Rorug04G0131100

Ribosomal L32p protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004051
Physical Location & Seq
Forward (+)
21058323 .. 21058916
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0131100.1

Sequence Viewer

Length: 594 bp
ATGCATGTGGATGGGGTTGACCTAGATAAGGTTGTCTTTACTGAGCTTAATTATTGGGCTTTTGATTTGGGTTACATCCAAGGCCCAATAGCTTATTGGTTTAGAATACGTGGCTCAGAACCAGGGACTGGGTACTTGCCTATAGTGAACGATGCAGATGCAGTTGACATGTTACAGTTTATTCCAGTTGGAAGGAAGGTTTTGCATGTCTATATGGTGTGTTTAGCTCGAAGGATAAACTTCACACCATGGGACTTGGAGCAGGACGATGGAGATCCTGACCATTTGCTGTATTTCGGTCACTTTATTGAGGACCTGCCCTTGACAGATGATGAGGAAGTAGTGGCAGACGAGGAAGAGGTGAATTTGGAAGATGTTTTCAACTTTGCCCAAGTTAACGAGCCAAGCTCTGGTGTTGGACCTGAGCCAGATGTGGGTGGAAGCAACCAGCCATTTGATGGGCCACGTGAGGTGCCTACTGATGGGCCAAGAAATGTGAATAGGAGTAGGCCAAGGAATGTCAACAGAGGTGGGCAAAGGAATGTGAACAGAGCTGGGCCAAGAAATTTCAATAGTGATGGGTTTAGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L32p

Protein Analysis

197

Amino Acids

22.17

Weight (kDa)

4.37

Isoelectric Point (pI)

