FvH4_4g08630

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014511
Physical Location & Seq
Forward (+)
9028037 .. 9033626
5590 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08630.t2

Sequence Viewer

Length: 1620 bp
ATGCCTCTCTTCCACATCCCCTCCCGCTCCGTCCTCAAACCCCACCACCACCACCGCCACATCATCCGTCGAACCTTCATCGACACCACCACCATAAACTGGGTCCGCGACCGCGGCCTCGACCACGTAGTCGAGCGGGAGAAAAACCTCCGGCCAATAATCAACATCAAAAACCTAATCAAATCAGAGCCCTCCAAATCCCTCCCCATTTCCATCCTCACCAAATCCCGCCACTCCCTCCAAATCCCCACCCGCCCCGTCAACTTCGTCCGCCAATTCCCCTCCATTTTCGAGGAGTTCCTCCCCGGCGGCATCCCCGGAGGCATCGCCTCCGTCCAGCCCCACCTCCGCCTCACCCCGCAGCTCCTCGACATCGACTCCAAGGAGCATCTCATGTACCAGAGCCACTCCTACACCCACCAGGCCGCCGATCGCCTCTTCAAGATGCTCATGCTCGTCCGCTGTAACAGACTGCCGCTCAATCTCATCGAGCTTTTCAAATGGGATTTGGGGCTCCCTGAGGACTATGTGGAGACCATCGTGCCGGAGTTTCCGGATTACTTCAAGGTTGCAGTCGGGAAATACGGGCTGCTGGAGCTGGAGATGGTGTGCTGGAGTGATGAGCTGGCCACTTCGGTTATGGAGAAGAAGAACAAAGCGGCCAAGGGGATGCCTGTTGCGTTTCCTATGCAGTTTTCGAGAGGGTTTGAGATGGATAAGAAGATGAAGAAGTGGATTGATGAGTGGCAGAAGCTGCCGTATGTGTCTCCTTATGAGAATGCAGCTCATCTTTCTTCTCAGAGTGACGAATCGGATAAGTGGGCCGTTGCGGTTTTGCATGAGCTGCTGCATATTCTGGTGCCCAAGAAGACTGATAGGGAGAATATTCTGGCTCTCGGTGAGTATTTGGGGATTCGGTCGAGGTTTAAGAGGGCATTGCTTCACCATCCGGGGATATTGCATGTTTCAAGCAAGAACCGGACTTATACGGTTGTATTGAGAGAAGGGTATAAGAGGGGTGCTATTATTGAGAATCATCCGCTGATGGATATAAGAAACGAGTATATTCACCTCATGAATGCTGTGAAGGAAGATGGTAAAGGGGTAAGTCCTAGGGAGAAGAGGAAGAGGAAGAAGGGAGTTGAAGATCCTATAAGAGAAGATATAGACGAGGACGATGATGAAAATGAGGAAGAGGAAGGGTACTTGTGTGACTCATCTGATGCTGAAGTTGAGCATGATGAGGTTGACAGTGAAGACAATGAAGAAGAGGATGAAGACGATGATGAGGATGAAGAAGAGAGTATGAGCAACATTTGGATGAATGATGCTAATACTAGAGGAAGAAGAGCTAGGAAATCTAATTTTGATGTCATGACACCTTCCAGAAATGCTGGAAGAGGAAGTTCAGGTCAAAAAAGAGCCTGGAAATCCGATAATGCTGAGAGAGGGGGGTCAGGTGGACAATACCCTGGTAGGAGAGGAGAGAGAGTCTCACCTGATACTTCTAGAACAACACAATCTGATGTTAGGCATAATGTCCGCCAGAATACAACAGAAGGATCTAATCTGTCCAGAAGCAGGGTGAGGTCTTCACCAGACAAGAAGACTTATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

540

Amino Acids

62.2

Weight (kDa)

6.45

Isoelectric Point (pI)

