AT1G71990

Glycosyltransferase family 10 (fucosyltransferase) C-term

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014607
Physical Location & Seq
Forward (+)
27100210 .. 27102292
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G71990.1

Sequence Viewer

Length: 1206 bp
ATGCCAATGAGATACCTCAACGCAATGGCCGCTCTACTAATGATGTTCTTTACTCTCTTGATCCTCTCTTTCACAGGCATTTTAGAATTCCCATCTGCTTCAACTTCGATGGAGCATTCAATAGACCCGGAACCGAAATTGTCTGATTCAACATCGGATCCATTCAGTGATGTTCTTGTAGCTTATAAAAAATGGGACTTTGAAGTGGGTTGTGCTCGGTTTAGGGAGAATCATAAAGATGCGATTTTGGGTAATGTTAGTTCGGGTTCTTTACAAGAATTTGGTTGTGGTAAGCTTAAGATGAAGCATGTTAAGGTATTGGTTAAAGGGTGGACTTGGATTCCGGATAATTTGGAAAATTTGTATTCTTGTCGTTGTGGGATGACTTGTTTGTGGACTAAATCATCGGTTTTGGCTGATTCACCTGATGCTTTGTTGTTCGAGACAACAACTCCTCCACTACAGAGACGTGTTGGAGATCCGCTCCGTGTGTACATGGAGCTAGAGGCCGGAAGAAAACGCTCAGGCCGTGAAGATATATTCATCAGCTACCATGCGAAAGACGATGTCCAAACAACTTACGCCGGTTCGCTCTTTCATAATAACAGAAACTATCACATCTCTCCACATAAAAACAATGATGTTCTGGTGTATTGGTCTTCCTCAAGATGCCTCCCTCACAGAGATCGTCTAGCAAAGAGCCTACTCGATTTGATTCCCCACCACTCCTTTGGTAAGTGTCTTAACAATGTTGGTGGCTTGGACTCAGCTCTCTCTATGTATCCAGAATGTGTCGCTGAGCACAACGCTGAAGCAAAATGGTACGATCACCTCCACTGCGCTATGTCACACTACAAATTCGTCCTTGCAATCGAAAACACAGCTGTTGAGTCATACGTGACCGAGAAGCTTTTCTATGCGCTCGACTCTGGTTCTGTTCCAATCTATTTTGGGGCCTCTAACGTGCAAGACTTTGTCCCTCCGCATTCCGTGATCGATGGTAGCAAATTCGGCTCGATGCAGGAGTTGGCTGCGTACGTGAAGCGGCTCGGTGATGATCCTGTGGCTTACTCAGAGTACCATGCGTGGAGGCGGTGTGGACTAATGGGGAACTACGGGAAAACCCGTGCGGTGAGTCTCGATACATTGCCATGTCGGTTGTGCGAAGAGATTAGCAGAAGAGGTGGGAAGAACGCCGGAGTTTGA

Protein Analysis

401

Amino Acids

45.1

Weight (kDa)

