Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004051

Physical Location & Seq

Genomic Coordinates Reverse (-)

17390182 .. 17392260

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13880.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCGTCGAAGATTTCAATTCTAAGGACCGGTACCGAGAACATAGCCTGCCTTTTCGGCCTGAGGAGGTGGACCCACATCGCAGCTATTCCTCCGTCGTCGGATGGGTCCCTTGCCAGGCCGATTTCACCGCCGCCGTTCGCTCTGCCGGAGAAGGATAACAGAGTCGGATTCGGGTTCCCCAGTTTCACATTCGGTGGGTCCATGGAGCTCATGGCTGTCCCCAAGAGGAAGACTACTCCCCACAAGAGAGGAATACGAAATGGCCCAAAAGCTCTGAAGCCTGTTCCTGTGATAATCCGATGCAGGAGTTGTGGTCGTGTCAAGCTGCCACATTATTATTGTTGCAGCGGACATAGGGGAAATACCGGTGAGCGAGAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L32p

Protein Analysis

129

Amino Acids

14.03

Weight (kDa)

10.53

Isoelectric Point (pI)

74.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26740 AT1G69485
fragaria_vesca	FvH4_4g13880 FvH4_4g13880
malus_domestica	MD04G1010200.v1.1
prunus_persica	Prupe.1G009500_v2.0.a1
pyrus_communis	pycom04g00830 pycom420g01310
rosa_chinensis	RchiOBHm_Chr4g0414951 RchiOBHm_Chr4g0415001 RchiOBHm_Chr6g0251041
rosa_laevigata	RLG00000008107 RLG00000015488
rosa_multiflora	Rmu_sc0001017.1_g000010
rosa_roxburghii	Rroxscaffold_5G00358730 Rroxscaffold_7G00217100
rosa_rugosa	Rorug02G0049300 Rorug04G0131100 Rorug04G0131200 Rorug04G0131300 Rorug04G0131300 Rorug05G0499800
rosa_samantha	Rh4AG190600 Rh4BG188600 Rh4CG201800 Rh4DG189200 Rh6AG007900 Rh6BG003200 Rh6CG005300 Rh6DG005600
rosa_wichuraiana	Rw4G016190 Rw4G016230 Rw6G000880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	3 cut(s)	131, 134, 351
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgeI	ACCGGT	2 cut(s)	29, 368
AgsI	TTSAA	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	4 cut(s)	86, 211, 275, 328
AluI	AGCT	4 cut(s)	86, 211, 275, 328
Alw21I	GWGCWC	1 cut(s)	213
AoxI	GGCC	3 cut(s)	58, 119, 265
ApeKI	GCWGC	3 cut(s)	83, 328, 348
AsiGI	ACCGGT	2 cut(s)	29, 368
Asp718I	GGTACC	1 cut(s)	32
AspS9I	GGNCC	5 cut(s)	27, 72, 108, 201, 266
AsuHPI	GGTGA	2 cut(s)	120, 383
AvaII	GGWCC	4 cut(s)	27, 72, 108, 201
AxyI	CCTNAGG	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	95, 315, 360
BccI	CCATC	1 cut(s)	98
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	1 cut(s)	118
BglI	GCCNNNNNGGC	1 cut(s)	57
BisI	GCNGC	4 cut(s)	84, 134, 329, 349
BlsI	GCNGC	4 cut(s)	85, 135, 330, 350
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	4 cut(s)	27, 72, 108, 201
BmgT120I	GGNCC	5 cut(s)	27, 72, 108, 201, 266
BmiI	GGNNCC	6 cut(s)	34, 74, 109, 110, 179, 202
BmrFI	CCNGG	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	2 cut(s)	29, 368
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	2 cut(s)	29, 368
Bse1I	ACTGG	1 cut(s)	183
Bse21I	CCTNAGG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	3 cut(s)	95, 315, 360
BshFI	GGCC	3 cut(s)	60, 121, 267
BshNI	GGYRCC	1 cut(s)	32
BshTI	ACCGGT	2 cut(s)	29, 368
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	3 cut(s)	30, 149, 369
BslFI	GGGAC	2 cut(s)	94, 206
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmFI	GGGAC	2 cut(s)	94, 206
BsnI	GGCC	3 cut(s)	60, 121, 267
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	3 cut(s)	131, 134, 351
BspANI	GGCC	3 cut(s)	60, 121, 267
BspCNI	CTCAG	1 cut(s)	54
BspLI	GGNNCC	6 cut(s)	34, 74, 109, 110, 179, 202
BspT107I	GGYRCC	1 cut(s)	32
BsrFI	RCCGGY	2 cut(s)	29, 368
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	2 cut(s)	29, 368