57.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 35 - 362 8.5e-110 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014511)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71850
fragaria_vesca FvH4_4g08630 FvH4_4g08630
malus_domestica MD10G1045200.v1.1
prunus_persica Prupe.8G052100_v2.0.a1
pyrus_communis pycom10g03160
rosa_chinensis RchiOBHm_Chr4g0405141
rosa_laevigata RLG00000008869
rosa_multiflora Rmu_co8338777.1_g000001 Rmu_ssc0000255.1_g000039
rosa_roxburghii Rroxscaffold_5G00349370
rosa_rugosa Rorug04G0054000 Rorug04G0054100
rosa_samantha Rh4BG122500 Rh4CG136300 Rh4DG122700
rosa_wichuraiana Rw4G010430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 859
AccB7I CCANNNNNTGG 1 cut(s) 99
AccBSI CCGCTC 3 cut(s) 27, 136, 478
AccII CGCG 2 cut(s) 108, 114
AccIII TCCGGA 1 cut(s) 553
AclWI GGATC 2 cut(s) 1142, 1570
AcoI YGGCCR 3 cut(s) 152, 627, 660
AcuI CTGAAG 1 cut(s) 1248
AfaI GTAC 2 cut(s) 398, 1205
AfiI CCNNNNNNNGG 2 cut(s) 99, 1581
AgsI TTSAA 5 cut(s) 442, 499, 565, 969, 1145
AjnI CCWGG 3 cut(s) 420, 1424, 1471
AluBI AGCT 8 cut(s) 364, 493, 598, 625, 754, 785, 844, 1352
AluI AGCT 8 cut(s) 364, 493, 598, 625, 754, 785, 844, 1352
Alw26I GTCTC 3 cut(s) 527, 771, 1498
AlwI GGATC 2 cut(s) 1142, 1570
AlwNI CAGNNNCTG 1 cut(s) 754
Aor13HI TCCGGA 1 cut(s) 553
AoxI GGCC 6 cut(s) 115, 152, 423, 627, 660, 822
ApeKI GCWGC 6 cut(s) 361, 589, 754, 782, 844, 847
AspA2I CCTAGG 1 cut(s) 1112
AspS9I GGNCC 2 cut(s) 103, 822
AsuC2I CCSGG 3 cut(s) 306, 318, 951
AsuHPI GGTGA 8 cut(s) 211, 346, 911, 935, 1061, 1488, 1587, 1597
AvaII GGWCC 1 cut(s) 103
AvrII CCTAGG 1 cut(s) 1112
AxyI CCTNAGG 1 cut(s) 519
BaeGI GKGCMC 1 cut(s) 864
BaeI ACNNNNGTAYC 2 cut(s) 1195, 1228
BalI TGGCCA 1 cut(s) 629
BanI GGYRCC 1 cut(s) 859
BanII GRGCYC 2 cut(s) 192, 516
BbsI GAAGAC 5 cut(s) 875, 1263, 1284, 1584, 1613
BbvI GCAGC 6 cut(s) 373, 576, 741, 794, 831, 834
BccI CCATC 7 cut(s) 221, 545, 598, 706, 954, 1039, 1088
BceAI ACGGC 2 cut(s) 742, 809
BciT130I CCWGG 3 cut(s) 422, 1426, 1473
BcnI CCSGG 3 cut(s) 306, 318, 951
BcoDI GTCTC 3 cut(s) 527, 771, 1498
BfaI CTAG 4 cut(s) 1113, 1338, 1353, 1509
BlnI CCTAGG 1 cut(s) 1112
Bme1390I CCNGG 6 cut(s) 306, 318, 422, 951, 1426, 1473
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 2 cut(s) 103, 822
BmiI GGNNCC 3 cut(s) 104, 515, 861
BmrFI CCNGG 6 cut(s) 306, 318, 422, 951, 1426, 1473
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 7 cut(s) 321, 333, 397, 435, 660, 1213, 1318
BmuI ACTGGG 1 cut(s) 109
BpiI GAAGAC 5 cut(s) 875, 1263, 1284, 1584, 1613
BplI GAGNNNNNCTC 2 cut(s) 1478, 1510
BpmI CTGGAG 3 cut(s) 614, 620, 634
BpuMI CCSGG 3 cut(s) 306, 318, 951
BsaAI YACGTR 1 cut(s) 127
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 8 cut(s) 112, 304, 316, 381, 663, 950, 1112, 1471
BsaWI WCCGGW 2 cut(s) 553, 978
