Rmu_ssc0000255.1_g000039

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000255.1
OG0014511
Physical Location & Seq
Forward (+)
247944 .. 249557
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000255.1_g000039.1.cds

Sequence Viewer

Length: 1614 bp
atgtctccgtttcacttcaccttccgctccgtcctaaacccccaccaccaccaccaccaccaccgccacgtcagccgcagaaccttcgtggacaccaccataaactgggtccgcgaccgcggcctcgaccacgtggtcgagcgggagagaaacctccggccaatcatcaacatcaagaacctcatcaaatcagagccctccaaatccctccccatttccctcctcaccaaatcccgccactccctcatgatccccacgcgccccgtcgagtttgtccgccaatacccctccattttcgaggagttcctccccgccggcatcgccgccgtccagccccacgtccgcctcaccccgcaagtcctcgacatcgacgccaacgagcagttgatgtatcagagcgtgacctacacgcaccaagccgccgatcgcctcttcaagctgctaatgctggtgagaagcaataaactgccgctgaatgtcattgagcttttcaaatgggatttggggcttcctcaagattacgtggacaccattgtgccggagtttccggattactttaagattgtagtggggaaatatgggcagccggagttggagatggtgtgttggagtgatgagctggccacttcggttatggagaagcaagcaaaacagggctatgtcaagggaatgccgcttgcttttcctatgcggttttcgagaggtttcgagatggataagaagctgaagaagtggattgatgagtggcagaagttgccgtatgtgtctccttatgagaatgcagctcatctgtcgtctcagagtgacgagtcggataagtgggctgtcgcggttttgcatgagcttctgcatattttggttccgaagaagacagacagggagaatgttttggctctgggagagtatttggggattagatcgaggtttaagcgggcattgcttcaccatcctggaatactgtatgtgtcgagcaagattaggacttatacagttgtgttgagagaagggtataagaggggtgccattatcgaaaatcatccgctgatggacataagaaaccagtatattcacctcatgaatgctgtgaaggaagatggtaaaacgataagttccaaggagaaaaagaagaagaagggaattgaagattctaaaggagaggatgtagaagaggaagacgatgacaatgaggaagagctggaaggggagttgtgtgattcgtctgatgctgaagtggagcatgacaatgttgacagtgaagacgatgaagaagaagatgaagacgatgatgaagaagagggtgtgacaagcattcgaatggatgatgctaatactagaggaagaagagctaggaaatctaattttgatgtcatgacgccttccagaaatgctggaagaggaagttcaggtcaaagaagagcttggaaatctgataatactgagagaaggaggtccggtggacaataccctcgtaggagcggggatgaagtctcagcagaaacttctagaagaacacaagctgatgttaggcataatgtccaccaaaattcaagagaaagatcaaatcgctccagaagcagggggagttattcaccagacaagaagaattatgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

537

Amino Acids

62.28

Weight (kDa)

6.56

Isoelectric Point (pI)

