MD04G1010200.v1.1

Ribosomal L32p protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0004051
Physical Location & Seq
Forward (+)
1138238 .. 1140541
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1010200.v1.1.491

Sequence Viewer

Length: 411 bp
ATGGCGTCCTTGATGACAATGCTAAGAAGCAGCAGAGGGAACGCTTCCATCTTCGGCACTAAGAGGTGGGCCCACATCGCTGCCATGCCTCCGCCGATGGGTGGGGCTATGCTTCAACCTAACATTTCATCGCCACCGTTGGTTCTGCCAGAGTCCGATCGGGATCCAGAGAAGAACAGCAACATCGGGTTCGGGTTCCCGAGTTTCTTGTTCGGTGGATCCATGGAGCTCATGGCTGTCCCCAAGAGGAAGACTTCTCCCCACAAGAGAGGCATAAGAAATGGCCCGAAGGCTCTGAAACCTGTTCCGGTGATAGTTCGATGCAGGGGTTGTGGTCGTGTCAAGCTACCGCACTTTTATTGTTGTAGCGGTAGAGAAAATGCCGGTGAGCATGATGGCTCAAGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L32p

Protein Analysis

137

Amino Acids

14.73

Weight (kDa)

10.48

Isoelectric Point (pI)

73.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L32p PF01783 79 - 124 3.6e-11 Ribosomal L32p protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 92, 350, 369
AclWI GGATC 4 cut(s) 158, 171, 213, 226
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 98, 101
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 2 cut(s) 229, 346
AluI AGCT 2 cut(s) 229, 346
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 4 cut(s) 158, 171, 213, 226
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 2 cut(s) 69, 283
ApaI GGGCCC 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 30, 80
AspS9I GGNCC 3 cut(s) 69, 70, 284
AsuHPI GGTGA 2 cut(s) 322, 398
AvaI CYCGRG 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 73
BamHI GGATCC 2 cut(s) 163, 218
BanII GRGCYC 2 cut(s) 73, 231
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 42, 67
BccI CCATC 3 cut(s) 56, 91, 389
BisI GCNGC 2 cut(s) 31, 81
BlsI GCNGC 2 cut(s) 32, 82
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 69, 70, 284
BmiI GGNNCC 4 cut(s) 71, 165, 197, 220
BmsI GCATC 1 cut(s) 311
BpiI GAAGAC 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 385
BsaBI GATNNNNATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 307
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 101
Bse118I RCCGGY 1 cut(s) 383
Bse8I GATNNNNATC 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 222
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 98, 101
BseSI GKGCMC 1 cut(s) 73
BseXI GCAGC 2 cut(s) 42, 67
Bsh1285I CGRYCG 1 cut(s) 160
BshFI GGCC 2 cut(s) 71, 285
BsiEI CGRYCG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 2 cut(s) 308, 384
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 2 cut(s) 98, 101
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 2 cut(s) 71, 285
BsoBI CYCGRG 1 cut(s) 199
Bsp120I GGGCCC 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 73, 231
Bsp143I GATC 3 cut(s) 157, 163, 218
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 3 cut(s) 92, 350, 369
BspANI GGCC 2 cut(s) 71, 285
BspLI GGNNCC 4 cut(s) 71, 165, 197, 220
BspPI GGATC 4 cut(s) 158, 171, 213, 226
BsrFI RCCGGY 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 157, 163, 218
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 2 cut(s) 23, 60