BsaXI ACNNNNNCTCC 8 cut(s) 5, 35, 362, 392, 593, 623, 1476, 1506
Bsc4I CCNNNNNNNGG 2 cut(s) 99, 1581
Bse1I ACTGG 1 cut(s) 104
Bse21I CCTNAGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 935
BseAI TCCGGA 1 cut(s) 553
BseBI CCWGG 3 cut(s) 422, 1426, 1473
BseDI CCNNGG 8 cut(s) 112, 304, 316, 381, 663, 950, 1112, 1471
BseLI CCNNNNNNNGG 2 cut(s) 99, 1581
BseMI GCAATG 1 cut(s) 935
BseMII CTCAG 3 cut(s) 510, 812, 1434
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 3 cut(s) 308, 356, 1497
BseSI GKGCMC 1 cut(s) 864
BseXI GCAGC 6 cut(s) 373, 576, 741, 794, 831, 834
Bsh1236I CGCG 2 cut(s) 108, 114
Bsh1285I CGRYCG 3 cut(s) 112, 433, 920
BshFI GGCC 6 cut(s) 117, 154, 425, 629, 662, 824
BshNI GGYRCC 1 cut(s) 859
BsiEI CGRYCG 3 cut(s) 112, 433, 920
BsiSI CCGG 7 cut(s) 151, 306, 318, 545, 554, 950, 979
BslI CCNNNNNNNGG 2 cut(s) 99, 1581
BsmAI GTCTC 3 cut(s) 527, 771, 1498
BsmI GAATGC 2 cut(s) 784, 1084
BsnI GGCC 6 cut(s) 117, 154, 425, 629, 662, 824
Bso31I GGTCTC 1 cut(s) 527
Bsp1286I GDGCHC 3 cut(s) 192, 516, 864
Bsp13I TCCGGA 1 cut(s) 553
Bsp143I GATC 3 cut(s) 430, 1147, 1562
BspANI GGCC 6 cut(s) 117, 154, 425, 629, 662, 824
BspCNI CTCAG 3 cut(s) 511, 811, 1435
BspEI TCCGGA 1 cut(s) 553
BspFNI CGCG 2 cut(s) 108, 114
BspHI TCATGA 2 cut(s) 1074, 1374
BspLI GGNNCC 3 cut(s) 104, 515, 861
BspPI GGATC 2 cut(s) 1142, 1570
BspQI GCTCTTC 1 cut(s) 1342
BspT107I GGYRCC 1 cut(s) 859
BspTNI GGTCTC 1 cut(s) 527
BsrBI CCGCTC 3 cut(s) 27, 136, 478
BsrDI GCAATG 1 cut(s) 935
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 8 cut(s) 112, 304, 316, 381, 663, 950, 1112, 1471
BssMI GATC 3 cut(s) 430, 1147, 1562
BssT1I CCWWGG 3 cut(s) 381, 663, 1112
Bst2UI CCWGG 3 cut(s) 422, 1426, 1473
Bst4CI ACNGT 2 cut(s) 991, 1253
Bst6I CTCTTC 9 cut(s) 14, 443, 1115, 1121, 1188, 1263, 1293, 1342, 1393
BstAPI GCANNNNNTGC 2 cut(s) 754, 844
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 3 cut(s) 519, 798, 1443
BstDSI CCRYGG 1 cut(s) 112
BstFNI CGCG 2 cut(s) 108, 114
BstKTI GATC 3 cut(s) 433, 1150, 1565
BstMAI GTCTC 3 cut(s) 527, 771, 1498
BstMBI GATC 3 cut(s) 430, 1147, 1562
BstMCI CGRYCG 3 cut(s) 112, 433, 920
BstMWI GCNNNNNNNGC 4 cut(s) 114, 595, 754, 844
BstNI CCWGG 3 cut(s) 422, 1426, 1473
BstNSI RCATGY 1 cut(s) 965
BstSCI CCNGG 6 cut(s) 304, 316, 420, 949, 1424, 1471
BstSLI GKGCMC 1 cut(s) 864
BstUI CGCG 2 cut(s) 108, 114
BstV1I GCAGC 6 cut(s) 373, 576, 741, 794, 831, 834
BstV2I GAAGAC 5 cut(s) 875, 1263, 1284, 1584, 1613
BstX2I RGATCY 2 cut(s) 1147, 1562
BstYI RGATCY 2 cut(s) 1147, 1562
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 6 cut(s) 117, 154, 425, 629, 662, 824
BtgI CCRYGG 1 cut(s) 112
BtgZI GCGATG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 1258
Cac8I GCNNGC 1 cut(s) 627
CaiI CAGNNNCTG 1 cut(s) 754
CciI TCATGA 2 cut(s) 1074, 1374