54.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014511)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71850
fragaria_vesca FvH4_4g08630 FvH4_4g08630
malus_domestica MD10G1045200.v1.1
prunus_persica Prupe.8G052100_v2.0.a1
pyrus_communis pycom10g03160
rosa_chinensis RchiOBHm_Chr4g0405141
rosa_laevigata RLG00000008869
rosa_multiflora Rmu_co8338777.1_g000001 Rmu_ssc0000255.1_g000039
rosa_roxburghii Rroxscaffold_5G00349370
rosa_rugosa Rorug04G0054000 Rorug04G0054100
rosa_samantha Rh4BG122500 Rh4CG136300 Rh4DG122700
rosa_wichuraiana Rw4G010430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 1019
AccB7I CCANNNNNTGG 1 cut(s) 105
AccBSI CCGCTC 3 cut(s) 27, 142, 1476
AccII CGCG 4 cut(s) 114, 120, 259, 830
AccIII TCCGGA 1 cut(s) 547
AclWI GGATC 1 cut(s) 244
AcoI YGGCCR 2 cut(s) 158, 621
AcsI RAATTY 1 cut(s) 1543
AcuI CTGAAG 2 cut(s) 746, 1248
AcvI CACGTG 1 cut(s) 133
AcyI GRCGYC 2 cut(s) 372, 1373
AfiI CCNNNNNNNGG 2 cut(s) 105, 1575
AgsI TTSAA 4 cut(s) 436, 493, 1142, 1548
AjiI CACGTC 2 cut(s) 70, 340
AjnI CCWGG 1 cut(s) 949
AleI CACNNNNGTG 1 cut(s) 533
Alw26I GTCTC 4 cut(s) 9, 771, 801, 1492
AlwI GGATC 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 547
AoxI GGCC 3 cut(s) 121, 158, 621
ApeKI GCWGC 3 cut(s) 439, 583, 782
ApoI RAATTY 1 cut(s) 1543
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 109, 1449
AsuHPI GGTGA 7 cut(s) 10, 217, 340, 463, 935, 1061, 1581
AsuII TTCGAA 1 cut(s) 1312
AvaII GGWCC 2 cut(s) 109, 1449
BalI TGGCCA 1 cut(s) 623
BanI GGYRCC 1 cut(s) 1019
BanII GRGCYC 1 cut(s) 198
BbrPI CACGTG 1 cut(s) 133
BbsI GAAGAC 4 cut(s) 875, 1179, 1263, 1284
BbvI GCAGC 3 cut(s) 426, 595, 794
BccI CCATC 5 cut(s) 592, 706, 954, 1039, 1088
BceAI ACGGC 2 cut(s) 311, 742
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 1 cut(s) 951
BcoDI GTCTC 4 cut(s) 9, 771, 801, 1492
BfaI CTAG 3 cut(s) 1332, 1347, 1503
BisI GCNGC 9 cut(s) 76, 121, 324, 420, 440, 470, 584, 674, 783
BlsI GCNGC 9 cut(s) 77, 122, 325, 421, 441, 471, 585, 675, 784
Bme1390I CCNGG 1 cut(s) 951
Bme18I GGWCC 2 cut(s) 109, 1449
BmgBI CACGTC 2 cut(s) 70, 340
BmgT120I GGNCC 2 cut(s) 109, 1449
BmiI GGNNCC 3 cut(s) 110, 861, 1021
BmrFI CCNGG 1 cut(s) 951
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 3 cut(s) 327, 1213, 1312
BmuI ACTGGG 1 cut(s) 115
BpiI GAAGAC 4 cut(s) 875, 1179, 1263, 1284
BpmI CTGGAG 1 cut(s) 1552
Bpu14I TTCGAA 1 cut(s) 1312
BpuEI CTTGAG 1 cut(s) 498
BsaAI YACGTR 2 cut(s) 133, 523
BsaHI GRCGYC 2 cut(s) 372, 1373
BsaJI CCNNGG 2 cut(s) 118, 1113
BsaWI WCCGGW 2 cut(s) 547, 1451
BsaXI ACNNNNNCTCC 6 cut(s) 587, 617, 1146, 1176, 1438, 1468
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 1575
Bse118I RCCGGY 1 cut(s) 314
Bse1I ACTGG 2 cut(s) 110, 1060
Bse3DI GCAATG 1 cut(s) 935
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 1 cut(s) 951
BseDI CCNNGG 2 cut(s) 118, 1113
BseGI GGATG 5 cut(s) 946, 1036, 1165, 1324, 1486
