RLG00000015488

Ribosomal L32p protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004051
Physical Location & Seq
Reverse (-)
66685880 .. 66687158
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015488

Sequence Viewer

Length: 399 bp
ATGGCTTTGCGCCTAGGAATGCTCAGGTCCGGCAGAGACCACTTGGCCTCCATTTTCGGCTTTCGGAGGTCGACCCACATCGCCGCCATGCCTCCGCCGTCGTTGTTTGGGTCTGTTCAGAACCGAATCGCTTCCCCACATTTTGTTCTGCCGAAATTCGATCGGGAGGCAGACACCGGTTTCGGGTTCCCAAGTATCTCCTTCGGTGGTTCCATGGAGCTCATGGCTGTCCCCAAGAGGAAGACTTCTCCCCACAAGAGAGGCATAAGGAATGGCCCAAAGGCTTTGAAACCTGTTCGGGTTATAATCCGATGCAAGAGTTGTGGTCGAGTCAAGCTGCCACACTATTATTGTTGCAGTGGACATAGGGGAAATGACAGTAATGGCTCAATTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L32p

Protein Analysis

133

Amino Acids

14.49

Weight (kDa)

11.14

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L32p PF01783 76 - 123 5e-11 Ribosomal L32p protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
AccI GTMKAC 1 cut(s) 71
AciI CCGC 2 cut(s) 84, 95
AcsI RAATTY 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 183
AgeI ACCGGT 1 cut(s) 176
AgsI TTSAA 1 cut(s) 289
AluBI AGCT 2 cut(s) 220, 337
AluI AGCT 2 cut(s) 220, 337
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 30
AoxI GGCC 2 cut(s) 45, 274
ApeKI GCWGC 1 cut(s) 337
ApoI RAATTY 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AsiGI ACCGGT 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 130
AspA2I CCTAGG 1 cut(s) 13
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 27, 275
AvaII GGWCC 1 cut(s) 27
AvrII CCTAGG 1 cut(s) 13
BanII GRGCYC 1 cut(s) 222
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 324
BceAI ACGGC 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 30
BfaI CTAG 1 cut(s) 14
BisI GCNGC 2 cut(s) 84, 338
BlnI CCTAGG 1 cut(s) 13
BlsI GCNGC 2 cut(s) 85, 339
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 27, 275
BmiI GGNNCC 2 cut(s) 188, 211
BmsI GCATC 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 248
Bpu10I CCTNAGC 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 13, 213
BsaWI WCCGGW 1 cut(s) 176
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse118I RCCGGY 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 13, 213
BseLI CCNNNNNNNGG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 37
BseXI GCAGC 1 cut(s) 324
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 47, 276
BshTI ACCGGT 1 cut(s) 176
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 2 cut(s) 30, 177
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 2 cut(s) 47, 276
Bso31I GGTCTC 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 2 cut(s) 84, 95
BspANI GGCC 2 cut(s) 47, 276
BspCNI CTCAG 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 188, 211
BspTNI GGTCTC 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 13, 213
BssMI GATC 1 cut(s) 160
BssT1I CCWWGG 2 cut(s) 13, 213
Bst4CI ACNGT 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 213
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 1 cut(s) 160
BstMCI CGRYCG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 248
BsuRI GGCC 2 cut(s) 47, 276
BtgI CCRYGG 1 cut(s) 213
BtgZI GCGATG 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
CfoI GCGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 27, 275
CspAI ACCGGT 1 cut(s) 176
CspCI CAANNNNNGTGG 2 cut(s) 304, 339
CviAII CATG 3 cut(s) 88, 214, 223
CviJI RGCY 9 cut(s) 5, 47, 60, 220, 227, 276, 284, 337, 387
CviKI_1 RGCY 9 cut(s) 5, 47, 60, 220, 227, 276, 284, 337, 387
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
EciI GGCGGA 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 2 cut(s) 13, 213
Eco24I GRGCYC 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 220
EcoT14I CCWWGG 2 cut(s) 13, 213
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 2 cut(s) 13, 213
FaeI CATG 3 cut(s) 91, 217, 226
FaiI YATR 6 cut(s) 89, 215, 224, 266, 305, 366
FaqI GGGAC 1 cut(s) 215
FatI CATG 3 cut(s) 87, 213, 222
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 84, 338
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 2 cut(s) 84, 338
FspBI CTAG 1 cut(s) 14
GlaI GCGC 1 cut(s) 11
GluI GCNGC 2 cut(s) 84, 338
HaeIII GGCC 2 cut(s) 47, 276
HapII CCGG 2 cut(s) 30, 177
HhaI GCGC 1 cut(s) 12
Hin1II CATG 3 cut(s) 91, 217, 226
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 72
HindII GTYRAC 1 cut(s) 72
HinfI GANTC 2 cut(s) 126, 330
HpaII CCGG 2 cut(s) 30, 177
Hpy166II GTNNAC 2 cut(s) 72, 362
Hpy188I TCNGA 3 cut(s) 66, 120, 311
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 72, 362
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 2 cut(s) 315, 357
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 3 cut(s) 91, 217, 226
HspAI GCGC 1 cut(s) 10
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 4 cut(s) 10, 43, 190, 306
Lsp1109I GCAGC 1 cut(s) 324
LweI GCATC 1 cut(s) 302
MaeI CTAG 1 cut(s) 14
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 155, 390
MlyI GAGTC 1 cut(s) 339
MnlI CCTC 6 cut(s) 58, 60, 102, 160, 231, 254
MroXI GAANNNNTTC 1 cut(s) 130
MspI CCGG 2 cut(s) 30, 177
Mva1269I GAATGC 1 cut(s) 24
NcoI CCATGG 1 cut(s) 213
NdeII GATC 1 cut(s) 160
NlaIII CATG 3 cut(s) 91, 217, 226
NlaIV GGNNCC 2 cut(s) 188, 211
PctI GAATGC 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 126
PinAI ACCGGT 1 cut(s) 176
PkrI GCNGC 2 cut(s) 85, 339
Ple19I CGATCG 1 cut(s) 163
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PsiI TTATAA 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 188, 211
PspPI GGNCC 2 cut(s) 27, 275
PvuI CGATCG 1 cut(s) 163
SacI GAGCTC 1 cut(s) 222
SalI GTCGAC 1 cut(s) 70
SatI GCNGC 2 cut(s) 84, 338
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 2 cut(s) 27, 275
SchI GAGTC 1 cut(s) 339
SduI GDGCHC 1 cut(s) 222
SetI ASST 5 cut(s) 29, 71, 222, 295, 339
SfaNI GCATC 1 cut(s) 302
SinI GGWCC 1 cut(s) 27
Sse9I AATT 2 cut(s) 155, 390
SsiI CCGC 2 cut(s) 84, 95
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 222
StyI CCWWGG 2 cut(s) 13, 213
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 3 cut(s) 71, 159, 328
TasI AATT 2 cut(s) 155, 390
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 126
TscAI CASTG 1 cut(s) 364
TseI GCWGC 1 cut(s) 337
TspRI CASTG 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 27
XapI RAATTY 1 cut(s) 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmaJI CCTAGG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 130
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.