AT1G71850

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014511
Physical Location & Seq
Reverse (-)
27024731 .. 27026363
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71850.1

Sequence Viewer

Length: 1413 bp
ATGAAATCCATTTTCCGTTCCATTTCTATCCGCCGTCATTCCGGCCACCGAACCTTCGCCGATACGTCGGCGGTGGAAGATACCTACAAATTCGTAAGAGACAGAGGACTCGACCACGCGGTAGAAAGAGAGAAGAATCTCAGACCACTTCTCAGTATCAAAGACCTAATCAGATCGGAGCCAGCAAAATCAGTTCCGATCTCAGTTATCACCTCACAGAAAGATTCACTACGAGTTCCTCTTCGTCCAATCGAGTTCATACGTAGCTTCCCTTCCGTTTTCCAAGAGTTTCTCCCCGGAGGAATTGGTATTCATCCTCACATCAGCCTCACGCCGGAGATTCTAAACCACGATGCCGATGAGCAATTGGTTTACGGTAGTGAGACTTATAAGCAAGGATTAGCTGATAGGCTTTTGAAATTGCTGATGATTAATAGGATTAACAAAATTCCATTAGAGATTCTAGATTTGTTGAAATGGGATTTAGGTTTACCTAAGGATTATGTTGAAACTATGGTACCTGAGTTTCCTGATTACTTTAGAGTTATCAAATCGAAGTTAAGAGGATGTAGTGGTGAGCTAGAGCTGGTTTGTTGGAGCAATGAGCATGCTGTATCTGTGTTGGAGAAGAAAGCTAGAACATTACGTAAAGGAGAGTATACGAAAGGATCGGCGATTGCTTTTCCGATGAAGTTTTCGAATGGTTTTGTGGTTGATAAGAAGATGAAGAAATGGATTGATGATTGGCAGAAGTTGCCGTATATTTCTCCTTATGAGAATGCACTTCATCTGTCTGCGACTAGCGATGAGTCTGATAAGTGGGCGGCGGCTGTTTTGCACGAGATCATGAACCTTTTTGTGTCGAAGAAGGTTGAGAAAGATGCTATTTTGCATCTTGGTGAGTTTATGGGATTGAGATCGAGGTTTAAGAGAGTTCTCCATAATCATCCTGGTATCTTTTACTTGTCTAGTAAGCTTAGGACTCACACTGTGGTTCTTAGAGATGGTTACAAGAGGGGGATGTTGATAGAGAGTAATGAATTGGTGACAAGCAGGAACCGTTACATGAAACTCATGAATACAGTTAAGAAAGATAACAAGGCAGTTTCTTCGAGCAGCAAGAAAGAAGATAAGGGGAAAGTGGAAGGGGAAGTTTGTGATACTGATGCGAAGGCTGAGAATGATGACATTTCTGGTTCTGATGTCGAGGATGATCGTCAAGGAGACTTTGTTGATGATGACGAGGACGATGATGAAGTGGATCAAAACCAGGATCTGGAGCGTGGTCGTAGAAATTCAAGTCCAAGATCTGGTAGGAGGAGTTTTGGAAACTCAGGTTCAAGAGATAAGGCACAATCGAGGCGGAGCAAGATCAGTTTAAAGACTGAGAAGAAGAGGAGTCGGATGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

470

Amino Acids

53.88

Weight (kDa)

9.17

Isoelectric Point (pI)

