Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8338777.1

Orthogroup ID

OG0014511

Physical Location & Seq

Genomic Coordinates Reverse (-)

79 .. 981

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8338777.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atggataagaagctgaagaagtggattgatgagtggcagaagttgccgtatgtgtctccttatgagaatgcagctcatctgtcgtctcagagtgacgagtcggataagtgggccgtcgcggttttgcatgagcttctgcatattttggttccgaagaagacagacagggagaatgttttggctctgggagagtatttggggattagatcgaggtttaagcgggcattgcttcaccatcctggaatactgtatgtgtcgagcaagattaggacttatacagttgtgttgagagaagggtataagaggggtgccattatcgaaaatcatccgctgatggacataagaaaccagtatattcacctcatgaatgctgtgaaggaagatggtaaaacgataagttccaaggagaaaaagaagaagaagggaattgaagattctaaaggagaggatgtagaagaggaagacgatgacaatgaggaagagctggaaggggagttgtgtgattcgtctgatgctgaagtggagcatgacaatgttgacagtgaagacgatgaagaagaagatgaagacgatgatgaagaagagggtgtgacaagcattcgaatggatgatgctaatactagaggaagaagagctaggaaatctaattttgatgtcatgacgccttccagaaatgctggaagaggaagttcaggtcaaagaagagcttggaaatctgataatactgcgagaaggaggtccggtggacaataccctcgtaggagcggggatgaagtctcagcagaaacttctagaagaacacaagctgatgttaggcataatgtccaccaaaattcaagagaaagatcaaatcgctccagaagcagggggagttattcaccagacaagaagaattatgtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PORR

Protein Analysis

300

Amino Acids

34.53

Weight (kDa)

5.79

Isoelectric Point (pI)