6.75

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_10 PF00852 214 - 394 7.5e-31 Glycosyltransferase family 10 (fucosyltransferase) C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014607)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71990
fragaria_vesca FvH4_5g31230
malus_domestica MD08G1220600.v1.1 MD15G1411300.v1.1
prunus_persica Prupe.1G557500_v2.0.a1
pyrus_communis pycom08g19140
rosa_chinensis RchiOBHm_Chr7g0226481
rosa_laevigata RLG00000001727
rosa_multiflora Rmu_sc0001423.1_g000068 Rmu_sc0001470.1_g000012
rosa_roxburghii Rroxscaffold_3G00232800
rosa_rugosa Rorug07G0237400
rosa_samantha Rh7AG384600 Rh7BG371400 Rh7CG403900 Rh7DG383500
rosa_wichuraiana Rw7G032300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AccBSI CCGCTC 2 cut(s) 32, 484
AccIII TCCGGA 1 cut(s) 343
AciI CCGC 6 cut(s) 30, 482, 983, 1045, 1093, 1130
AclWI GGATC 5 cut(s) 55, 152, 165, 473, 1052
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 5 cut(s) 86, 278, 358, 857, 1007
AcuI CTGAAG 1 cut(s) 831
AfaI GTAC 4 cut(s) 494, 824, 1037, 1079
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 4 cut(s) 102, 120, 150, 203
AjiI CACGTC 1 cut(s) 470
AluBI AGCT 7 cut(s) 182, 295, 502, 549, 770, 884, 910
AluI AGCT 7 cut(s) 182, 295, 502, 549, 770, 884, 910
Alw21I GWGCWC 2 cut(s) 217, 804
Alw26I GTCTC 3 cut(s) 437, 460, 1142
AlwI GGATC 5 cut(s) 55, 152, 165, 473, 1052
Aor13HI TCCGGA 1 cut(s) 343
AoxI GGCC 4 cut(s) 27, 507, 526, 954
ApeKI GCWGC 1 cut(s) 1031
ApoI RAATTY 5 cut(s) 86, 278, 358, 857, 1007
Asp700I GAANNNNTTC 1 cut(s) 911
AspLEI GCGC 2 cut(s) 842, 922
AspS9I GGNCC 1 cut(s) 954
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 4 cut(s) 414, 821, 1064, 1144
BamHI GGATCC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 2 cut(s) 217, 804
BbvI GCAGC 1 cut(s) 1018
BccI CCATC 3 cut(s) 100, 103, 992
BceAI ACGGC 1 cut(s) 513
BciVI GTATCC 1 cut(s) 792
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 3 cut(s) 437, 460, 1142
BfaI CTAG 2 cut(s) 503, 692
BfmI CTRYAG 1 cut(s) 461
BfrI CTTAAG 1 cut(s) 296
BfuI GTATCC 1 cut(s) 792
BisI GCNGC 3 cut(s) 30, 1032, 1046
BlpI GCTNAGC 1 cut(s) 798
BlsI GCNGC 3 cut(s) 31, 1033, 1047
Bme1390I CCNGG 1 cut(s) 128
BmgBI CACGTC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 954
BmiI GGNNCC 3 cut(s) 132, 159, 955
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 4 cut(s) 229, 418, 659, 1008
BpiI GAAGAC 1 cut(s) 651
BplI GAGNNNNNCTC 2 cut(s) 468, 500
Bpu10I CCTNAGC 1 cut(s) 523
Bpu1102I GCTNAGC 1 cut(s) 798
BpuEI CTTGAG 1 cut(s) 649