47.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 32 - 363 8.3e-111 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014511)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71850
fragaria_vesca FvH4_4g08630 FvH4_4g08630
malus_domestica MD10G1045200.v1.1
prunus_persica Prupe.8G052100_v2.0.a1
pyrus_communis pycom10g03160
rosa_chinensis RchiOBHm_Chr4g0405141
rosa_laevigata RLG00000008869
rosa_multiflora Rmu_co8338777.1_g000001 Rmu_ssc0000255.1_g000039
rosa_roxburghii Rroxscaffold_5G00349370
rosa_rugosa Rorug04G0054000 Rorug04G0054100
rosa_samantha Rh4BG122500 Rh4CG136300 Rh4DG122700
rosa_wichuraiana Rw4G010430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
Acc65I GGTACC 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 517
AccB7I CCANNNNNTGG 2 cut(s) 1276, 1310
AccI GTMKAC 1 cut(s) 659
AccII CGCG 1 cut(s) 119
AciI CCGC 6 cut(s) 31, 71, 119, 824, 827, 1363
AclWI GGATC 3 cut(s) 676, 1269, 1281
AcoI YGGCCR 1 cut(s) 43
AcsI RAATTY 3 cut(s) 89, 447, 1294
AdeI CACNNNGTG 1 cut(s) 991
AfaI GTAC 1 cut(s) 519
AfiI CCNNNNNNNGG 3 cut(s) 334, 1276, 1310
AgsI TTSAA 5 cut(s) 418, 475, 509, 1299, 1341
AjnI CCWGG 2 cut(s) 949, 1269
AluBI AGCT 6 cut(s) 267, 404, 580, 586, 635, 976
AluI AGCT 6 cut(s) 267, 404, 580, 586, 635, 976
Alw26I GTCTC 3 cut(s) 93, 377, 1218
AlwI GGATC 3 cut(s) 676, 1269, 1281
AlwNI CAGNNNCTG 1 cut(s) 1276
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 1116
ApoI RAATTY 3 cut(s) 89, 447, 1294
AseI ATTAAT 1 cut(s) 432
Asp718I GGTACC 1 cut(s) 517
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 4 cut(s) 202, 587, 911, 1057
AsuII TTCGAA 1 cut(s) 698
AxyI CCTNAGG 1 cut(s) 495
BaeI ACNNNNGTAYC 4 cut(s) 501, 509, 534, 542
BanI GGYRCC 1 cut(s) 517
BarI GAAGNNNNNNTAC 2 cut(s) 256, 288
BauI CACGAG 1 cut(s) 839
BbvI GCAGC 1 cut(s) 1128
BccI CCATC 1 cut(s) 998
BceAI ACGGC 2 cut(s) 18, 742
BcgI CGANNNNNNTGC 2 cut(s) 1092, 1126
BciT130I CCWGG 2 cut(s) 951, 1271
BcnI CCSGG 1 cut(s) 297
BcoDI GTCTC 3 cut(s) 93, 377, 1218
BfaI CTAG 5 cut(s) 464, 581, 636, 801, 969
BglII AGATCT 1 cut(s) 1307
BisI GCNGC 3 cut(s) 825, 828, 1117
BlsI GCNGC 3 cut(s) 826, 829, 1118
Bme1390I CCNGG 3 cut(s) 297, 951, 1271
BmiI GGNNCC 3 cut(s) 180, 519, 1058
BmrFI CCNGG 3 cut(s) 297, 951, 1271
BmsI GCATC 4 cut(s) 343, 871, 901, 1156
BpmI CTGGAG 1 cut(s) 1298
Bpu10I CCTNAGC 1 cut(s) 977
Bpu14I TTCGAA 1 cut(s) 698
BpuMI CCSGG 1 cut(s) 297
BsaAI YACGTR 2 cut(s) 263, 647
BsaBI GATNNNNATC 1 cut(s) 916
BsaJI CCNNGG 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 1215, 1245
Bsc4I CCNNNNNNNGG 3 cut(s) 334, 1276, 1310
Bse21I CCTNAGG 1 cut(s) 495
Bse3DI GCAATG 1 cut(s) 607
Bse8I GATNNNNATC 1 cut(s) 916
BseBI CCWGG 2 cut(s) 951, 1271
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 6 cut(s) 313, 572, 946, 1026, 1216, 1410
BseJI GATNNNNATC 1 cut(s) 916
BseLI CCNNNNNNNGG 3 cut(s) 334, 1276, 1310
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 7 cut(s) 154, 166, 216, 513, 1167, 1347, 1377
BseRI GAGGAG 2 cut(s) 1333, 1411
BseXI GCAGC 1 cut(s) 1128
