AT1G69485

Ribosomal L32p protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004051
Physical Location & Seq
Reverse (-)
26118229 .. 26119710
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69485.1

Sequence Viewer

Length: 192 bp
ATGGAGCTAATGGCTGTGCCCAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAGAAATGGACCAAAGGCCTTTAAACCTACTCCTGTGATCATCCGTTGCAGGAGTTGTGGGCGAGTTAAGCTGCCACATTTCTACTGCTGCAGTGGTGAGCGGGCAATACCTGATGAACAAAGCAATTCAAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L32p

Protein Analysis

63

Amino Acids

7.12

Weight (kDa)

10.13

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L32p PF01783 5 - 49 8.8e-11 Ribosomal L32p protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 154
AciI CCGC 1 cut(s) 154
AgsI TTSAA 1 cut(s) 183
AluBI AGCT 2 cut(s) 7, 124
AluI AGCT 2 cut(s) 7, 124
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 124, 141
AspS9I GGNCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 111, 128
BclI TGATCA 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 142
BisI GCNGC 2 cut(s) 125, 142
BlsI GCNGC 2 cut(s) 126, 143
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BseGI GGATG 1 cut(s) 93
BseSI GKGCMC 1 cut(s) 21
BseXI GCAGC 2 cut(s) 111, 128
BshFI GGCC 1 cut(s) 71
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 1 cut(s) 154
BspANI GGCC 1 cut(s) 71
BspMAI CTGCAG 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 154
BssMI GATC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 156
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 142
BstSLI GKGCMC 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 111, 128
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 1 cut(s) 93
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 62
CviJI RGCY 4 cut(s) 7, 14, 71, 124
CviKI_1 RGCY 4 cut(s) 7, 14, 71, 124
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DraI TTTAAA 1 cut(s) 76
Eco147I AGGCCT 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 62
FauI CCCGC 1 cut(s) 147
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 125, 142
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 125, 142
GluI GCNGC 2 cut(s) 125, 142
HaeIII GGCC 1 cut(s) 71
HphI GGTGA 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 102, 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 88, 99, 177
Lsp1109I GCAGC 2 cut(s) 111, 128
MalI GATC 1 cut(s) 92
MbiI CCGCTC 1 cut(s) 154
MboI GATC 1 cut(s) 90
MboII GAAGA 2 cut(s) 37, 40
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 178
MnlI CCTC 1 cut(s) 41
MseI TTAA 2 cut(s) 75, 120
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 1 cut(s) 90
PceI AGGCCT 1 cut(s) 71
PkrI GCNGC 2 cut(s) 126, 143
PspPI GGNCC 1 cut(s) 62
PstI CTGCAG 1 cut(s) 146
SaqAI TTAA 2 cut(s) 75, 120
SatI GCNGC 2 cut(s) 125, 142
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 62
SduI GDGCHC 1 cut(s) 21
SetI ASST 4 cut(s) 9, 82, 126, 166
SfcI CTRYAG 1 cut(s) 142
SgeI CNNG 7 cut(s) 34, 55, 98, 115, 128, 167, 176
SinI GGWCC 1 cut(s) 62
Sse9I AATT 1 cut(s) 178
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 1 cut(s) 154
StuI AGGCCT 1 cut(s) 71
TasI AATT 1 cut(s) 178
Tru1I TTAA 2 cut(s) 75, 120
Tru9I TTAA 2 cut(s) 75, 120
TscAI CASTG 1 cut(s) 151
TseI GCWGC 2 cut(s) 124, 141
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.