AT1G26740

Ribosomal L32p protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004051
Physical Location & Seq
Reverse (-)
9244981 .. 9246652
1672 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26740.1

Sequence Viewer

Length: 405 bp
ATGGCGTTGAGATTGACATCGCTAAAACGCGCCGCGGTTGAGTCCTGTCGCATTTTGGAAACCCGAAGCTTAAGTCATGTCGCTGCGATGCCTTCCCCCTTGAACGGAGCTTTTGATCGCCCGATTTCTATGCCGCCGCTGGTTTTACCTGAGTTCGATCAGAATCAACCGGGTTTGATCGAAGAAAAGAGCTTCGGGTTCGGGCTTCCTAGTTTTGCTTTTAATGGATCCATGGAGCTAATGGCTGTGCCTAAGAAGAAGATTTCTAAACACAAGAGAGGGATAAGAAATGGTCCAAAGGCTCTTAAGCCTGTTCCTGTGATCATCCGTTGCAGGAGTTGCGGGCGAGTCAAGCTGCCACATTTCTTCTGTTGCAGCGGTGAGCGGCTAAACCCTACTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L32p

Protein Analysis

134

Amino Acids

14.8

Weight (kDa)

10.05

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L32p PF01783 82 - 126 1.4e-10 Ribosomal L32p protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 385
AccII CGCG 2 cut(s) 30, 35
AciI CCGC 7 cut(s) 33, 35, 134, 137, 342, 378, 385
AclWI GGATC 2 cut(s) 222, 235
AfiI CCNNNNNNNGG 1 cut(s) 104
AflII CTTAAG 2 cut(s) 70, 305
AgsI TTSAA 1 cut(s) 103
AluBI AGCT 5 cut(s) 69, 110, 192, 238, 355
AluI AGCT 5 cut(s) 69, 110, 192, 238, 355
AlwI GGATC 2 cut(s) 222, 235
ApeKI GCWGC 3 cut(s) 83, 355, 375
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 293
BamHI GGATCC 1 cut(s) 227
BbvI GCAGC 3 cut(s) 70, 342, 387
BcgI CGANNNNNNTGC 2 cut(s) 112, 146
BclI TGATCA 1 cut(s) 321
BcnI CCSGG 1 cut(s) 171
BfaI CTAG 1 cut(s) 210
BfrI CTTAAG 2 cut(s) 70, 305
BisI GCNGC 7 cut(s) 33, 84, 134, 137, 356, 376, 386
BlsI GCNGC 7 cut(s) 34, 85, 135, 138, 357, 377, 387
Bme1390I CCNGG 1 cut(s) 171
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 171
BsaBI GATNNNNATC 2 cut(s) 16, 162
BsaJI CCNNGG 2 cut(s) 33, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 104
Bse8I GATNNNNATC 2 cut(s) 16, 162
BseDI CCNNGG 2 cut(s) 33, 231
BseGI GGATG 1 cut(s) 324
BseJI GATNNNNATC 2 cut(s) 16, 162
BseLI CCNNNNNNNGG 1 cut(s) 104
BseMII CTCAG 2 cut(s) 141, 390
BseXI GCAGC 3 cut(s) 70, 342, 387
Bsh1236I CGCG 2 cut(s) 30, 35
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 104
Bsp143I GATC 5 cut(s) 115, 157, 177, 227, 321
Bsp19I CCATGG 1 cut(s) 231
BspACI CCGC 7 cut(s) 33, 35, 134, 137, 342, 378, 385
BspCNI CTCAG 2 cut(s) 142, 391
BspFNI CGCG 2 cut(s) 30, 35
BspLI GGNNCC 1 cut(s) 229
BspPI GGATC 2 cut(s) 222, 235
BspTI CTTAAG 2 cut(s) 70, 305
BsrBI CCGCTC 1 cut(s) 385
BssECI CCNNGG 2 cut(s) 33, 231
BssMI GATC 5 cut(s) 115, 157, 177, 227, 321
BssT1I CCWWGG 1 cut(s) 231
BstAFI CTTAAG 2 cut(s) 70, 305
BstAPI GCANNNNNTGC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 3 cut(s) 150, 252, 399
BstDSI CCRYGG 2 cut(s) 33, 231
BstF5I GGATG 1 cut(s) 324
BstFNI CGCG 2 cut(s) 30, 35
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 5 cut(s) 118, 160, 180, 230, 324
BstMBI GATC 5 cut(s) 115, 157, 177, 227, 321
BstMWI GCNNNNNNNGC 2 cut(s) 339, 352
BstSCI CCNGG 1 cut(s) 169
BstUI CGCG 2 cut(s) 30, 35
BstV1I GCAGC 3 cut(s) 70, 342, 387
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BtgI CCRYGG 2 cut(s) 33, 231
BtgZI GCGATG 2 cut(s) 3, 101
BtsCI GGATG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 344
