Rw4G016190

Ribosomal L32p protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0004051
Physical Location & Seq
Reverse (-)
37147345 .. 37148612
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016190.1

Sequence Viewer

Length: 183 bp
ATGGAGATCATGGCTGTTCCCAAGAGGAAGACTACCCCCCACAAGAGAGGCATAAGAAATGGCCCGAAAGCTCTGAAGCTTGTTCCTGTGATAATCCGATATAGGAGCTGTGGTCGAGTCAAGCTGCCACATTATTATTGTTGCAGTGGACATAGGGGAAATACCCGTGAGCAGGAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L32p

Protein Analysis

60

Amino Acids

6.93

Weight (kDa)

10.5

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L32p PF01783 5 - 54 7e-09 Ribosomal L32p protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 172
AluBI AGCT 4 cut(s) 71, 79, 108, 124
AluI AGCT 4 cut(s) 71, 79, 108, 124
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 111
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 111
BshFI GGCC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 172
BsnI GGCC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 6
BspANI GGCC 1 cut(s) 63
BssMI GATC 1 cut(s) 6
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstV1I GCAGC 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 35
BsuRI GGCC 1 cut(s) 63
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 62
CviAII CATG 1 cut(s) 10
CviJI RGCY 6 cut(s) 14, 63, 71, 79, 108, 124
CviKI_1 RGCY 6 cut(s) 14, 63, 71, 79, 108, 124
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 95
FaeI CATG 1 cut(s) 13
FaiI YATR 5 cut(s) 11, 53, 102, 153, 181
FatI CATG 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 125
HaeIII GGCC 1 cut(s) 63
Hin1II CATG 1 cut(s) 13
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 75, 98
Hpy8I GTNNAC 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 144
Hsp92II CATG 1 cut(s) 13
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 2 cut(s) 99, 158
Lsp1109I GCAGC 1 cut(s) 111
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 1 cut(s) 40
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 3 cut(s) 18, 41, 169
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 13
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PspPI GGNCC 1 cut(s) 62
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 62
SchI GAGTC 1 cut(s) 126
SetI ASST 5 cut(s) 73, 81, 110, 126, 180
TaqI TCGA 1 cut(s) 115
TscAI CASTG 1 cut(s) 151
TseI GCWGC 1 cut(s) 124
TspRI CASTG 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.