Rh7BG371400

Glycosyltransferase family 10 (fucosyltransferase) C-term

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0014607
Physical Location & Seq
Forward (+)
39904481 .. 39910977
6497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG371400.1

Sequence Viewer

Length: 1227 bp
ATGCCATTGAAGCCCTTCAACTCCTGCAGCATCGCCTTCATGTTGGGTGGCGCATTCCTCATCCTCTTCCTCTGTAGCTTCCTCGAATTCCCTTCTCTCTCAACCTCAATTCACCAACCCCCGATCGACGACCCCACTCTCTCTCTCACCCACTCCGCCCCTGACCCATTCACCAATCTCATCTCTTCCTTCAGAAAATGGGACTCTCAGGTGGGTTGTGCTCGGTTCACAGAAAAGCACAAGTCTTTGGTCCAAAATGGGTCTTCTTCTTCTTCTTCTCTGCAGCAACCATCTGAGTGTGGGAAGAAGAAGCCGCAGATGGAGCATGTCAGCGTTTTGGTCAAAGGGTGGACTTGGATTCCTGATAATCTGGACAATTTGTATTCGTGCTCATGTGGGTTGAGCTGTTTGTGGACTAAATCGTCTGTTCTGGCTGACAAACCTGATGCCTTGTTGTTTGAGACGACCACCCCTCCGCTTCAGAGACGCCATGGAGATCCACTTCGTGTGTACATGGATCTTGAGGCTGGCAGGAAGCGATCTGGTGTTGAGGACTTGTATGTTAGTTATCATGCCAAAGACGATGTGCAGGCTACCTATGCTGGTGCACTCTTTCACAATGGTCGGAATTATCATGTATCCTCTTACAAAAACAATGATACACTTATCTATTGGTCATCCTCACGTTGTCTGCCTCAAAGAAATAAGCTTGCCAAGAGGCTTCTCAGCTTACTACCATCCCATTCATTCGGCAAGTGCTTGAATAATGTCGGTGGTTTGGACATGGCCCTTTCTTTCTACCCCGAGTGTGCCAATGGTGCTGGTGATGGCCCCCAAAAATGGTGGGACCATTTACACTGTGCCATGTCTCACTATAAGTTTGTTCTAGCTATTGAAAACACAATGACAGAGAGTTATGTGACAGAGAAGCTGTTCTATGCTCTAGATTCTGGTGCAGTTCCTATCTATTTTGGTGCCCCTAATGTTTGGGACTTTGTCCCTCCCCATTCTATAATAGATGGCAGTAAATTCAGCAACCTGGAGGATTTGGCTTCTTATGTAAAGGCCCTTGCCAATGACCCAGTTGCTTATGCTGAGTACCATGCATGGAGAAGATGTGGCTTATTCGGCAACTATGTAAAAACTCGTGCATTGAGCCTTGATACATTGCCTTGCAGACTCTGTGAGGTAGTTGGGAGAAAAGGTGGGAGATATGCAAGAGGGTAG

Protein Analysis

408

Amino Acids

45.51

Weight (kDa)