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 293
Cfr42I CCGCGG 1 cut(s) 36
CviAII CATG 2 cut(s) 77, 232
DdeI CTNAG 3 cut(s) 150, 252, 399
DpnI GATC 5 cut(s) 117, 159, 179, 229, 323
DpnII GATC 5 cut(s) 115, 157, 177, 227, 321
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 2 cut(s) 80, 235
FaiI YATR 3 cut(s) 78, 131, 233
FatI CATG 2 cut(s) 76, 231
FauI CCCGC 1 cut(s) 335
FbaI TGATCA 1 cut(s) 321
Fnu4HI GCNGC 7 cut(s) 33, 84, 134, 137, 356, 376, 386
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 7 cut(s) 33, 84, 134, 137, 356, 376, 386
FspBI CTAG 1 cut(s) 210
GlaI GCGC 1 cut(s) 31
GluI GCNGC 7 cut(s) 33, 84, 134, 137, 356, 376, 386
HapII CCGG 1 cut(s) 170
HhaI GCGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 80, 235
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 3 cut(s) 41, 163, 348
HpaII CCGG 1 cut(s) 170
HphI GGTGA 1 cut(s) 392
Hpy188I TCNGA 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 333, 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 352
HpyF3I CTNAG 3 cut(s) 150, 252, 399
Hsp92II CATG 2 cut(s) 80, 235
HspAI GCGC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 321
KspI CCGCGG 1 cut(s) 36
Kzo9I GATC 5 cut(s) 115, 157, 177, 227, 321
LmnI GCTCC 2 cut(s) 107, 235
LpnPI CCDG 7 cut(s) 58, 125, 162, 183, 319, 324, 330
Lsp1109I GCAGC 3 cut(s) 70, 342, 387
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 210
MalI GATC 5 cut(s) 117, 159, 179, 229, 323
MbiI CCGCTC 1 cut(s) 385
MboI GATC 5 cut(s) 115, 157, 177, 227, 321
MboII GAAGA 4 cut(s) 194, 268, 271, 358
MflI RGATCY 1 cut(s) 227
MlyI GAGTC 2 cut(s) 50, 357
MnlI CCTC 1 cut(s) 272
MseI TTAA 3 cut(s) 71, 222, 306
MspA1I CMGCKG 3 cut(s) 35, 139, 378
MspCI CTTAAG 2 cut(s) 70, 305
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 171
MvnI CGCG 2 cut(s) 30, 35
MwoI GCNNNNNNNGC 2 cut(s) 339, 352
NciI CCSGG 1 cut(s) 171
NcoI CCATGG 1 cut(s) 231
NdeII GATC 5 cut(s) 115, 157, 177, 227, 321
NlaIII CATG 2 cut(s) 80, 235
NlaIV GGNNCC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 7 cut(s) 34, 85, 135, 138, 357, 377, 387
PleI GAGTC 2 cut(s) 49, 356
PpsI GAGTC 2 cut(s) 49, 356
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 1 cut(s) 293
PsuI RGATCY 1 cut(s) 227
SacII CCGCGG 1 cut(s) 36
SaqAI TTAA 3 cut(s) 71, 222, 306
SatI GCNGC 7 cut(s) 33, 84, 134, 137, 356, 376, 386
Sau3AI GATC 5 cut(s) 115, 157, 177, 227, 321
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 2 cut(s) 50, 357
ScrFI CCNGG 1 cut(s) 171
SetI ASST 6 cut(s) 71, 112, 151, 194, 240, 357
SfaNI GCATC 1 cut(s) 78
Sfr303I CCGCGG 1 cut(s) 36
SgrBI CCGCGG 1 cut(s) 36
SinI GGWCC 1 cut(s) 293
SmlI CTYRAG 2 cut(s) 70, 305
SmoI CTYRAG 2 cut(s) 70, 305
SsiI CCGC 7 cut(s) 33, 35, 134, 137, 342, 378, 385
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 169
StyI CCWWGG 1 cut(s) 231
TaqI TCGA 2 cut(s) 156, 180
TauI GCSGC 4 cut(s) 35, 136, 139, 388
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 3 cut(s) 71, 222, 306
Tru9I TTAA 3 cut(s) 71, 222, 306
TseI GCWGC 3 cut(s) 83, 355, 375
TspGWI ACGGA 2 cut(s) 120, 317
Vha464I CTTAAG 2 cut(s) 70, 305
VpaK11BI GGWCC 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XspI CTAG 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.