60.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71850
fragaria_vesca	FvH4_4g08630 FvH4_4g08630
malus_domestica	MD10G1045200.v1.1
prunus_persica	Prupe.8G052100_v2.0.a1
pyrus_communis	pycom10g03160
rosa_chinensis	RchiOBHm_Chr4g0405141
rosa_laevigata	RLG00000008869
rosa_multiflora	Rmu_co8338777.1_g000001 Rmu_ssc0000255.1_g000039
rosa_roxburghii	Rroxscaffold_5G00349370
rosa_rugosa	Rorug04G0054000 Rorug04G0054100
rosa_samantha	Rh4BG122500 Rh4CG136300 Rh4DG122700
rosa_wichuraiana	Rw4G010430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AccBSI	CCGCTC	1 cut(s)	765
AccII	CGCG	1 cut(s)	119
AciI	CCGC	4 cut(s)	119, 220, 329, 765
AcsI	RAATTY	1 cut(s)	832
AcuI	CTGAAG	2 cut(s)	35, 537
AcyI	GRCGYC	1 cut(s)	662
AfiI	CCNNNNNNNGG	1 cut(s)	864
AgsI	TTSAA	2 cut(s)	431, 837
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	7 cut(s)	13, 74, 133, 484, 635, 707, 806
AluI	AGCT	7 cut(s)	13, 74, 133, 484, 635, 707, 806
Alw26I	GTCTC	3 cut(s)	60, 90, 781
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	1 cut(s)	832
AspS9I	GGNCC	2 cut(s)	111, 738
AsuHPI	GGTGA	3 cut(s)	224, 350, 870
AsuII	TTCGAA	1 cut(s)	601
AvaII	GGWCC	1 cut(s)	738
BanI	GGYRCC	1 cut(s)	308
BbsI	GAAGAC	4 cut(s)	164, 468, 552, 573
BbvI	GCAGC	1 cut(s)	83
BccI	CCATC	3 cut(s)	243, 328, 377
BceAI	ACGGC	2 cut(s)	31, 98
BciT130I	CCWGG	1 cut(s)	240
BcoDI	GTCTC	3 cut(s)	60, 90, 781
BfaI	CTAG	3 cut(s)	621, 636, 792
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	738
BmgT120I	GGNCC	2 cut(s)	111, 738
BmiI	GGNNCC	2 cut(s)	150, 310
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	502, 601
BpiI	GAAGAC	4 cut(s)	164, 468, 552, 573
BpmI	CTGGAG	1 cut(s)	841
Bpu14I	TTCGAA	1 cut(s)	601
BsaHI	GRCGYC	1 cut(s)	662
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	740
BsaXI	ACNNNNNCTCC	4 cut(s)	435, 465, 727, 757
Bsc4I	CCNNNNNNNGG	1 cut(s)	864
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	5 cut(s)	235, 325, 454, 613, 775
BseLI	CCNNNNNNNGG	1 cut(s)	864
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	2 cut(s)	101, 792
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	83
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	1 cut(s)	113
BshNI	GGYRCC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	741
BslI	CCNNNNNNNGG	1 cut(s)	864
BsmAI	GTCTC	3 cut(s)	60, 90, 781
BsmBI	CGTCTC	1 cut(s)	90
BsmI	GAATGC	3 cut(s)	73, 373, 597
BsnI	GGCC	1 cut(s)	113
Bsp119I	TTCGAA	1 cut(s)	601
Bsp143I	GATC	2 cut(s)	206, 845
BspACI	CCGC	4 cut(s)	119, 220, 329, 765
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	2 cut(s)	100, 791
BspFNI	CGCG	1 cut(s)	119
BspHI	TCATGA	2 cut(s)	363, 657
BspLI	GGNNCC	2 cut(s)	150, 310
BspQI	GCTCTTC	3 cut(s)	474, 625, 697
BspT104I	TTCGAA	1 cut(s)	601
BspT107I	GGYRCC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	765
BsrDI	GCAATG	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	2 cut(s)	206, 845
BssNI	GRCGYC	1 cut(s)	662
BssT1I	CCWWGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	3 cut(s)	249, 280, 542
Bst6I	CTCTTC	6 cut(s)	450, 474, 576, 625, 676, 697
BstACI	GRCGYC	1 cut(s)	662
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	2 cut(s)	87, 778
BstF5I	GGATG	5 cut(s)	235, 325, 454, 613, 775
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	2 cut(s)	209, 848
BstMAI	GTCTC	3 cut(s)	60, 90, 781
BstMBI	GATC	2 cut(s)	206, 845
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 226, 861
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	83
BstV2I	GAAGAC	4 cut(s)	164, 468, 552, 573
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	5 cut(s)	235, 325, 454, 613, 775
BtsIMutI	CAGTG	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	222
CciI	TCATGA	2 cut(s)	363, 657
Cfr13I	GGNCC	2 cut(s)	111, 738
CseI	GACGC	1 cut(s)	670
CviAII	CATG	4 cut(s)	128, 364, 527, 658
