	149
Bsp143I	GATC	3 cut(s)	157, 218, 373
BspACI	CCGC	2 cut(s)	95, 333
BspANI	GGCC	3 cut(s)	285, 293, 387
BspDI	ATCGAT	1 cut(s)	221
BspLI	GGNNCC	6 cut(s)	74, 117, 164, 165, 197, 286
BspPI	GGATC	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	17
BsrI	ACTGG	2 cut(s)	201, 308
BssECI	CCNNGG	2 cut(s)	149, 288
BssMI	GATC	3 cut(s)	157, 218, 373
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstC8I	GCNNGC	3 cut(s)	49, 331, 335
BstDEI	CTNAG	2 cut(s)	23, 120
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	3 cut(s)	160, 221, 376
BstMBI	GATC	3 cut(s)	157, 218, 373
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 330, 343
BstSCI	CCNGG	2 cut(s)	148, 149
BstV1I	GCAGC	3 cut(s)	42, 95, 333
Bsu15I	ATCGAT	1 cut(s)	221
BsuRI	GGCC	3 cut(s)	285, 293, 387
BsuTUI	ATCGAT	1 cut(s)	221
BtrI	CACGTC	1 cut(s)	79
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	315, 373
Cac8I	GCNNGC	3 cut(s)	49, 331, 335
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	163, 284
Cfr9I	CCCGGG	1 cut(s)	149
ClaI	ATCGAT	1 cut(s)	221
CviAII	CATG	5 cut(s)	43, 88, 112, 232, 389
CviJI	RGCY	8 cut(s)	86, 236, 285, 293, 329, 346, 387, 402
CviKI_1	RGCY	8 cut(s)	86, 236, 285, 293, 329, 346, 387, 402
DdeI	CTNAG	2 cut(s)	23, 120
DpnI	GATC	3 cut(s)	159, 220, 375
DpnII	GATC	3 cut(s)	157, 218, 373
EaeI	YGGCCR	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	5 cut(s)	46, 91, 115, 235, 392
FaiI	YATR	6 cut(s)	44, 89, 113, 233, 275, 390
FaqI	GGGAC	2 cut(s)	176, 224
FatI	CATG	5 cut(s)	42, 87, 111, 231, 388
FauI	CCCGC	1 cut(s)	326
Fnu4HI	GCNGC	3 cut(s)	31, 84, 347
Fsp4HI	GCNGC	3 cut(s)	31, 84, 347
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	3 cut(s)	31, 84, 347
GsaI	CCCAGC	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	285, 293, 387
HapII	CCGG	1 cut(s)	150
HhaI	GCGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	46, 91, 115, 235, 392
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	2 cut(s)	108, 189
HpaII	CCGG	1 cut(s)	150
Hpy188I	TCNGA	3 cut(s)	157, 188, 320
Hpy188III	TCNNGA	1 cut(s)	161
Hpy99I	CGWCG	2 cut(s)	10, 83
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	324, 366
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 330, 343
HpyF3I	CTNAG	2 cut(s)	23, 120
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	46, 91, 115, 235, 392
HspAI	GCGC	1 cut(s)	170
KflI	GGGWCCC	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	157, 218, 373
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	6 cut(s)	163, 180, 214, 310, 315, 321
Lsp1109I	GCAGC	3 cut(s)	42, 95, 333
LweI	GCATC	1 cut(s)	311
MaeII	ACGT	1 cut(s)	78
MalI	GATC	3 cut(s)	159, 220, 375
MboI	GATC	3 cut(s)	157, 218, 373
MlsI	TGGCCA	1 cut(s)	387
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	1 cut(s)	117
MnlI	CCTC	5 cut(s)	29, 57, 60, 102, 263
Mox20I	TGGCCA	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	253
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	387
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	150, 151
MwoI	GCNNNNNNNGC	3 cut(s)	57, 330, 343
NciI	CCSGG	2 cut(s)	150, 151
NdeII	GATC	3 cut(s)	157, 218, 373
NlaIII	CATG	5 cut(s)	46, 91, 115, 235, 392
NlaIV	GGNNCC	6 cut(s)	74, 117, 164, 165, 197, 286
PceI	AGGCCT	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	32, 85, 348
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
PspFI	CCCAGC	1 cut(s)	166
PspN4I	GGNNCC	6 cut(s)	74, 117, 164, 165, 197, 286
PspPI	GGNCC	2 cut(s)	163, 284
PspPPI	RGGWCCY	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	31, 84, 347
Sau3AI	GATC	3 cut(s)	157, 218, 373
Sau96I	GGNCC	2 cut(s)	163, 284
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	2 cut(s)	150, 151
SetI	ASST	5 cut(s)	71, 81, 121, 304, 348
SfaNI	GCATC	1 cut(s)	311
SinI	GGWCC	1 cut(s)	163
SmaI	CCCGGG	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	393
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	2 cut(s)	95, 333
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	148, 149
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	138
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	8, 102, 221
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	315, 373
TseI	GCWGC	3 cut(s)	30, 83, 346
TspMI	CCCGGG	1 cut(s)	149
TspRI	CASTG	2 cut(s)	315, 373
VpaK11BI	GGWCC	1 cut(s)	163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	395
XmaI	CCCGGG	1 cut(s)	149
XmnI	GAANNNNTTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.