37.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 592
Acc36I ACCTGC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 472
AccB7I CCANNNNNTGG 3 cut(s) 128, 410, 458
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 2 cut(s) 364, 565
AcvI CACGTG 1 cut(s) 467
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 6 cut(s) 28, 128, 410, 434, 458, 482
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 2 cut(s) 382, 571
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 6 cut(s) 46, 92, 227, 408, 554, 588
AluI AGCT 6 cut(s) 46, 92, 227, 408, 554, 588
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 5 cut(s) 82, 461, 485, 509, 557
ApoI RAATTY 2 cut(s) 364, 565
AspS9I GGNCC 6 cut(s) 83, 313, 419, 461, 485, 557
AsuHPI GGTGA 1 cut(s) 373
AvaII GGWCC 2 cut(s) 313, 419
BanI GGYRCC 1 cut(s) 472
BbrPI CACGTG 1 cut(s) 467
BccI CCATC 5 cut(s) 5, 263, 452, 476, 572
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciT130I CCWGG 1 cut(s) 123
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 324
Bme1390I CCNGG 1 cut(s) 123
Bme18I GGWCC 2 cut(s) 313, 419
BmgT120I GGNCC 6 cut(s) 83, 313, 419, 461, 485, 557
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 123
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 142, 148
BmuI ACTGGG 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 392, 424
Bpu10I CCTNAGC 1 cut(s) 423
BsaAI YACGTR 2 cut(s) 110, 467
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 4 cut(s) 79, 122, 248, 512
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 128, 410, 434, 458, 482
Bse1I ACTGG 2 cut(s) 133, 185
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 4 cut(s) 79, 122, 248, 512
BseGI GGATG 2 cut(s) 16, 75
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 6 cut(s) 28, 128, 410, 434, 458, 482
BseMII CTCAG 3 cut(s) 33, 129, 414
BseNI ACTGG 2 cut(s) 133, 185
BseYI CCCAGC 1 cut(s) 554
BshFI GGCC 5 cut(s) 84, 463, 487, 511, 559
BshNI GGYRCC 1 cut(s) 472
BslFI GGGAC 2 cut(s) 139, 266
BslI CCNNNNNNNGG 6 cut(s) 28, 128, 410, 434, 458, 482
BsmFI GGGAC 2 cut(s) 139, 266
BsnI GGCC 5 cut(s) 84, 463, 487, 511, 559
Bsp143I GATC 1 cut(s) 274
Bsp19I CCATGG 1 cut(s) 248
BspANI GGCC 5 cut(s) 84, 463, 487, 511, 559
BspCNI CTCAG 3 cut(s) 34, 128, 415
BspLI GGNNCC 1 cut(s) 474
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 472
BsrI ACTGG 2 cut(s) 133, 185
BssECI CCNNGG 4 cut(s) 79, 122, 248, 512
BssMI GATC 1 cut(s) 274
BssT1I CCWWGG 3 cut(s) 79, 248, 512
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 177
Bst6I CTCTTC 1 cut(s) 351
BstBAI YACGTR 2 cut(s) 110, 467
BstDEI CTNAG 3 cut(s) 42, 115, 423
BstDSI CCRYGG 1 cut(s) 248
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 2 cut(s) 16, 75
BstKTI GATC 1 cut(s) 277
BstMBI GATC 1 cut(s) 274
BstNI CCWGG 1 cut(s) 123
BstNSI RCATGY 3 cut(s) 8, 172, 209
BstSCI CCNGG 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 5 cut(s) 84, 463, 487, 511, 559
BtgI CCRYGG 1 cut(s) 248
BtsCI GGATG 2 cut(s) 16, 75
BveI ACCTGC 1 cut(s) 324
CaiI CAGNNNCTG 1 cut(s) 128
Cfr13I GGNCC 6 cut(s) 83, 313, 419, 461, 485, 557
Csp6I GTAC 1 cut(s) 133
CspCI CAANNNNNGTGG 2 cut(s) 511, 546
CviAII CATG 4 cut(s) 5, 169, 206, 249
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 3 cut(s) 42, 115, 423
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 351
EarI CTCTTC 1 cut(s) 351
Eco130I CCWWGG 3 cut(s) 79, 248, 512
Eco47I GGWCC 2 cut(s) 313, 419
Eco72I CACGTG 1 cut(s) 467
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 3 cut(s) 79, 248, 512
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 79, 248, 512
FaeI CATG 4 cut(s) 8, 172, 209, 252
FaiI YATR 8 cut(s) 6, 143, 170, 207, 213, 215, 250, 592
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FaqI GGGAC 2 cut(s) 139, 266
FatI CATG 4 cut(s) 4, 168, 205, 248
FokI GGATG 2 cut(s) 23, 62
FspBI CTAG 1 cut(s) 23
GsaI CCCAGC 1 cut(s) 558
HaeIII GGCC 5 cut(s) 84, 463, 487, 511, 559
Hin1II CATG 4 cut(s) 8, 172, 209, 252
HincII GTYRAC 4 cut(s) 19, 166, 397, 523
HindII GTYRAC 4 cut(s) 19, 166, 397, 523
HpaI GTTAAC 1 cut(s) 397
HphI GGTGA 1 cut(s) 373
Hpy166II GTNNAC 6 cut(s) 19, 148, 166, 397, 523, 547
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 6 cut(s) 19, 148, 166, 397, 523, 547
HpyAV CCTTC 3 cut(s) 186, 190, 225
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4IV ACGT 2 cut(s) 109, 466
HpyCH4V TGCA 4 cut(s) 4, 155, 161, 205
HpyF3I CTNAG 3 cut(s) 42, 115, 423
HpySE526I ACGT 2 cut(s) 109, 466
Hsp92II CATG 4 cut(s) 8, 172, 209, 252
KspAI GTTAAC 1 cut(s) 397
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 259
LweI GCATC 2 cut(s) 142, 148
MaeI CTAG 1 cut(s) 23
MaeII ACGT 2 cut(s) 109, 466
MaeIII GTNAC 3 cut(s) 71, 171, 299
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 2 cut(s) 368, 383
MflI RGATCY 1 cut(s) 274
MluCI AATT 3 cut(s) 49, 364, 565
MmeI TCCRAC 2 cut(s) 169, 397
MnlI CCTC 6 cut(s) 304, 328, 346, 352, 463, 521
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 48, 396
MslI CAYNNNNRTG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
NcoI CCATGG 1 cut(s) 248
NdeII GATC 1 cut(s) 274
NlaIII CATG 4 cut(s) 8, 172, 209, 252
NlaIV GGNNCC 1 cut(s) 474
NmuCI GTSAC 1 cut(s) 299
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 3 cut(s) 8, 172, 209
PciI ACATGT 1 cut(s) 168
PflMI CCANNNNNTGG 3 cut(s) 128, 410, 458
PmaCI CACGTG 1 cut(s) 467
PmlI CACGTG 1 cut(s) 467
Ppu21I YACGTR 2 cut(s) 110, 467
PpuMI RGGWCCY 1 cut(s) 313
PscI ACATGT 1 cut(s) 168
PsiI TTATAA 1 cut(s) 592
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 1 cut(s) 121
PspCI CACGTG 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 554
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 1 cut(s) 474
PspPI GGNCC 6 cut(s) 83, 313, 419, 461, 485, 557
PspPPI RGGWCCY 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 2 cut(s) 48, 396
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 6 cut(s) 83, 313, 419, 461, 485, 557
ScrFI CCNGG 1 cut(s) 123
SfaNI GCATC 2 cut(s) 142, 148
SfcI CTRYAG 1 cut(s) 141
SinI GGWCC 2 cut(s) 313, 419
SmiMI CAYNNNNRTG 1 cut(s) 9
Sse9I AATT 3 cut(s) 49, 364, 565
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 3 cut(s) 79, 248, 512
TaaI ACNGT 1 cut(s) 177
TaiI ACGT 2 cut(s) 112, 469
TaqI TCGA 1 cut(s) 229
TaqII GACCGA 1 cut(s) 287
TasI AATT 3 cut(s) 49, 364, 565
Tru1I TTAA 2 cut(s) 48, 396
Tru9I TTAA 2 cut(s) 48, 396
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
Van91I CCANNNNNTGG 3 cut(s) 128, 410, 458
VpaK11BI GGWCC 2 cut(s) 313, 419
XagI CCTNNNNNAGG 1 cut(s) 26
XapI RAATTY 2 cut(s) 364, 565
XceI RCATGY 3 cut(s) 8, 172, 209
XcmI CCANNNNNNNNNTGG 2 cut(s) 93, 455
XspI CTAG 1 cut(s) 23
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.