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 45
BshNI GGYRCC 1 cut(s) 517
BsiSI CCGG 3 cut(s) 42, 297, 335
BslI CCNNNNNNNGG 3 cut(s) 334, 1276, 1310
BsmAI GTCTC 3 cut(s) 93, 377, 1218
BsmI GAATGC 1 cut(s) 784
BsnI GGCC 1 cut(s) 45
Bsp119I TTCGAA 1 cut(s) 698
BspACI CCGC 6 cut(s) 31, 71, 119, 824, 827, 1363
BspANI GGCC 1 cut(s) 45
BspCNI CTCAG 7 cut(s) 153, 165, 215, 514, 1168, 1346, 1378
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 2 cut(s) 846, 1074
BspLI GGNNCC 3 cut(s) 180, 519, 1058
BspPI GGATC 3 cut(s) 676, 1269, 1281
BspT104I TTCGAA 1 cut(s) 698
BspT107I GGYRCC 1 cut(s) 517
BsrDI GCAATG 1 cut(s) 607
BssECI CCNNGG 1 cut(s) 295
BssNAI GTATAC 1 cut(s) 660
BssSI CACGAG 1 cut(s) 839
Bst1107I GTATAC 1 cut(s) 660
Bst2BI CACGAG 1 cut(s) 839
Bst2UI CCWGG 2 cut(s) 951, 1271
Bst4CI ACNGT 4 cut(s) 377, 991, 1061, 1084
Bst6I CTCTTC 2 cut(s) 246, 1388
BstAPI GCANNNNNTGC 1 cut(s) 754
BstBAI YACGTR 2 cut(s) 263, 647
BstBI TTCGAA 1 cut(s) 698
BstC8I GCNNGC 2 cut(s) 183, 609
BstF5I GGATG 6 cut(s) 313, 572, 946, 1026, 1216, 1410
BstFNI CGCG 1 cut(s) 119
BstMAI GTCTC 3 cut(s) 93, 377, 1218
BstMWI GCNNNNNNNGC 1 cut(s) 754
BstNI CCWGG 2 cut(s) 951, 1271
BstNSI RCATGY 1 cut(s) 611
BstSCI CCNGG 3 cut(s) 295, 949, 1269
BstSNI TACGTA 2 cut(s) 263, 647
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 1128
BstX2I RGATCY 2 cut(s) 1273, 1307
BstYI RGATCY 2 cut(s) 1273, 1307
BstZ17I GTATAC 1 cut(s) 660
Bsu36I CCTNAGG 1 cut(s) 495
BsuRI GGCC 1 cut(s) 45
BtgZI GCGATG 1 cut(s) 819
BtsCI GGATG 6 cut(s) 313, 572, 946, 1026, 1216, 1410
BtsIMutI CAGTG 1 cut(s) 987
Cac8I GCNNGC 2 cut(s) 183, 609
CaiI CAGNNNCTG 1 cut(s) 1276
CciI TCATGA 2 cut(s) 846, 1074
Csp6I GTAC 1 cut(s) 518
CviAII CATG 4 cut(s) 608, 847, 1066, 1075
CviQI GTAC 1 cut(s) 518
DraI TTTAAA 1 cut(s) 1380
DraIII CACNNNGTG 1 cut(s) 991
EaeI YGGCCR 1 cut(s) 43
Eam1104I CTCTTC 2 cut(s) 246, 1388
EarI CTCTTC 2 cut(s) 246, 1388
EciI GGCGGA 2 cut(s) 20, 1378
Eco105I TACGTA 2 cut(s) 263, 647
Eco81I CCTNAGG 1 cut(s) 495
EcoRII CCWGG 2 cut(s) 949, 1269
FaeI CATG 4 cut(s) 611, 850, 1069, 1078
FatI CATG 4 cut(s) 607, 846, 1065, 1074
FblI GTMKAC 1 cut(s) 659
Fnu4HI GCNGC 3 cut(s) 825, 828, 1117
FokI GGATG 5 cut(s) 300, 579, 933, 1033, 1223
Fsp4HI GCNGC 3 cut(s) 825, 828, 1117
FspBI CTAG 5 cut(s) 464, 581, 636, 801, 969
GluI GCNGC 3 cut(s) 825, 828, 1117
GsuI CTGGAG 1 cut(s) 1298
HaeIII GGCC 1 cut(s) 45
HapII CCGG 3 cut(s) 42, 297, 335
Hin1II CATG 4 cut(s) 611, 850, 1069, 1078
HindIII AAGCTT 1 cut(s) 974
HinfI GANTC 8 cut(s) 108, 136, 224, 340, 460, 809, 982, 1399
HpaII CCGG 3 cut(s) 42, 297, 335
HphI GGTGA 4 cut(s) 202, 587, 911, 1057
Hpy166II GTNNAC 3 cut(s) 373, 491, 660
Hpy188I TCNGA 8 cut(s) 143, 173, 178, 198, 687, 814, 1201, 1404
Hpy188III TCNNGA 6 cut(s) 464, 530, 847, 1075, 1277, 1341
Hpy8I GTNNAC 3 cut(s) 373, 491, 660
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 5 cut(s) 64, 282, 862, 1139, 1165
HpyCH4III ACNGT 4 cut(s) 377, 991, 1061, 1084
HpyCH4IV ACGT 3 cut(s) 65, 262, 646