CviJI	RGCY	9 cut(s)	13, 74, 113, 133, 182, 484, 635, 707, 806
CviKI_1	RGCY	9 cut(s)	13, 74, 113, 133, 182, 484, 635, 707, 806
DdeI	CTNAG	2 cut(s)	87, 778
DpnI	GATC	2 cut(s)	208, 847
DpnII	GATC	2 cut(s)	206, 845
Eam1104I	CTCTTC	6 cut(s)	450, 474, 576, 625, 676, 697
EarI	CTCTTC	6 cut(s)	450, 474, 576, 625, 676, 697
Eco130I	CCWWGG	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	738
Eco57I	CTGAAG	2 cut(s)	35, 537
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	4 cut(s)	131, 367, 530, 661
FalI	AAGNNNNNCTT	2 cut(s)	691, 723
FatI	CATG	4 cut(s)	127, 363, 526, 657
FauI	CCCGC	2 cut(s)	213, 758
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	5 cut(s)	222, 312, 461, 620, 782
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	3 cut(s)	621, 636, 792
GluI	GCNGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	841
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	741
HgaI	GACGC	1 cut(s)	670
Hin1I	GRCGYC	1 cut(s)	662
Hin1II	CATG	4 cut(s)	131, 367, 530, 661
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	3 cut(s)	98, 434, 503
HpaII	CCGG	1 cut(s)	741
HphI	GGTGA	3 cut(s)	224, 350, 870
Hpy166II	GTNNAC	3 cut(s)	538, 746, 826
Hpy188I	TCNGA	5 cut(s)	90, 103, 153, 511, 718
Hpy188III	TCNNGA	6 cut(s)	364, 658, 669, 792, 837, 858
Hpy8I	GTNNAC	3 cut(s)	538, 746, 826
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	6 cut(s)	287, 370, 415, 482, 675, 726
HpyCH4III	ACNGT	3 cut(s)	249, 280, 542
HpyCH4V	TGCA	3 cut(s)	71, 127, 139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 226, 861
HpyF3I	CTNAG	2 cut(s)	87, 778
Hsp92I	GRCGYC	1 cut(s)	662
Hsp92II	CATG	4 cut(s)	131, 367, 530, 661
Kzo9I	GATC	2 cut(s)	206, 845
LguI	GCTCTTC	3 cut(s)	474, 625, 697
LmnI	GCTCC	3 cut(s)	523, 762, 860
Lsp1109I	GCAGC	1 cut(s)	83
LweI	GCATC	2 cut(s)	502, 601
MaeI	CTAG	3 cut(s)	621, 636, 792
MaeIII	GTNAC	2 cut(s)	92, 589
MalI	GATC	2 cut(s)	208, 847
MbiI	CCGCTC	1 cut(s)	765
MboI	GATC	2 cut(s)	206, 845
MluCI	AATT	4 cut(s)	426, 646, 832, 892
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	81
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	2 cut(s)	531, 602
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	1 cut(s)	741
MspR9I	CCNGG	1 cut(s)	240
Mva1269I	GAATGC	3 cut(s)	73, 373, 597
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	43, 226, 861
NdeII	GATC	2 cut(s)	206, 845
NlaIII	CATG	4 cut(s)	131, 367, 530, 661
NlaIV	GGNNCC	2 cut(s)	150, 310
NmuCI	GTSAC	2 cut(s)	92, 589
NspV	TTCGAA	1 cut(s)	601
PagI	TCATGA	2 cut(s)	363, 657
PciSI	GCTCTTC	3 cut(s)	474, 625, 697
PctI	GAATGC	3 cut(s)	73, 373, 597
PfeI	GAWTC	2 cut(s)	434, 503
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	150, 310
PspPI	GGNCC	2 cut(s)	111, 738
RseI	CAYNNNNRTG	2 cut(s)	531, 602
SapI	GCTCTTC	3 cut(s)	474, 625, 697
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	2 cut(s)	206, 845
Sau96I	GGNCC	2 cut(s)	111, 738
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	240
SfaNI	GCATC	2 cut(s)	502, 601
SfuI	TTCGAA	1 cut(s)	601
SinI	GGWCC	1 cut(s)	738
SmiMI	CAYNNNNRTG	2 cut(s)	531, 602
Sse9I	AATT	4 cut(s)	426, 646, 832, 892
SsiI	CCGC	4 cut(s)	119, 220, 329, 765
SspMI	CTAG	3 cut(s)	621, 636, 792
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	3 cut(s)	249, 280, 542
TaqI	TCGA	4 cut(s)	209, 257, 318, 601
TasI	AATT	4 cut(s)	426, 646, 832, 892
TfiI	GAWTC	2 cut(s)	434, 503
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	547
TseFI	GTSAC	2 cut(s)	92, 589
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	2 cut(s)	92, 589
TspDTI	ATGAA	5 cut(s)	380, 567, 579, 591, 786
TspRI	CASTG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	738
XapI	RAATTY	1 cut(s)	832
XbaI	TCTAGA	1 cut(s)	791
XspI	CTAG	3 cut(s)	621, 636, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.