Cfr13I GGNCC 2 cut(s) 103, 822
Cfr42I CCGCGG 1 cut(s) 115
Csp6I GTAC 2 cut(s) 397, 1204
CviAII CATG 7 cut(s) 394, 451, 839, 962, 1075, 1238, 1375
CviQI GTAC 2 cut(s) 397, 1204
DdeI CTNAG 3 cut(s) 519, 798, 1443
DpnI GATC 3 cut(s) 432, 1149, 1564
DpnII GATC 3 cut(s) 430, 1147, 1562
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 3 cut(s) 152, 627, 660
Eam1104I CTCTTC 9 cut(s) 14, 443, 1115, 1121, 1188, 1263, 1293, 1342, 1393
EarI CTCTTC 9 cut(s) 14, 443, 1115, 1121, 1188, 1263, 1293, 1342, 1393
EciI GGCGGA 3 cut(s) 260, 338, 1532
Eco130I CCWWGG 3 cut(s) 381, 663, 1112
Eco24I GRGCYC 2 cut(s) 192, 516
Eco31I GGTCTC 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 103
Eco57I CTGAAG 1 cut(s) 1248
Eco81I CCTNAGG 1 cut(s) 519
EcoRII CCWGG 3 cut(s) 420, 1424, 1471
EcoT14I CCWWGG 3 cut(s) 381, 663, 1112
EcoT38I GRGCYC 2 cut(s) 192, 516
ErhI CCWWGG 3 cut(s) 381, 663, 1112
FaeI CATG 7 cut(s) 397, 454, 842, 965, 1078, 1241, 1378
FatI CATG 7 cut(s) 393, 450, 838, 961, 1074, 1237, 1374
FauI CCCGC 5 cut(s) 32, 129, 236, 260, 366
FriOI GRGCYC 2 cut(s) 192, 516
FspBI CTAG 4 cut(s) 1113, 1338, 1353, 1509
GsuI CTGGAG 3 cut(s) 614, 620, 634
HaeIII GGCC 6 cut(s) 117, 154, 425, 629, 662, 824
HapII CCGG 7 cut(s) 151, 306, 318, 545, 554, 950, 979
Hin1II CATG 7 cut(s) 397, 454, 842, 965, 1078, 1241, 1378
HincII GTYRAC 2 cut(s) 262, 1249
HindII GTYRAC 2 cut(s) 262, 1249
HinfI GANTC 6 cut(s) 377, 809, 913, 1033, 1214, 1491
HpaII CCGG 7 cut(s) 151, 306, 318, 545, 554, 950, 979
HphI GGTGA 8 cut(s) 211, 346, 911, 935, 1061, 1488, 1587, 1597
Hpy166II GTNNAC 3 cut(s) 262, 1249, 1463
Hpy188I TCNGA 6 cut(s) 187, 801, 814, 1222, 1435, 1525
Hpy188III TCNNGA 9 cut(s) 442, 554, 577, 699, 1075, 1375, 1386, 1509, 1575
Hpy8I GTNNAC 3 cut(s) 262, 1249, 1463
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 7 cut(s) 85, 998, 1081, 1129, 1193, 1392, 1553
HpyCH4III ACNGT 2 cut(s) 991, 1253
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 6 cut(s) 572, 691, 782, 838, 850, 961
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 595, 754, 844
HpyF3I CTNAG 3 cut(s) 519, 798, 1443
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 7 cut(s) 397, 454, 842, 965, 1078, 1241, 1378
Kpn2I TCCGGA 1 cut(s) 553
KspI CCGCGG 1 cut(s) 115
Kzo9I GATC 3 cut(s) 430, 1147, 1562
LguI GCTCTTC 1 cut(s) 1342
LmnI GCTCC 5 cut(s) 32, 369, 385, 519, 595
Lsp1109I GCAGC 6 cut(s) 373, 576, 741, 794, 831, 834
LweI GCATC 7 cut(s) 321, 333, 397, 435, 660, 1213, 1318
MaeI CTAG 4 cut(s) 1113, 1338, 1353, 1509
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 464, 803, 1211
MalI GATC 3 cut(s) 432, 1149, 1564
MbiI CCGCTC 3 cut(s) 27, 136, 478
MboI GATC 3 cut(s) 430, 1147, 1562
MflI RGATCY 2 cut(s) 1147, 1562
MhlI GDGCHC 3 cut(s) 192, 516, 864
MlsI TGGCCA 1 cut(s) 629