BssECI	CCNNGG	1 cut(s)	204
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	23, 62
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	109
BstMWI	GCNNNNNNNGC	1 cut(s)	57
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	3 cut(s)	95, 315, 360
BstV2I	GAAGAC	1 cut(s)	239
Bsu36I	CCTNAGG	1 cut(s)	62
BsuRI	GGCC	3 cut(s)	60, 121, 267
BtgI	CCRYGG	1 cut(s)	204
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	49
Cfr10I	RCCGGY	2 cut(s)	29, 368
Cfr13I	GGNCC	5 cut(s)	27, 72, 108, 201, 266
Csp6I	GTAC	1 cut(s)	33
CspAI	ACCGGT	2 cut(s)	29, 368
CviAII	CATG	2 cut(s)	205, 214
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	2 cut(s)	23, 62
Ecl136II	GAGCTC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	4 cut(s)	27, 72, 108, 201
Eco53kI	GAGCTC	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	299
Eco81I	CCTNAGG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	211
EcoO109I	RGGNCCY	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	208, 217
FaiI	YATR	5 cut(s)	44, 206, 215, 357, 385
FaqI	GGGAC	2 cut(s)	94, 206
FatI	CATG	2 cut(s)	204, 213
Fnu4HI	GCNGC	4 cut(s)	84, 134, 329, 349
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	4 cut(s)	84, 134, 329, 349
GluI	GCNGC	4 cut(s)	84, 134, 329, 349
HaeIII	GGCC	3 cut(s)	60, 121, 267
HapII	CCGG	3 cut(s)	30, 149, 369
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	208, 217
HinfI	GANTC	2 cut(s)	165, 171
HpaII	CCGG	3 cut(s)	30, 149, 369
HphI	GGTGA	2 cut(s)	120, 383
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	4 cut(s)	103, 170, 279, 302
Hpy8I	GTNNAC	1 cut(s)	72
Hpy99I	CGWCG	3 cut(s)	10, 100, 103
HpyAV	CCTTC	1 cut(s)	148
HpyCH4V	TGCA	2 cut(s)	306, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	57
HpyF3I	CTNAG	2 cut(s)	23, 62
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	208, 217
KflI	GGGWCCC	1 cut(s)	108
KpnI	GGTACC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	3 cut(s)	95, 315, 360
LweI	GCATC	1 cut(s)	293
MboII	GAAGA	2 cut(s)	22, 244
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	2 cut(s)	81, 148
MnlI	CCTC	6 cut(s)	57, 60, 102, 222, 245, 373
MspA1I	CMGCKG	1 cut(s)	351
MspI	CCGG	3 cut(s)	30, 149, 369
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	204
NlaIII	CATG	2 cut(s)	208, 217
NlaIV	GGNNCC	6 cut(s)	34, 74, 109, 110, 179, 202
PfeI	GAWTC	1 cut(s)	171
PinAI	ACCGGT	2 cut(s)	29, 368
PkrI	GCNGC	4 cut(s)	85, 135, 330, 350
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PpuMI	RGGWCCY	1 cut(s)	108
Psp124BI	GAGCTC	1 cut(s)	213
Psp5II	RGGWCCY	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	6 cut(s)	34, 74, 109, 110, 179, 202
PspPI	GGNCC	5 cut(s)	27, 72, 108, 201, 266
PspPPI	RGGWCCY	1 cut(s)	108
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SacI	GAGCTC	1 cut(s)	213
SatI	GCNGC	4 cut(s)	84, 134, 329, 349
Sau96I	GGNCC	5 cut(s)	27, 72, 108, 201, 266
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	71, 88, 213, 277, 330, 384
SfaNI	GCATC	1 cut(s)	293
SinI	GGWCC	4 cut(s)	27, 72, 108, 201
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	3 cut(s)	131, 134, 351
SstI	GAGCTC	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	204
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	18
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	1 cut(s)	171
TseI	GCWGC	3 cut(s)	83, 328, 348
TspGWI	ACGGA	1 cut(s)	84
VpaK11BI	GGWCC	4 cut(s)	27, 72, 108, 201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.