BseLI CCNNNNNNNGG 2 cut(s) 105, 1575
BseMI GCAATG 1 cut(s) 935
BseMII CTCAG 3 cut(s) 812, 1428, 1503
BseNI ACTGG 2 cut(s) 110, 1060
BseRI GAGGAG 2 cut(s) 212, 314
BseXI GCAGC 3 cut(s) 426, 595, 794
Bsh1236I CGCG 4 cut(s) 114, 120, 259, 830
Bsh1285I CGRYCG 2 cut(s) 118, 427
BshFI GGCC 3 cut(s) 123, 160, 623
BshNI GGYRCC 1 cut(s) 1019
BsiEI CGRYCG 2 cut(s) 118, 427
BsiSI CCGG 6 cut(s) 157, 315, 539, 548, 587, 1452
BslI CCNNNNNNNGG 2 cut(s) 105, 1575
BsmAI GTCTC 4 cut(s) 9, 771, 801, 1492
BsmBI CGTCTC 1 cut(s) 801
BsmI GAATGC 4 cut(s) 675, 784, 1084, 1308
BsnI GGCC 3 cut(s) 123, 160, 623
Bsp119I TTCGAA 1 cut(s) 1312
Bsp1286I GDGCHC 1 cut(s) 198
Bsp13I TCCGGA 1 cut(s) 547
Bsp143I GATC 4 cut(s) 249, 424, 917, 1556
BspANI GGCC 3 cut(s) 123, 160, 623
BspCNI CTCAG 3 cut(s) 811, 1429, 1502
BspEI TCCGGA 1 cut(s) 547
BspFNI CGCG 4 cut(s) 114, 120, 259, 830
BspHI TCATGA 3 cut(s) 246, 1074, 1368
BspLI GGNNCC 3 cut(s) 110, 861, 1021
BspPI GGATC 1 cut(s) 244
BspQI GCTCTTC 3 cut(s) 1185, 1336, 1408
BspT104I TTCGAA 1 cut(s) 1312
BspT107I GGYRCC 1 cut(s) 1019
BsrBI CCGCTC 3 cut(s) 27, 142, 1476
BsrDI GCAATG 1 cut(s) 935
BsrFI RCCGGY 1 cut(s) 314
BsrI ACTGG 2 cut(s) 110, 1060
BssAI RCCGGY 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 118, 1113
BssMI GATC 4 cut(s) 249, 424, 917, 1556
BssNI GRCGYC 2 cut(s) 372, 1373
BssT1I CCWWGG 1 cut(s) 1113
Bst2UI CCWGG 1 cut(s) 951
Bst4CI ACNGT 3 cut(s) 960, 991, 1253
Bst6I CTCTTC 7 cut(s) 437, 1161, 1185, 1287, 1336, 1387, 1408
BstACI GRCGYC 2 cut(s) 372, 1373
BstAPI GCANNNNNTGC 1 cut(s) 754
BstBAI YACGTR 2 cut(s) 133, 523
BstBI TTCGAA 1 cut(s) 1312
BstC8I GCNNGC 5 cut(s) 316, 621, 645, 678, 933
BstDEI CTNAG 3 cut(s) 798, 1437, 1489
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 5 cut(s) 946, 1036, 1165, 1324, 1486
BstFNI CGCG 4 cut(s) 114, 120, 259, 830
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 4 cut(s) 252, 427, 920, 1559
BstMAI GTCTC 4 cut(s) 9, 771, 801, 1492
BstMBI GATC 4 cut(s) 249, 424, 917, 1556
BstMCI CGRYCG 2 cut(s) 118, 427
BstMWI GCNNNNNNNGC 7 cut(s) 72, 120, 320, 445, 754, 937, 1572
BstNI CCWGG 1 cut(s) 951
BstSCI CCNGG 1 cut(s) 949
BstUI CGCG 4 cut(s) 114, 120, 259, 830
BstV1I GCAGC 3 cut(s) 426, 595, 794
BstV2I GAAGAC 4 cut(s) 875, 1179, 1263, 1284
BsuRI GGCC 3 cut(s) 123, 160, 623
BtgI CCRYGG 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 304
BtrI CACGTC 2 cut(s) 70, 340
BtsCI GGATG 5 cut(s) 946, 1036, 1165, 1324, 1486
BtsIMutI CAGTG 1 cut(s) 1258
Cac8I GCNNGC 5 cut(s) 316, 621, 645, 678, 933
CciI TCATGA 3 cut(s) 246, 1074, 1368
CfoI GCGC 1 cut(s) 261
Cfr10I RCCGGY 1 cut(s) 314
Cfr13I GGNCC 2 cut(s) 109, 1449
Cfr42I CCGCGG 1 cut(s) 121
CseI GACGC 2 cut(s) 380, 1381
CviAII CATG 5 cut(s) 247, 839, 1075, 1238, 1369
DdeI CTNAG 3 cut(s) 798, 1437, 1489
DpnI GATC 4 cut(s) 251, 426, 919, 1558
DpnII GATC 4 cut(s) 249, 424, 917, 1556
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 2 cut(s) 158, 621
