Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004051

Physical Location & Seq

Genomic Coordinates Reverse (-)

39451837 .. 39453302

Gene Structure 1466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38528

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTTAGGAGCAGTAGTGAGAACATAGCGTGCATTTTGGGCATCAGGAGGTGGAACCACATCGTAGCAATTCCTCCGTCCTCGGATGGGGCCATTCAACGGACAATGATTTCATCGCCACCGTTCGCGCTGCCAGAGTTTTATCGGGAGACTAAGAAGGATAACAAAGTCGGATTCGGGTTGCCCAGTTTTCTGTTCGGTGGATCGATGGAGCTCATGGCTGTCCCCAAGAGGAAGACTACTCCCCACAAGAGAGGCACAAGAAATGGCCCGAAAGCTCTGAAGCCTGTTCCTGTGATAATCCGATGCACATCACGTAACAATTTTAATTTCAGGAGCTGTGGTCGAGTCAAGCTGCCACATTATTATTGTTGCAGTGGACATAGGGGAAATACCGGTGAGCGGGAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32p

Protein Analysis

137

Amino Acids

15.35

Weight (kDa)

10.44

Isoelectric Point (pI)

76.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26740 AT1G69485
fragaria_vesca	FvH4_4g13880 FvH4_4g13880
malus_domestica	MD04G1010200.v1.1
prunus_persica	Prupe.1G009500_v2.0.a1
pyrus_communis	pycom04g00830 pycom420g01310
rosa_chinensis	RchiOBHm_Chr4g0414951 RchiOBHm_Chr4g0415001 RchiOBHm_Chr6g0251041
rosa_laevigata	RLG00000008107 RLG00000015488
rosa_multiflora	Rmu_sc0001017.1_g000010
rosa_roxburghii	Rroxscaffold_5G00358730 Rroxscaffold_7G00217100
rosa_rugosa	Rorug02G0049300 Rorug04G0131100 Rorug04G0131200 Rorug04G0131300 Rorug04G0131300 Rorug05G0499800
rosa_samantha	Rh4AG190600 Rh4BG188600 Rh4CG201800 Rh4DG189200 Rh6AG007900 Rh6BG003200 Rh6CG005300 Rh6DG005600
rosa_wichuraiana	Rw4G016190 Rw4G016230 Rw6G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	403
AccII	CGCG	1 cut(s)	128
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	87, 99, 402
AgeI	ACCGGT	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	4 cut(s)	214, 278, 339, 355
AluI	AGCT	4 cut(s)	214, 278, 339, 355
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	211
AlwNI	CAGNNNCTG	1 cut(s)	339
AoxI	GGCC	2 cut(s)	90, 268
ApeKI	GCWGC	2 cut(s)	130, 355
AsiGI	ACCGGT	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	90, 269
AsuHPI	GGTGA	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	117, 342
BccI	CCATC	2 cut(s)	80, 202
BcoDI	GTCTC	1 cut(s)	143
BisI	GCNGC	2 cut(s)	131, 356
BlsI	GCNGC	2 cut(s)	132, 357
BmgT120I	GGNCC	2 cut(s)	90, 269
BmiI	GGNNCC	2 cut(s)	56, 91
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	51, 296
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	5
Bsa29I	ATCGAT	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	395
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 328, 358
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 99, 402
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	186
Bse8I	GATNNNNATC	1 cut(s)	310
BseCI	ATCGAT	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	91
BseJI	GATNNNNATC	1 cut(s)	310
BseLI	CCNNNNNNNGG	3 cut(s)	87, 99, 402
BseNI	ACTGG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	117, 342
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	92, 270
BshTI	ACCGGT	1 cut(s)	395
BshVI	ATCGAT	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	87, 99, 402
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	92, 270
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	203
BspACI	CCGC	1 cut(s)	403
BspANI	GGCC	2 cut(s)	92, 270
BspDI	ATCGAT	1 cut(s)	206
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	2 cut(s)	56, 91
BspPI	GGATC	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	5, 153
BstF5I	GGATG	1 cut(s)	91
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	1 cut(s)	206
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	117, 342
BstV2I	GAAGAC	1 cut(s)	242
Bsu15I	ATCGAT	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	92, 270
BsuTUI	ATCGAT	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	31
CaiI	CAGNNNCTG	1 cut(s)	339
CfoI	GCGC	1 cut(s)	130
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	90, 269
ClaI	ATCGAT	1 cut(s)	206
CspAI	ACCGGT	1 cut(s)	395
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	8 cut(s)	92, 214, 221, 270, 278, 286, 339, 355
CviKI_1	RGCY	8 cut(s)	92, 214, 221, 270, 278, 286, 339, 355
DdeI	CTNAG	2 cut(s)	5, 153
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	1 cut(s)	220
FaiI	YATR	4 cut(s)	26, 218, 384, 412
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	396
Fnu4HI	GCNGC	2 cut(s)	131, 356
FokI	GGATG	1 cut(s)	98
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	131, 356
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	2 cut(s)	131, 356
HaeIII	GGCC	2 cut(s)	92, 270
HapII	CCGG	1 cut(s)	396
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HinfI	GANTC	2 cut(s)	174, 348
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	4 cut(s)	85, 173, 282, 305
Hpy188III	TCNNGA	3 cut(s)	46, 146, 334
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	316
HpyCH4V	TGCA	3 cut(s)	33, 309, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	2 cut(s)	5, 153
HpySE526I	ACGT	1 cut(s)	316
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	203
LmnI	GCTCC	3 cut(s)	9, 211, 336
LpnPI	CCDG	7 cut(s)	31, 147, 199, 300, 306, 319, 409
Lsp1109I	GCAGC	2 cut(s)	117, 342
LweI	GCATC	2 cut(s)	51, 296
MaeII	ACGT	1 cut(s)	316
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	1 cut(s)	205
MbiI	CCGCTC	1 cut(s)	403
MboI	GATC	1 cut(s)	203
MboII	GAAGA	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	3 cut(s)	69, 322, 328
MlyI	GAGTC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	6 cut(s)	42, 84, 91, 225, 248, 400
MseI	TTAA	1 cut(s)	327
MspI	CCGG	1 cut(s)	396
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	39
NdeII	GATC	1 cut(s)	203
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	56, 91
PfeI	GAWTC	1 cut(s)	174
PinAI	ACCGGT	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	132, 357
PleI	GAGTC	1 cut(s)	356
PpsI	GAGTC	1 cut(s)	356
Ppu21I	YACGTR	1 cut(s)	317
Psp124BI	GAGCTC	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	56, 91
PspPI	GGNCC	2 cut(s)	90, 269
PstNI	CAGNNNCTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	2 cut(s)	131, 356
Sau3AI	GATC	1 cut(s)	203
Sau96I	GGNCC	2 cut(s)	90, 269
SchI	GAGTC	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	7 cut(s)	53, 216, 280, 319, 341, 357, 411
SfaNI	GCATC	2 cut(s)	51, 296
Sse9I	AATT	3 cut(s)	69, 322, 328
SsiI	CCGC	1 cut(s)	403
SstI	GAGCTC	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	123
TaiI	ACGT	1 cut(s)	319
TaqI	TCGA	2 cut(s)	206, 346
TasI	AATT	3 cut(s)	69, 322, 328
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	2 cut(s)	130, 355
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	2 cut(s)	66, 115
TspRI	CASTG	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.