Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004051

Physical Location & Seq

Genomic Coordinates Reverse (-)

32851927 .. 32853435

Gene Structure 1509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG188600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGTCCAAGATTTCAATGCTTAGGAGCGGTAGTGAGAACGTAGCGTGCATTTTCGGCATCAGGAGGTGGAACCACATCGCAGCAATTCCTCCGTCGTCCGATGGGGCCATTGCCCGGACGATAATTTCATCGCCACCGTTCGCTCTGCCAGAGTTTGATCGGGAGCCAGAGAAGGATAACAAAGTCGGATTCGGGTTCCCCAGTTTTCTGTTCGGTGGGTCCATGGAGCTCATGGCTGTCCCCAAGAGGAAGACTACTCCCCACAAGAGAGGCATAAGAAATGGCCCGAAAGCTCTGAAGCCTGTTCCTGTGATAATCCGATGCAGAGCATCACATCATTTTGACCTCTTAACAATTTTGGTTGCAGGAGCTGTGGTCGAGTCAAGCTGCCACATTATTATTGTTGCAGCGGACATAGGGGAAATACCGGTGAGCGGGAGGTATAGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32p

Protein Analysis

151

Amino Acids

16.36

Weight (kDa)

9.94

Isoelectric Point (pI)

67.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26740 AT1G69485
fragaria_vesca	FvH4_4g13880 FvH4_4g13880
malus_domestica	MD04G1010200.v1.1
prunus_persica	Prupe.1G009500_v2.0.a1
pyrus_communis	pycom04g00830 pycom420g01310
rosa_chinensis	RchiOBHm_Chr4g0414951 RchiOBHm_Chr4g0415001 RchiOBHm_Chr6g0251041
rosa_laevigata	RLG00000008107 RLG00000015488
rosa_multiflora	Rmu_sc0001017.1_g000010
rosa_roxburghii	Rroxscaffold_5G00358730 Rroxscaffold_7G00217100
rosa_rugosa	Rorug02G0049300 Rorug04G0131100 Rorug04G0131200 Rorug04G0131300 Rorug04G0131300 Rorug05G0499800
rosa_samantha	Rh4AG190600 Rh4BG188600 Rh4CG201800 Rh4DG189200 Rh6AG007900 Rh6BG003200 Rh6CG005300 Rh6DG005600
rosa_wichuraiana	Rw4G016190 Rw4G016230 Rw6G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	30, 438
AciI	CCGC	3 cut(s)	30, 413, 438
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	2 cut(s)	117, 437
AgeI	ACCGGT	1 cut(s)	430
AgsI	TTSAA	1 cut(s)	18
AluBI	AGCT	5 cut(s)	232, 296, 374, 390, 452
AluI	AGCT	5 cut(s)	232, 296, 374, 390, 452
Alw21I	GWGCWC	1 cut(s)	234
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	108, 286
ApeKI	GCWGC	3 cut(s)	83, 390, 410
AsiGI	ACCGGT	1 cut(s)	430
AspS9I	GGNCC	3 cut(s)	108, 222, 287
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	95, 377, 422
BccI	CCATC	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	118
BisI	GCNGC	3 cut(s)	84, 391, 411
BlsI	GCNGC	3 cut(s)	85, 392, 412
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	3 cut(s)	108, 222, 287
BmiI	GGNNCC	5 cut(s)	74, 109, 168, 200, 223
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	69, 314, 341
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	118
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	4 cut(s)	19, 49, 363, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 437
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	117, 437
BseMI	GCAATG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	204
BseXI	GCAGC	3 cut(s)	95, 377, 422
BshFI	GGCC	2 cut(s)	110, 288
BshTI	ACCGGT	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	118, 431
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	117, 437
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	110, 288
Bsp1286I	GDGCHC	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	160
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	3 cut(s)	30, 413, 438
BspANI	GGCC	2 cut(s)	110, 288
BspLI	GGNNCC	5 cut(s)	74, 109, 168, 200, 223
BsrBI	CCGCTC	2 cut(s)	30, 438
BsrDI	GCAATG	1 cut(s)	111
BsrFI	RCCGGY	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	1 cut(s)	160
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	23, 453
BstDSI	CCRYGG	1 cut(s)	225
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	95, 377, 422
BstV2I	GAAGAC	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	110, 288
BtgI	CCRYGG	1 cut(s)	225
BtgZI	GCGATG	2 cut(s)	64, 117
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	374
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	3 cut(s)	108, 222, 287
CspAI	ACCGGT	1 cut(s)	430
CviAII	CATG	2 cut(s)	226, 235
DdeI	CTNAG	2 cut(s)	23, 453
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	2 cut(s)	229, 238
FaiI	YATR	5 cut(s)	227, 236, 278, 419, 447
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	225, 234
FauI	CCCGC	1 cut(s)	431
Fnu4HI	GCNGC	3 cut(s)	84, 391, 411
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	3 cut(s)	84, 391, 411
GluI	GCNGC	3 cut(s)	84, 391, 411
HaeIII	GGCC	2 cut(s)	110, 288
HapII	CCGG	2 cut(s)	118, 431
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	229, 238
HinfI	GANTC	2 cut(s)	192, 383
HpaII	CCGG	2 cut(s)	118, 431
HphI	GGTGA	1 cut(s)	445
Hpy188I	TCNGA	4 cut(s)	103, 191, 300, 323
Hpy188III	TCNNGA	2 cut(s)	64, 164
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	51, 327, 368, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	2 cut(s)	23, 453
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	229, 238
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	4 cut(s)	27, 166, 229, 371
LpnPI	CCDG	9 cut(s)	49, 131, 165, 183, 217, 318, 324, 354, 444
Lsp1109I	GCAGC	3 cut(s)	95, 377, 422
LweI	GCATC	3 cut(s)	69, 314, 341
MaeII	ACGT	1 cut(s)	42
MalI	GATC	1 cut(s)	162
MbiI	CCGCTC	2 cut(s)	30, 438
MboI	GATC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	234
MluCI	AATT	3 cut(s)	87, 126, 357
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	6 cut(s)	60, 102, 243, 266, 359, 435
MseI	TTAA	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	2 cut(s)	118, 431
MspR9I	CCNGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	118
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	2 cut(s)	229, 238
NlaIV	GGNNCC	5 cut(s)	74, 109, 168, 200, 223
PfeI	GAWTC	1 cut(s)	192
PinAI	ACCGGT	1 cut(s)	430
PkrI	GCNGC	3 cut(s)	85, 392, 412
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
Psp124BI	GAGCTC	1 cut(s)	234
PspN4I	GGNNCC	5 cut(s)	74, 109, 168, 200, 223
PspPI	GGNCC	3 cut(s)	108, 222, 287
PstNI	CAGNNNCTG	1 cut(s)	374
SacI	GAGCTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	353
SatI	GCNGC	3 cut(s)	84, 391, 411
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	3 cut(s)	108, 222, 287
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	234
SetI	ASST	9 cut(s)	45, 71, 234, 298, 351, 376, 392, 446, 454
SfaNI	GCATC	3 cut(s)	69, 314, 341
SinI	GGWCC	1 cut(s)	222
Sse9I	AATT	3 cut(s)	87, 126, 357
SsiI	CCGC	3 cut(s)	30, 413, 438
SstI	GAGCTC	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	381
TasI	AATT	3 cut(s)	87, 126, 357
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	353
Tru9I	TTAA	1 cut(s)	353
TseI	GCWGC	3 cut(s)	83, 390, 410
TspDTI	ATGAA	1 cut(s)	120
TspGWI	ACGGA	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	222
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.