Eam1104I CTCTTC 7 cut(s) 437, 1161, 1185, 1287, 1336, 1387, 1408
EarI CTCTTC 7 cut(s) 437, 1161, 1185, 1287, 1336, 1387, 1408
EciI GGCGGA 2 cut(s) 266, 332
Eco130I CCWWGG 1 cut(s) 1113
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 109, 1449
Eco57I CTGAAG 2 cut(s) 746, 1248
Eco72I CACGTG 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 949
EcoT14I CCWWGG 1 cut(s) 1113
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 1113
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 5 cut(s) 250, 842, 1078, 1241, 1372
FalI AAGNNNNNCTT 2 cut(s) 1402, 1434
FatI CATG 5 cut(s) 246, 838, 1074, 1237, 1368
FauI CCCGC 6 cut(s) 135, 242, 319, 360, 924, 1469
Fnu4HI GCNGC 9 cut(s) 76, 121, 324, 420, 440, 470, 584, 674, 783
FokI GGATG 5 cut(s) 933, 1023, 1172, 1331, 1493
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 9 cut(s) 76, 121, 324, 420, 440, 470, 584, 674, 783
FspBI CTAG 3 cut(s) 1332, 1347, 1503
GlaI GCGC 1 cut(s) 260
GluI GCNGC 9 cut(s) 76, 121, 324, 420, 440, 470, 584, 674, 783
GsuI CTGGAG 1 cut(s) 1552
HaeIII GGCC 3 cut(s) 123, 160, 623
HapII CCGG 6 cut(s) 157, 315, 539, 548, 587, 1452
HgaI GACGC 2 cut(s) 380, 1381
HhaI GCGC 1 cut(s) 261
Hin1I GRCGYC 2 cut(s) 372, 1373
Hin1II CATG 5 cut(s) 250, 842, 1078, 1241, 1372
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HincII GTYRAC 1 cut(s) 1249
HindII GTYRAC 1 cut(s) 1249
HinfI GANTC 3 cut(s) 809, 1145, 1214
HpaII CCGG 6 cut(s) 157, 315, 539, 548, 587, 1452
HphI GGTGA 7 cut(s) 10, 217, 340, 463, 935, 1061, 1581
Hpy166II GTNNAC 5 cut(s) 91, 526, 1249, 1457, 1537
Hpy188I TCNGA 7 cut(s) 193, 396, 801, 814, 864, 1222, 1429
Hpy8I GTNNAC 5 cut(s) 91, 526, 1249, 1457, 1537
Hpy99I CGWCG 2 cut(s) 269, 374
HpyAV CCTTC 8 cut(s) 31, 94, 998, 1081, 1126, 1193, 1386, 1437
HpyCH4III ACNGT 3 cut(s) 960, 991, 1253
HpyCH4IV ACGT 4 cut(s) 69, 132, 339, 522
HpyCH4V TGCA 3 cut(s) 782, 838, 850
HpyF10VI GCNNNNNNNGC 7 cut(s) 72, 120, 320, 445, 754, 937, 1572
HpyF3I CTNAG 3 cut(s) 798, 1437, 1489
HpySE526I ACGT 4 cut(s) 69, 132, 339, 522
Hsp92I GRCGYC 2 cut(s) 372, 1373
Hsp92II CATG 5 cut(s) 250, 842, 1078, 1241, 1372
HspAI GCGC 1 cut(s) 259
Kpn2I TCCGGA 1 cut(s) 547
KroI GCCGGC 1 cut(s) 314
KroNI GCCGGC 1 cut(s) 316
KspI CCGCGG 1 cut(s) 121
Kzo9I GATC 4 cut(s) 249, 424, 917, 1556
LguI GCTCTTC 3 cut(s) 1185, 1336, 1408
LmnI GCTCC 4 cut(s) 32, 1234, 1473, 1571
Lsp1109I GCAGC 3 cut(s) 426, 595, 794
LweI GCATC 3 cut(s) 327, 1213, 1312
MaeI CTAG 3 cut(s) 1332, 1347, 1503
MaeII ACGT 4 cut(s) 69, 132, 339, 522
MaeIII GTNAC 3 cut(s) 400, 803, 1300
MalI GATC 4 cut(s) 251, 426, 919, 1558
MbiI CCGCTC 3 cut(s) 27, 142, 1476
MboI GATC 4 cut(s) 249, 424, 917, 1556
MhlI GDGCHC 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 623
MluCI AATT 4 cut(s) 1137, 1357, 1543, 1603
MluNI TGGCCA 1 cut(s) 623
MlyI GAGTC 1 cut(s) 818
MmeI TCCRAC 3 cut(s) 573, 587, 792
Mox20I TGGCCA 1 cut(s) 623
MroI TCCGGA 1 cut(s) 547