BstDSI CCRYGG 1 cut(s) 222
BstKTI GATC 3 cut(s) 160, 166, 221
BstMBI GATC 3 cut(s) 157, 163, 218
BstMCI CGRYCG 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 42, 67
BstV2I GAAGAC 1 cut(s) 257
BstX2I RGATCY 2 cut(s) 163, 218
BstYI RGATCY 2 cut(s) 163, 218
BsuRI GGCC 2 cut(s) 71, 285
BtgI CCRYGG 1 cut(s) 222
BtgZI GCGATG 2 cut(s) 61, 114
Cfr10I RCCGGY 1 cut(s) 383
Cfr13I GGNCC 3 cut(s) 69, 70, 284
CviAII CATG 4 cut(s) 85, 223, 232, 392
CviJI RGCY 8 cut(s) 71, 107, 229, 236, 285, 293, 346, 399
CviKI_1 RGCY 8 cut(s) 71, 107, 229, 236, 285, 293, 346, 399
DdeI CTNAG 2 cut(s) 23, 60
DpnI GATC 3 cut(s) 159, 165, 220
DpnII GATC 3 cut(s) 157, 163, 218
EciI GGCGGA 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 222
Eco24I GRGCYC 2 cut(s) 73, 231
Eco53kI GAGCTC 1 cut(s) 229
Eco88I CYCGRG 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 222
EcoT38I GRGCYC 2 cut(s) 73, 231
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 4 cut(s) 88, 226, 235, 395
FaiI YATR 6 cut(s) 86, 110, 224, 233, 275, 393
FaqI GGGAC 1 cut(s) 224
FatI CATG 4 cut(s) 84, 222, 231, 391
Fnu4HI GCNGC 2 cut(s) 31, 81
FriOI GRGCYC 2 cut(s) 73, 231
Fsp4HI GCNGC 2 cut(s) 31, 81
GluI GCNGC 2 cut(s) 31, 81
HaeIII GGCC 2 cut(s) 71, 285
HapII CCGG 2 cut(s) 308, 384
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 88, 226, 235, 395
HinfI GANTC 1 cut(s) 152
HpaII CCGG 2 cut(s) 308, 384
HphI GGTGA 2 cut(s) 322, 398
Hpy188I TCNGA 2 cut(s) 157, 297
Hpy188III TCNNGA 4 cut(s) 161, 167, 199, 402
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 23, 60
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 88, 226, 235, 395
Kzo9I GATC 3 cut(s) 157, 163, 218
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 6 cut(s) 162, 180, 310, 315, 321, 397
Lsp1109I GCAGC 2 cut(s) 42, 67
LweI GCATC 1 cut(s) 311
MalI GATC 3 cut(s) 159, 165, 220
MboI GATC 3 cut(s) 157, 163, 218
MboII GAAGA 3 cut(s) 43, 184, 262
MflI RGATCY 2 cut(s) 163, 218
MhlI GDGCHC 2 cut(s) 73, 231
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 5 cut(s) 29, 57, 99, 240, 263
MspI CCGG 2 cut(s) 308, 384
MwoI GCNNNNNNNGC 1 cut(s) 77
NcoI CCATGG 1 cut(s) 222
NdeII GATC 3 cut(s) 157, 163, 218
NlaIII CATG 4 cut(s) 88, 226, 235, 395
NlaIV GGNNCC 4 cut(s) 71, 165, 197, 220
PkrI GCNGC 2 cut(s) 32, 82
Ple19I CGATCG 1 cut(s) 160
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 231
PspN4I GGNNCC 4 cut(s) 71, 165, 197, 220
PspOMI GGGCCC 1 cut(s) 69
PspPI GGNCC 3 cut(s) 69, 70, 284
PsuI RGATCY 2 cut(s) 163, 218
PvuI CGATCG 1 cut(s) 160
SacI GAGCTC 1 cut(s) 231
SatI GCNGC 2 cut(s) 31, 81
Sau3AI GATC 3 cut(s) 157, 163, 218
Sau96I GGNCC 3 cut(s) 69, 70, 284
SchI GAGTC 1 cut(s) 161
SduI GDGCHC 2 cut(s) 73, 231
SetI ASST 5 cut(s) 68, 121, 231, 304, 348
SfaNI GCATC 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 400
SmoI CTYRAG 1 cut(s) 400
SsiI CCGC 3 cut(s) 92, 350, 369
SstI GAGCTC 1 cut(s) 231
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 319
TseI GCWGC 2 cut(s) 30, 80
TspDTI ATGAA 1 cut(s) 117
XcmI CCANNNNNNNNNTGG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.