BpuMI CCSGG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 996
BsaAI YACGTR 2 cut(s) 898, 1039
BsaWI WCCGGW 1 cut(s) 343
BsaXI ACNNNNNCTCC 6 cut(s) 436, 439, 466, 469, 1081, 1111
Bse118I RCCGGY 1 cut(s) 584
Bse3DI GCAATG 2 cut(s) 30, 1145
BseAI TCCGGA 1 cut(s) 343
BseCI ATCGAT 1 cut(s) 996
BseGI GGATG 1 cut(s) 387
BseMI GCAATG 2 cut(s) 30, 1145
BseMII CTCAG 4 cut(s) 537, 780, 789, 1086
BseRI GAGGAG 1 cut(s) 444
BseXI GCAGC 1 cut(s) 1018
BshFI GGCC 4 cut(s) 29, 509, 528, 956
BshVI ATCGAT 1 cut(s) 996
BsiHKAI GWGCWC 2 cut(s) 217, 804
BsiSI CCGG 5 cut(s) 128, 344, 510, 585, 1197
BsiWI CGTACG 1 cut(s) 1035
BslFI GGGAC 2 cut(s) 209, 962
BsmAI GTCTC 3 cut(s) 437, 460, 1142
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 2 cut(s) 209, 962
BsmI GAATGC 2 cut(s) 115, 985
BsnI GGCC 4 cut(s) 29, 509, 528, 956
Bsp1286I GDGCHC 2 cut(s) 217, 804
Bsp13I TCCGGA 1 cut(s) 343
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 7 cut(s) 60, 157, 478, 685, 826, 993, 1057
Bsp1720I GCTNAGC 1 cut(s) 798
BspACI CCGC 6 cut(s) 30, 482, 983, 1045, 1093, 1130
BspANI GGCC 4 cut(s) 29, 509, 528, 956
BspCNI CTCAG 4 cut(s) 536, 779, 790, 1085
BspDI ATCGAT 1 cut(s) 996
BspEI TCCGGA 1 cut(s) 343
BspLI GGNNCC 3 cut(s) 132, 159, 955
BspPI GGATC 5 cut(s) 55, 152, 165, 473, 1052
BspTI CTTAAG 1 cut(s) 296
BsrBI CCGCTC 2 cut(s) 32, 484
BsrDI GCAATG 2 cut(s) 30, 1145
BsrFI RCCGGY 1 cut(s) 584
BsrGI TGTACA 1 cut(s) 492
BssAI RCCGGY 1 cut(s) 584
BssMI GATC 7 cut(s) 60, 157, 478, 685, 826, 993, 1057
Bst6I CTCTTC 2 cut(s) 1161, 1174
BstAFI CTTAAG 1 cut(s) 296
BstAUI TGTACA 1 cut(s) 492
BstBAI YACGTR 2 cut(s) 898, 1039
BstDEI CTNAG 4 cut(s) 523, 766, 798, 1072
BstF5I GGATG 1 cut(s) 387
BstHHI GCGC 2 cut(s) 842, 922
BstKTI GATC 7 cut(s) 63, 160, 481, 688, 829, 996, 1060
BstMAI GTCTC 3 cut(s) 437, 460, 1142
BstMBI GATC 7 cut(s) 60, 157, 478, 685, 826, 993, 1057
BstMWI GCNNNNNNNGC 2 cut(s) 29, 1011
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 461
BstV1I GCAGC 1 cut(s) 1018
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 2 cut(s) 157, 478
BstXI CCANNNNNNTGG 1 cut(s) 731
BstYI RGATCY 2 cut(s) 157, 478
Bsu15I ATCGAT 1 cut(s) 996
BsuI GTATCC 1 cut(s) 792
BsuRI GGCC 4 cut(s) 29, 509, 528, 956
BsuTUI ATCGAT 1 cut(s) 996
BtrI CACGTC 1 cut(s) 470
BtsCI GGATG 1 cut(s) 387
BtsI GCAGTG 1 cut(s) 835
BtsIMutI CAGTG 2 cut(s) 172, 835
CfoI GCGC 2 cut(s) 842, 922
Cfr10I RCCGGY 1 cut(s) 584
Cfr13I GGNCC 1 cut(s) 954
ClaI ATCGAT 1 cut(s) 996
Csp6I GTAC 4 cut(s) 493, 823, 1036, 1078
CspCI CAANNNNNGTGG 2 cut(s) 736, 771