MroNI GCCGGC 1 cut(s) 314
MscI TGGCCA 1 cut(s) 623
MseI TTAA 2 cut(s) 558, 927
MslI CAYNNNNRTG 3 cut(s) 533, 1242, 1313
Msp20I TGGCCA 1 cut(s) 623
MspA1I CMGCKG 3 cut(s) 120, 472, 1042
MspI CCGG 6 cut(s) 157, 315, 539, 548, 587, 1452
MspR9I CCNGG 1 cut(s) 951
Mva1269I GAATGC 4 cut(s) 675, 784, 1084, 1308
MvaI CCWGG 1 cut(s) 951
MvnI CGCG 4 cut(s) 114, 120, 259, 830
MwoI GCNNNNNNNGC 7 cut(s) 72, 120, 320, 445, 754, 937, 1572
NaeI GCCGGC 1 cut(s) 316
NdeII GATC 4 cut(s) 249, 424, 917, 1556
NgoMIV GCCGGC 1 cut(s) 314
NlaIII CATG 5 cut(s) 250, 842, 1078, 1241, 1372
NlaIV GGNNCC 3 cut(s) 110, 861, 1021
NmuCI GTSAC 3 cut(s) 400, 803, 1300
NspV TTCGAA 1 cut(s) 1312
OliI CACNNNNGTG 1 cut(s) 533
PagI TCATGA 3 cut(s) 246, 1074, 1368
PciSI GCTCTTC 3 cut(s) 1185, 1336, 1408
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PctI GAATGC 4 cut(s) 675, 784, 1084, 1308
PdiI GCCGGC 1 cut(s) 316
PfeI GAWTC 2 cut(s) 1145, 1214
PflMI CCANNNNNTGG 1 cut(s) 105
PfoI TCCNGGA 1 cut(s) 949
PkrI GCNGC 9 cut(s) 77, 122, 325, 421, 441, 471, 585, 675, 784
Ple19I CGATCG 1 cut(s) 427
PleI GAGTC 1 cut(s) 817
PmaCI CACGTG 1 cut(s) 133
PmlI CACGTG 1 cut(s) 133
PpsI GAGTC 1 cut(s) 817
Ppu21I YACGTR 2 cut(s) 133, 523
Psp6I CCWGG 1 cut(s) 949
PspCI CACGTG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 949
PspN4I GGNNCC 3 cut(s) 110, 861, 1021
PspPI GGNCC 2 cut(s) 109, 1449
PvuI CGATCG 1 cut(s) 427
RseI CAYNNNNRTG 3 cut(s) 533, 1242, 1313
SacII CCGCGG 1 cut(s) 121
SapI GCTCTTC 3 cut(s) 1185, 1336, 1408
SaqAI TTAA 2 cut(s) 558, 927
SatI GCNGC 9 cut(s) 76, 121, 324, 420, 440, 470, 584, 674, 783
Sau3AI GATC 4 cut(s) 249, 424, 917, 1556
Sau96I GGNCC 2 cut(s) 109, 1449
SchI GAGTC 1 cut(s) 818
ScrFI CCNGG 1 cut(s) 951
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 3 cut(s) 327, 1213, 1312
Sfr303I CCGCGG 1 cut(s) 121
SfuI TTCGAA 1 cut(s) 1312
SgrBI CCGCGG 1 cut(s) 121
SinI GGWCC 2 cut(s) 109, 1449
SmiMI CAYNNNNRTG 3 cut(s) 533, 1242, 1313
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
Sse9I AATT 4 cut(s) 1137, 1357, 1543, 1603
SspMI CTAG 3 cut(s) 1332, 1347, 1503
StyD4I CCNGG 1 cut(s) 949
StyI CCWWGG 1 cut(s) 1113
TaaI ACNGT 3 cut(s) 960, 991, 1253
TaiI ACGT 4 cut(s) 72, 135, 342, 525
TasI AATT 4 cut(s) 1137, 1357, 1543, 1603
TauI GCSGC 6 cut(s) 78, 123, 326, 422, 472, 676
TfiI GAWTC 2 cut(s) 1145, 1214
Tru1I TTAA 2 cut(s) 558, 927
Tru9I TTAA 2 cut(s) 558, 927
TscAI CASTG 1 cut(s) 1258
TseFI GTSAC 3 cut(s) 400, 803, 1300
TseI GCWGC 3 cut(s) 439, 583, 782
Tsp45I GTSAC 3 cut(s) 400, 803, 1300
TspDTI ATGAA 5 cut(s) 1091, 1278, 1290, 1302, 1497
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 1 cut(s) 1258
Van91I CCANNNNNTGG 1 cut(s) 105
VpaK11BI GGWCC 2 cut(s) 109, 1449
XapI RAATTY 1 cut(s) 1543
XbaI TCTAGA 1 cut(s) 1502
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XspI CTAG 3 cut(s) 1332, 1347, 1503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.