Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004051

Physical Location & Seq

Genomic Coordinates Reverse (-)

513941 .. 516094

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG003200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCTTTGCGCATGGGAATGCTCAGGTCCGGCACAGACCACTTGGCCTCCATTTTCGGCTTTCGGAGGTGGACCCACATCGCCGCCATGCCTCCGCCGTTGTTTGGGTCTGTTCAGAACCGAATCGCTTCCCCACATTTTGCTCTGCCGGAATTCGATCGGGAGGCAGACACCGGTTTCGGGTTCCCAAGTATCTCCTTCGGTGGTTCCATGGAGCTCATGGCTGTCCCCAAGAGGAAGACTTCTCCCCACAAGAGAGGCATAAGGAATGGCCCAAAGGCTTTGAAACCTGTTCGGGTTATAATCCGATGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32p

Protein Analysis

105

Amino Acids

11.66

Weight (kDa)

11.6

Isoelectric Point (pI)

62.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26740 AT1G69485
fragaria_vesca	FvH4_4g13880 FvH4_4g13880
malus_domestica	MD04G1010200.v1.1
prunus_persica	Prupe.1G009500_v2.0.a1
pyrus_communis	pycom04g00830 pycom420g01310
rosa_chinensis	RchiOBHm_Chr4g0414951 RchiOBHm_Chr4g0415001 RchiOBHm_Chr6g0251041
rosa_laevigata	RLG00000008107 RLG00000015488
rosa_multiflora	Rmu_sc0001017.1_g000010
rosa_roxburghii	Rroxscaffold_5G00358730 Rroxscaffold_7G00217100
rosa_rugosa	Rorug02G0049300 Rorug04G0131100 Rorug04G0131200 Rorug04G0131300 Rorug04G0131300 Rorug05G0499800
rosa_samantha	Rh4AG190600 Rh4BG188600 Rh4CG201800 Rh4DG189200 Rh6AG007900 Rh6BG003200 Rh6CG005300 Rh6DG005600
rosa_wichuraiana	Rw4G016190 Rw4G016230 Rw6G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
Acc16I	TGCGCA	1 cut(s)	11
AciI	CCGC	2 cut(s)	84, 95
AcsI	RAATTY	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	104, 180
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
Alw21I	GWGCWC	1 cut(s)	219
AoxI	GGCC	2 cut(s)	45, 271
ApoI	RAATTY	1 cut(s)	152
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AsiGI	ACCGGT	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	3 cut(s)	27, 72, 272
AvaII	GGWCC	2 cut(s)	27, 72
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	219
BceAI	ACGGC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme18I	GGWCC	2 cut(s)	27, 72
BmgT120I	GGNCC	3 cut(s)	27, 72, 272
BmiI	GGNNCC	3 cut(s)	74, 185, 208
BmsI	GCATC	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	245
Bpu10I	CCTNAGC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 180
Bse118I	RCCGGY	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	104, 180
BseMII	CTCAG	1 cut(s)	37
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	47, 273
BshTI	ACCGGT	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	30, 149, 174
BslFI	GGGAC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	104, 180
BsmFI	GGGAC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	47, 273
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	157
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	2 cut(s)	84, 95
BspANI	GGCC	2 cut(s)	47, 273
BspCNI	CTCAG	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	74, 185, 208
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	23
BstDSI	CCRYGG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	1 cut(s)	160
BstMBI	GATC	1 cut(s)	157
BstMCI	CGRYCG	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	47, 273
BtgI	CCRYGG	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	64
CfoI	GCGC	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	3 cut(s)	27, 72, 272
CspAI	ACCGGT	1 cut(s)	173
CviAII	CATG	4 cut(s)	13, 88, 211, 220
CviJI	RGCY	7 cut(s)	5, 47, 60, 217, 224, 273, 281
CviKI_1	RGCY	7 cut(s)	5, 47, 60, 217, 224, 273, 281
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	27, 72
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	152
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	4 cut(s)	16, 91, 214, 223
FaiI	YATR	6 cut(s)	14, 89, 212, 221, 263, 302
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	4 cut(s)	12, 87, 210, 219
Fnu4HI	GCNGC	1 cut(s)	84
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	84
FspI	TGCGCA	1 cut(s)	11
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	2 cut(s)	47, 273
HapII	CCGG	3 cut(s)	30, 149, 174
HhaI	GCGC	1 cut(s)	12
Hin1II	CATG	4 cut(s)	16, 91, 214, 223
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	3 cut(s)	30, 149, 174
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	3 cut(s)	66, 117, 308
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	72
HpyAV	CCTTC	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	312
HpyF3I	CTNAG	1 cut(s)	23
Hsp92II	CATG	4 cut(s)	16, 91, 214, 223
HspAI	GCGC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	157
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	5 cut(s)	10, 43, 162, 187, 303
LweI	GCATC	1 cut(s)	299
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	1 cut(s)	152
MnlI	CCTC	6 cut(s)	58, 60, 102, 157, 228, 251
MroXI	GAANNNNTTC	1 cut(s)	127
MslI	CAYNNNNRTG	1 cut(s)	17
MspI	CCGG	3 cut(s)	30, 149, 174
Mva1269I	GAATGC	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	210
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	4 cut(s)	16, 91, 214, 223
NlaIV	GGNNCC	3 cut(s)	74, 185, 208
NsbI	TGCGCA	1 cut(s)	11
PctI	GAATGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	123
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	85
Ple19I	CGATCG	1 cut(s)	160
PsiI	TTATAA	1 cut(s)	302
Psp124BI	GAGCTC	1 cut(s)	219
PspN4I	GGNNCC	3 cut(s)	74, 185, 208
PspPI	GGNCC	3 cut(s)	27, 72, 272
PvuI	CGATCG	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	219
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	3 cut(s)	27, 72, 272
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	4 cut(s)	29, 71, 219, 292
SfaNI	GCATC	1 cut(s)	299
SinI	GGWCC	2 cut(s)	27, 72
SmiMI	CAYNNNNRTG	1 cut(s)	17
Sse9I	AATT	1 cut(s)	152
SsiI	CCGC	2 cut(s)	84, 95
SstI	GAGCTC	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	210
TaqI	TCGA	1 cut(s)	156
TasI	AATT	1 cut(s)	152
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	27, 72
XapI	RAATTY	1 cut(s)	152
XcmI	CCANNNNNNNNNTGG	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.