CviAII CATG 5 cut(s) 308, 496, 554, 1082, 1152
CviQI GTAC 4 cut(s) 493, 823, 1036, 1078
DdeI CTNAG 4 cut(s) 523, 766, 798, 1072
DpnI GATC 7 cut(s) 62, 159, 480, 687, 828, 995, 1059
DpnII GATC 7 cut(s) 60, 157, 478, 685, 826, 993, 1057
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 1161, 1174
EarI CTCTTC 2 cut(s) 1161, 1174
Eco57I CTGAAG 1 cut(s) 831
EcoO109I RGGNCCY 1 cut(s) 954
EcoRI GAATTC 1 cut(s) 86
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 5 cut(s) 311, 499, 557, 1085, 1155
FaqI GGGAC 2 cut(s) 209, 962
FatI CATG 5 cut(s) 307, 495, 553, 1081, 1151
Fnu4HI GCNGC 3 cut(s) 30, 1032, 1046
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 3 cut(s) 30, 1032, 1046
FspBI CTAG 2 cut(s) 503, 692
GlaI GCGC 2 cut(s) 841, 921
GluI GCNGC 3 cut(s) 30, 1032, 1046
HaeIII GGCC 4 cut(s) 29, 509, 528, 956
HapII CCGG 5 cut(s) 128, 344, 510, 585, 1197
HhaI GCGC 2 cut(s) 842, 922
Hin1II CATG 5 cut(s) 311, 499, 557, 1085, 1155
Hin6I GCGC 2 cut(s) 840, 920
HinP1I GCGC 2 cut(s) 840, 920
HindIII AAGCTT 2 cut(s) 293, 908
HinfI GANTC 9 cut(s) 146, 229, 340, 419, 715, 764, 890, 926, 1135
HpaII CCGG 5 cut(s) 128, 344, 510, 585, 1197
HphI GGTGA 4 cut(s) 414, 821, 1064, 1144
Hpy166II GTNNAC 4 cut(s) 333, 396, 493, 1100
Hpy188I TCNGA 3 cut(s) 145, 157, 1075
Hpy188III TCNNGA 6 cut(s) 58, 344, 442, 666, 785, 1139
Hpy8I GTNNAC 4 cut(s) 333, 396, 493, 1100
HpyCH4IV ACGT 4 cut(s) 469, 897, 963, 1038
HpyCH4V TGCA 3 cut(s) 869, 967, 1021
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 1011
HpyF3I CTNAG 4 cut(s) 523, 766, 798, 1072
HpySE526I ACGT 4 cut(s) 469, 897, 963, 1038
Hsp92II CATG 5 cut(s) 311, 499, 557, 1085, 1155
HspAI GCGC 2 cut(s) 840, 920
Kpn2I TCCGGA 1 cut(s) 343
Kzo9I GATC 7 cut(s) 60, 157, 478, 685, 826, 993, 1057
LmnI GCTCC 3 cut(s) 112, 489, 499
Lsp1109I GCAGC 1 cut(s) 1018
LweI GCATC 4 cut(s) 229, 418, 659, 1008
MaeI CTAG 2 cut(s) 503, 692
MaeII ACGT 4 cut(s) 469, 897, 963, 1038
MaeIII GTNAC 2 cut(s) 846, 898
MalI GATC 7 cut(s) 62, 159, 480, 687, 828, 995, 1059
MbiI CCGCTC 2 cut(s) 32, 484
MboI GATC 7 cut(s) 60, 157, 478, 685, 826, 993, 1057
MboII GAAGA 6 cut(s) 525, 545, 651, 1178, 1191, 1201
MflI RGATCY 2 cut(s) 157, 478
MhlI GDGCHC 2 cut(s) 217, 804
MluCI AATT 7 cut(s) 86, 137, 278, 349, 358, 857, 1007
MlyI GAGTC 4 cut(s) 758, 899, 920, 1144
MmeI TCCRAC 1 cut(s) 454
MroI TCCGGA 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 911
MseI TTAA 4 cut(s) 297, 312, 324, 744
MslI CAYNNNNRTG 2 cut(s) 237, 1150
MspA1I CMGCKG 1 cut(s) 884
MspCI CTTAAG 1 cut(s) 296