MluCI AATT 2 cut(s) 275, 1363
MluNI TGGCCA 1 cut(s) 629
MlyI GAGTC 3 cut(s) 371, 1208, 1500
Mox20I TGGCCA 1 cut(s) 629
MroI TCCGGA 1 cut(s) 553
MscI TGGCCA 1 cut(s) 629
MseI TTAA 1 cut(s) 927
MslI CAYNNNNRTG 1 cut(s) 1319
Msp20I TGGCCA 1 cut(s) 629
MspA1I CMGCKG 3 cut(s) 114, 462, 1042
MspI CCGG 7 cut(s) 151, 306, 318, 545, 554, 950, 979
MspR9I CCNGG 6 cut(s) 306, 318, 422, 951, 1426, 1473
Mva1269I GAATGC 2 cut(s) 784, 1084
MvaI CCWGG 3 cut(s) 422, 1426, 1473
MvnI CGCG 2 cut(s) 108, 114
MwoI GCNNNNNNNGC 4 cut(s) 114, 595, 754, 844
NciI CCSGG 3 cut(s) 306, 318, 951
NdeII GATC 3 cut(s) 430, 1147, 1562
NlaIII CATG 7 cut(s) 397, 454, 842, 965, 1078, 1241, 1378
NlaIV GGNNCC 3 cut(s) 104, 515, 861
NmuCI GTSAC 2 cut(s) 803, 1211
NspI RCATGY 1 cut(s) 965
PagI TCATGA 2 cut(s) 1074, 1374
PciSI GCTCTTC 1 cut(s) 1342
PctI GAATGC 2 cut(s) 784, 1084
PfeI GAWTC 3 cut(s) 809, 913, 1033
PflMI CCANNNNNTGG 1 cut(s) 99
Ple19I CGATCG 1 cut(s) 433
PleI GAGTC 3 cut(s) 371, 1208, 1499
PpsI GAGTC 3 cut(s) 371, 1208, 1499
Ppu21I YACGTR 1 cut(s) 127
Psp6I CCWGG 3 cut(s) 420, 1424, 1471
PspGI CCWGG 3 cut(s) 420, 1424, 1471
PspN4I GGNNCC 3 cut(s) 104, 515, 861
PspPI GGNCC 2 cut(s) 103, 822
PstNI CAGNNNCTG 1 cut(s) 754
PsuI RGATCY 2 cut(s) 1147, 1562
PvuI CGATCG 1 cut(s) 433
RsaI GTAC 2 cut(s) 398, 1205
RsaNI GTAC 2 cut(s) 397, 1204
RseI CAYNNNNRTG 1 cut(s) 1319
SacII CCGCGG 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 1342
SaqAI TTAA 1 cut(s) 927
Sau3AI GATC 3 cut(s) 430, 1147, 1562
Sau96I GGNCC 2 cut(s) 103, 822
SchI GAGTC 3 cut(s) 371, 1208, 1500
ScrFI CCNGG 6 cut(s) 306, 318, 422, 951, 1426, 1473
SduI GDGCHC 3 cut(s) 192, 516, 864
SfaNI GCATC 7 cut(s) 321, 333, 397, 435, 660, 1213, 1318
Sfr303I CCGCGG 1 cut(s) 115
SgrBI CCGCGG 1 cut(s) 115
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 1319
Sse9I AATT 2 cut(s) 275, 1363
SspI AATATT 1 cut(s) 886
SspMI CTAG 4 cut(s) 1113, 1338, 1353, 1509
StyD4I CCNGG 6 cut(s) 304, 316, 420, 949, 1424, 1471
StyI CCWWGG 3 cut(s) 381, 663, 1112
TaaI ACNGT 2 cut(s) 991, 1253
TaiI ACGT 1 cut(s) 129
TaqII GACCGA 1 cut(s) 906
TasI AATT 2 cut(s) 275, 1363
TauI GCSGC 5 cut(s) 117, 312, 428, 478, 662
TfiI GAWTC 3 cut(s) 809, 913, 1033
Tru1I TTAA 1 cut(s) 927
Tru9I TTAA 1 cut(s) 927
TscAI CASTG 1 cut(s) 1258
TseFI GTSAC 2 cut(s) 803, 1211
TseI GCWGC 6 cut(s) 361, 589, 754, 782, 844, 847
Tsp45I GTSAC 2 cut(s) 803, 1211
TspDTI ATGAA 8 cut(s) 67, 740, 1091, 1197, 1278, 1290, 1308, 1337
TspGWI ACGGA 3 cut(s) 19, 56, 322
TspRI CASTG 1 cut(s) 1258
Van91I CCANNNNNTGG 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 103
XbaI TCTAGA 1 cut(s) 1508
XceI RCATGY 1 cut(s) 965
XcmI CCANNNNNNNNNTGG 1 cut(s) 637
XmaJI CCTAGG 1 cut(s) 1112
XspI CTAG 4 cut(s) 1113, 1338, 1353, 1509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.