Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004051

Physical Location & Seq

Genomic Coordinates Reverse (-)

37332902 .. 37334295

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG189200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCGTCGAAGCTTTCCATGCTTAGGAGCGCTAGTGAGAACATGGCGTGCATTTTCGGCATCAGGAGGTGGAACCACATCGCAGCAATTCCTCCGTCGTCGGATGGGGCCATTGCCCGGACGATGATTTCATCGCCACCGTTCGCTCTGCCAGAGTATGATTGCGAGCCTGAGAAGGATAACAAAGTCGGATTCGGGTTGCCCAGTTTTCTGTTCGGTGGGTCCATGGAGCTCATGGCTGTCCCCAAGAGGAAGACTACTCCCCACAAGAGAGGCATAAGAAATGGTCCGAAAGCTCTGAAGCCTGTTCCTGTGATAATCCGATGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32p

Protein Analysis

110

Amino Acids

12.07

Weight (kDa)

10.12

Isoelectric Point (pI)

78.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26740 AT1G69485
fragaria_vesca	FvH4_4g13880 FvH4_4g13880
malus_domestica	MD04G1010200.v1.1
prunus_persica	Prupe.1G009500_v2.0.a1
pyrus_communis	pycom04g00830 pycom420g01310
rosa_chinensis	RchiOBHm_Chr4g0414951 RchiOBHm_Chr4g0415001 RchiOBHm_Chr6g0251041
rosa_laevigata	RLG00000008107 RLG00000015488
rosa_multiflora	Rmu_sc0001017.1_g000010
rosa_roxburghii	Rroxscaffold_5G00358730 Rroxscaffold_7G00217100
rosa_rugosa	Rorug02G0049300 Rorug04G0131100 Rorug04G0131200 Rorug04G0131300 Rorug04G0131300 Rorug05G0499800
rosa_samantha	Rh4AG190600 Rh4BG188600 Rh4CG201800 Rh4DG189200 Rh6AG007900 Rh6BG003200 Rh6CG005300 Rh6DG005600
rosa_wichuraiana	Rw4G016190 Rw4G016230 Rw6G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	318
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	24, 117
AluBI	AGCT	3 cut(s)	13, 232, 296
AluI	AGCT	3 cut(s)	13, 232, 296
Alw21I	GWGCWC	1 cut(s)	234
Aor51HI	AGCGCT	1 cut(s)	31
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	3 cut(s)	108, 222, 287
AsuC2I	CCSGG	1 cut(s)	118
AvaII	GGWCC	2 cut(s)	222, 287
BanII	GRGCYC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	118
BfaI	CTAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	318
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	2 cut(s)	222, 287
BmgT120I	GGNCC	3 cut(s)	108, 222, 287
BmiI	GGNNCC	3 cut(s)	74, 109, 223
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	69, 314
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 117
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	2 cut(s)	24, 117
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	95
BshFI	GGCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	24, 117
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp19I	CCATGG	1 cut(s)	225
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	3 cut(s)	74, 109, 223
BspMI	ACCTGC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	225
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	49, 167
BstDEI	CTNAG	2 cut(s)	23, 171
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 57
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	225
BtgZI	GCGATG	2 cut(s)	64, 117
BtsCI	GGATG	1 cut(s)	109
BveI	ACCTGC	1 cut(s)	318
Cac8I	GCNNGC	2 cut(s)	49, 167
CfoI	GCGC	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	108, 222, 287
CviAII	CATG	4 cut(s)	19, 43, 226, 235
CviJI	RGCY	7 cut(s)	13, 110, 169, 232, 239, 296, 304
CviKI_1	RGCY	7 cut(s)	13, 110, 169, 232, 239, 296, 304
DdeI	CTNAG	2 cut(s)	23, 171
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	2 cut(s)	222, 287
Eco47III	AGCGCT	1 cut(s)	31
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	4 cut(s)	22, 46, 229, 238
FaiI	YATR	6 cut(s)	20, 44, 159, 227, 236, 278
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	4 cut(s)	18, 42, 225, 234
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	1 cut(s)	118
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	22, 46, 229, 238
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	1 cut(s)	118
Hpy188I	TCNGA	5 cut(s)	103, 191, 291, 300, 323
Hpy188III	TCNNGA	1 cut(s)	64
Hpy99I	CGWCG	3 cut(s)	10, 100, 103
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4V	TGCA	2 cut(s)	51, 327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 57
HpyF3I	CTNAG	2 cut(s)	23, 171
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	22, 46, 229, 238
HspAI	GCGC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	27, 229
LpnPI	CCDG	8 cut(s)	49, 131, 165, 183, 217, 313, 318, 324
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	2 cut(s)	69, 314
MaeI	CTAG	1 cut(s)	33
MboII	GAAGA	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	1 cut(s)	87
MmeI	TCCRAC	2 cut(s)	81, 169
MnlI	CCTC	4 cut(s)	60, 102, 243, 266
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	19, 57
NciI	CCSGG	1 cut(s)	118
NcoI	CCATGG	1 cut(s)	225
NlaIII	CATG	4 cut(s)	22, 46, 229, 238
NlaIV	GGNNCC	3 cut(s)	74, 109, 223
PfeI	GAWTC	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	85
Psp124BI	GAGCTC	1 cut(s)	234
PspN4I	GGNNCC	3 cut(s)	74, 109, 223
PspPI	GGNCC	3 cut(s)	108, 222, 287
SacI	GAGCTC	1 cut(s)	234
SatI	GCNGC	1 cut(s)	84
Sau96I	GGNCC	3 cut(s)	108, 222, 287
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	5 cut(s)	15, 71, 234, 298, 332
SfaNI	GCATC	2 cut(s)	69, 314
SinI	GGWCC	2 cut(s)	222, 287
Sse9I	AATT	1 cut(s)	87
SspMI	CTAG	1 cut(s)	33
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	141
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	192
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	120
TspGWI	ACGGA	1 cut(s)	84
VpaK11BI	GGWCC	2 cut(s)	222, 287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.