MspI CCGG 5 cut(s) 128, 344, 510, 585, 1197
MspR9I CCNGG 1 cut(s) 128
Mva1269I GAATGC 2 cut(s) 115, 985
MwoI GCNNNNNNNGC 2 cut(s) 29, 1011
NciI CCSGG 1 cut(s) 128
NdeII GATC 7 cut(s) 60, 157, 478, 685, 826, 993, 1057
NlaIII CATG 5 cut(s) 311, 499, 557, 1085, 1155
NlaIV GGNNCC 3 cut(s) 132, 159, 955
NmuCI GTSAC 2 cut(s) 846, 898
NspI RCATGY 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 526
PctI GAATGC 2 cut(s) 115, 985
PdmI GAANNNNTTC 1 cut(s) 911
PfeI GAWTC 5 cut(s) 146, 229, 340, 419, 715
Pfl23II CGTACG 1 cut(s) 1035
PflFI GACNNNGTC 2 cut(s) 566, 974
PkrI GCNGC 3 cut(s) 31, 1033, 1047
PleI GAGTC 4 cut(s) 758, 898, 920, 1143
PpsI GAGTC 4 cut(s) 758, 898, 920, 1143
Ppu21I YACGTR 2 cut(s) 898, 1039
PsiI TTATAA 1 cut(s) 186
PspLI CGTACG 1 cut(s) 1035
PspN4I GGNNCC 3 cut(s) 132, 159, 955
PspPI GGNCC 1 cut(s) 954
PsrI GAACNNNNNNTAC 2 cut(s) 244, 276
PsuI RGATCY 2 cut(s) 157, 478
PsyI GACNNNGTC 2 cut(s) 566, 974
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 4 cut(s) 494, 824, 1037, 1079
RsaNI GTAC 4 cut(s) 493, 823, 1036, 1078
RseI CAYNNNNRTG 2 cut(s) 237, 1150
SaqAI TTAA 4 cut(s) 297, 312, 324, 744
SatI GCNGC 3 cut(s) 30, 1032, 1046
Sau3AI GATC 7 cut(s) 60, 157, 478, 685, 826, 993, 1057
Sau96I GGNCC 1 cut(s) 954
SchI GAGTC 4 cut(s) 758, 899, 920, 1144
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 2 cut(s) 217, 804
SfaNI GCATC 4 cut(s) 229, 418, 659, 1008
SfcI CTRYAG 1 cut(s) 461
SmiMI CAYNNNNRTG 2 cut(s) 237, 1150
SmlI CTYRAG 2 cut(s) 296, 664
SmoI CTYRAG 2 cut(s) 296, 664
Sse9I AATT 7 cut(s) 86, 137, 278, 349, 358, 857, 1007
SsiI CCGC 6 cut(s) 30, 482, 983, 1045, 1093, 1130
SspMI CTAG 2 cut(s) 503, 692
StyD4I CCNGG 1 cut(s) 126
TaiI ACGT 4 cut(s) 472, 900, 966, 1041
TaqI TCGA 8 cut(s) 107, 441, 708, 873, 924, 996, 1016, 1140
TaqII GACCGA 1 cut(s) 917
TasI AATT 7 cut(s) 86, 137, 278, 349, 358, 857, 1007
TatI WGTACW 1 cut(s) 492
TauI GCSGC 2 cut(s) 32, 1048
TfiI GAWTC 5 cut(s) 146, 229, 340, 419, 715
Tru1I TTAA 4 cut(s) 297, 312, 324, 744
Tru9I TTAA 4 cut(s) 297, 312, 324, 744
TscAI CASTG 2 cut(s) 172, 842
TseFI GTSAC 2 cut(s) 846, 898
TseI GCWGC 1 cut(s) 1031
Tsp45I GTSAC 2 cut(s) 846, 898
TspDTI ATGAA 3 cut(s) 317, 532, 587
TspGWI ACGGA 2 cut(s) 476, 979
TspRI CASTG 2 cut(s) 172, 842
Tth111I GACNNNGTC 2 cut(s) 566, 974
Vha464I CTTAAG 1 cut(s) 296
XapI RAATTY 5 cut(s) 86, 278, 358, 857, 1007
XceI RCATGY 1 cut(s) 311
XcmI CCANNNNNNNNNTGG 1 cut(s) 728
XmnI GAANNNNTTC 1 cut(s) 911
XspI CTAG 2 cut(s) 503, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.