HpyCH4V TGCA 3 cut(s) 782, 838, 892
HpyF10VI GCNNNNNNNGC 1 cut(s) 754
HpySE526I ACGT 3 cut(s) 65, 262, 646
Hsp92II CATG 4 cut(s) 611, 850, 1069, 1078
KpnI GGTACC 1 cut(s) 521
LmnI GCTCC 4 cut(s) 178, 597, 1279, 1365
Lsp1109I GCAGC 1 cut(s) 1128
LweI GCATC 4 cut(s) 343, 871, 901, 1156
MaeI CTAG 5 cut(s) 464, 581, 636, 801, 969
MaeII ACGT 3 cut(s) 65, 262, 646
MaeIII GTNAC 3 cut(s) 1007, 1045, 1061
MfeI CAATTG 1 cut(s) 365
MflI RGATCY 2 cut(s) 1273, 1307
MluCI AATT 7 cut(s) 89, 303, 365, 419, 447, 1040, 1294
MlyI GAGTC 4 cut(s) 102, 818, 976, 1408
MmeI TCCRAC 3 cut(s) 575, 603, 1382
MseI TTAA 6 cut(s) 432, 441, 560, 927, 1086, 1379
MslI CAYNNNNRTG 1 cut(s) 897
MspI CCGG 3 cut(s) 42, 297, 335
MspR9I CCNGG 3 cut(s) 297, 951, 1271
MunI CAATTG 1 cut(s) 365
Mva1269I GAATGC 1 cut(s) 784
MvaI CCWGG 2 cut(s) 951, 1271
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 754
NciI CCSGG 1 cut(s) 297
NlaIII CATG 4 cut(s) 611, 850, 1069, 1078
NlaIV GGNNCC 3 cut(s) 180, 519, 1058
NmuCI GTSAC 1 cut(s) 1045
NspI RCATGY 1 cut(s) 611
NspV TTCGAA 1 cut(s) 698
PaeI GCATGC 1 cut(s) 611
PagI TCATGA 2 cut(s) 846, 1074
PctI GAATGC 1 cut(s) 784
PfeI GAWTC 4 cut(s) 136, 224, 340, 460
PflMI CCANNNNNTGG 2 cut(s) 1276, 1310
PkrI GCNGC 3 cut(s) 826, 829, 1118
PleI GAGTC 4 cut(s) 102, 817, 976, 1407
PpsI GAGTC 4 cut(s) 102, 817, 976, 1407
Ppu21I YACGTR 2 cut(s) 263, 647
PshBI ATTAAT 1 cut(s) 432
PsiI TTATAA 1 cut(s) 390
Psp6I CCWGG 2 cut(s) 949, 1269
PspGI CCWGG 2 cut(s) 949, 1269
PspN4I GGNNCC 3 cut(s) 180, 519, 1058
PstNI CAGNNNCTG 1 cut(s) 1276
PsuI RGATCY 2 cut(s) 1273, 1307
RsaI GTAC 1 cut(s) 519
RsaNI GTAC 1 cut(s) 518
RseI CAYNNNNRTG 1 cut(s) 897
SaqAI TTAA 6 cut(s) 432, 441, 560, 927, 1086, 1379
SatI GCNGC 3 cut(s) 825, 828, 1117
SchI GAGTC 4 cut(s) 102, 818, 976, 1408
ScrFI CCNGG 3 cut(s) 297, 951, 1271
SfaNI GCATC 4 cut(s) 343, 871, 901, 1156
SfuI TTCGAA 1 cut(s) 698
SmiMI CAYNNNNRTG 1 cut(s) 897
SnaBI TACGTA 2 cut(s) 263, 647
SphI GCATGC 1 cut(s) 611
Sse9I AATT 7 cut(s) 89, 303, 365, 419, 447, 1040, 1294
SsiI CCGC 6 cut(s) 31, 71, 119, 824, 827, 1363
SspMI CTAG 5 cut(s) 464, 581, 636, 801, 969
StyD4I CCNGG 3 cut(s) 295, 949, 1269
TaaI ACNGT 4 cut(s) 377, 991, 1061, 1084
TaiI ACGT 3 cut(s) 68, 265, 649
TaqI TCGA 9 cut(s) 111, 252, 554, 698, 863, 920, 1112, 1206, 1358
TasI AATT 7 cut(s) 89, 303, 365, 419, 447, 1040, 1294
TauI GCSGC 2 cut(s) 827, 830
TfiI GAWTC 4 cut(s) 136, 224, 340, 460
Tru1I TTAA 6 cut(s) 432, 441, 560, 927, 1086, 1379
Tru9I TTAA 6 cut(s) 432, 441, 560, 927, 1086, 1379
TscAI CASTG 1 cut(s) 994
TseFI GTSAC 1 cut(s) 1045
TseI GCWGC 1 cut(s) 1116
Tsp45I GTSAC 1 cut(s) 1045
TspGWI ACGGA 2 cut(s) 5, 265
TspRI CASTG 1 cut(s) 994
Van91I CCANNNNNTGG 2 cut(s) 1276, 1310
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 3 cut(s) 89, 447, 1294
XbaI TCTAGA 1 cut(s) 463
XceI RCATGY 1 cut(s) 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XmiI GTMKAC 1 cut(s) 659
XspI CTAG 5 cut(s) 464, 581, 636, 801, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.