8.3

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_10 PF00852 219 - 401 5e-29 Glycosyltransferase family 10 (fucosyltransferase) C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014607)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71990
fragaria_vesca FvH4_5g31230
malus_domestica MD08G1220600.v1.1 MD15G1411300.v1.1
prunus_persica Prupe.1G557500_v2.0.a1
pyrus_communis pycom08g19140
rosa_chinensis RchiOBHm_Chr7g0226481
rosa_laevigata RLG00000001727
rosa_multiflora Rmu_sc0001423.1_g000068 Rmu_sc0001470.1_g000012
rosa_roxburghii Rroxscaffold_3G00232800
rosa_rugosa Rorug07G0237400
rosa_samantha Rh7AG384600 Rh7BG371400 Rh7CG403900 Rh7DG383500
rosa_wichuraiana Rw7G032300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 421
AccB1I GGYRCC 1 cut(s) 974
AciI CCGC 3 cut(s) 156, 314, 476
AclWI GGATC 2 cut(s) 491, 525
AcsI RAATTY 2 cut(s) 86, 1028
AcuI CTGAAG 2 cut(s) 175, 464
AcyI GRCGYC 1 cut(s) 487
AdeI CACNNNGTG 1 cut(s) 506
AfaI GTAC 2 cut(s) 512, 1100
AfiI CCNNNNNNNGG 1 cut(s) 840
AgsI TTSAA 4 cut(s) 10, 19, 763, 896
AjnI CCWGG 1 cut(s) 1038
AluBI AGCT 6 cut(s) 78, 405, 709, 729, 890, 931
AluI AGCT 6 cut(s) 78, 405, 709, 729, 890, 931
Alw21I GWGCWC 3 cut(s) 223, 392, 610
Alw26I GTCTC 3 cut(s) 455, 478, 873
Alw44I GTGCAC 1 cut(s) 606
AlwI GGATC 2 cut(s) 491, 525
AlwNI CAGNNNCTG 1 cut(s) 1182
Ama87I CYCGRG 1 cut(s) 803
AoxI GGCC 3 cut(s) 786, 829, 1065
ApaLI GTGCAC 1 cut(s) 606
ApeKI GCWGC 2 cut(s) 27, 283
ApoI RAATTY 2 cut(s) 86, 1028
Asp700I GAANNNNTTC 2 cut(s) 14, 932
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 5 cut(s) 250, 787, 830, 847, 1066
AsuHPI GGTGA 4 cut(s) 104, 139, 163, 836
AvaI CYCGRG 1 cut(s) 803
AvaII GGWCC 2 cut(s) 250, 847
BaeGI GKGCMC 2 cut(s) 610, 979
BanI GGYRCC 1 cut(s) 974
BauI CACGAG 1 cut(s) 1146
BbsI GAAGAC 1 cut(s) 255
Bbv12I GWGCWC 3 cut(s) 223, 392, 610
BbvI GCAGC 2 cut(s) 39, 295
BccI CCATC 5 cut(s) 298, 313, 745, 821, 1013
BciT130I CCWGG 1 cut(s) 1040
BciVI GTATCC 1 cut(s) 649
BcoDI GTCTC 3 cut(s) 455, 478, 873
BfaI CTAG 2 cut(s) 887, 944
BfmI CTRYAG 3 cut(s) 25, 73, 281
BfuI GTATCC 1 cut(s) 649
BisI GCNGC 3 cut(s) 28, 284, 314
BlsI GCNGC 3 cut(s) 29, 285, 315
Bme1390I CCNGG 1 cut(s) 1040
Bme18I GGWCC 2 cut(s) 250, 847
BmeT110I CYCGRG 1 cut(s) 803
BmgT120I GGNCC 5 cut(s) 250, 787, 830, 847, 1066
BmiI GGNNCC 3 cut(s) 832, 848, 976
BmrFI CCNGG 1 cut(s) 1040
BmrI ACTGGG 1 cut(s) 1076
BmsI GCATC 2 cut(s) 39, 436
BmuI ACTGGG 1 cut(s) 1076
BpiI GAAGAC 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 1061
BpuEI CTTGAG 1 cut(s) 542
BsaHI GRCGYC 1 cut(s) 487
BsaJI CCNNGG 1 cut(s) 490
BsaXI ACNNNNNCTCC 6 cut(s) 457, 487, 1102, 1132, 1189, 1219
Bsc4I CCNNNNNNNGG 1 cut(s) 840
Bse1I ACTGG 1 cut(s) 1082
Bse3DI GCAATG 1 cut(s) 1166
BseBI CCWGG 1 cut(s) 1040
BseDI CCNNGG 1 cut(s) 490
BseGI GGATG 3 cut(s) 60, 677, 737
BseLI CCNNNNNNNGG 1 cut(s) 840
BseMI GCAATG 1 cut(s) 1166
BseMII CTCAG 4 cut(s) 221, 285, 739, 1086
BseNI ACTGG 1 cut(s) 1082
BseSI GKGCMC 2 cut(s) 610, 979
BseXI GCAGC 2 cut(s) 39, 295
BsgI GTGCAG 2 cut(s) 608, 975
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 3 cut(s) 788, 831, 1067
BshNI GGYRCC 1 cut(s) 974
BsiEI CGRYCG 1 cut(s) 126
BsiHKAI GWGCWC 3 cut(s) 223, 392, 610
BsiHKCI CYCGRG 1 cut(s) 803
BslFI GGGAC 4 cut(s) 215, 860, 983, 1004
BslI CCNNNNNNNGG 1 cut(s) 840
BsmAI GTCTC 3 cut(s) 455, 478, 873
BsmBI CGTCTC 2 cut(s) 455, 478
BsmFI GGGAC 4 cut(s) 215, 860, 983, 1004
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 3 cut(s) 788, 831, 1067
BsoBI CYCGRG 1 cut(s) 803
Bsp1286I GDGCHC 4 cut(s) 223, 392, 610, 979
Bsp1407I TGTACA 1 cut(s) 510
Bsp143I GATC 4 cut(s) 123, 496, 517, 539
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 3 cut(s) 156, 314, 476
BspANI GGCC 3 cut(s) 788, 831, 1067
BspCNI CTCAG 4 cut(s) 220, 286, 738, 1087
BspLI GGNNCC 3 cut(s) 832, 848, 976
BspMAI CTGCAG 2 cut(s) 29, 285
BspPI GGATC 2 cut(s) 491, 525
BspT107I GGYRCC 1 cut(s) 974
BsrDI GCAATG 1 cut(s) 1166
BsrGI TGTACA 1 cut(s) 510
BsrI ACTGG 1 cut(s) 1082
BssECI CCNNGG 1 cut(s) 490
BssMI GATC 4 cut(s) 123, 496, 517, 539
BssNI GRCGYC 1 cut(s) 487
BssSI CACGAG 1 cut(s) 1146
BssT1I CCWWGG 1 cut(s) 490
Bst2BI CACGAG 1 cut(s) 1146
Bst2UI CCWGG 1 cut(s) 1040
Bst4CI ACNGT 1 cut(s) 860
Bst6I CTCTTC 2 cut(s) 71, 190
BstACI GRCGYC 1 cut(s) 487
BstAUI TGTACA 1 cut(s) 510
BstC8I GCNNGC 3 cut(s) 529, 591, 711
BstDEI CTNAG 4 cut(s) 207, 294, 725, 1095
BstDSI CCRYGG 1 cut(s) 490
BstF5I GGATG 3 cut(s) 60, 677, 737
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 4 cut(s) 126, 499, 520, 542
BstMAI GTCTC 3 cut(s) 455, 478, 873
BstMBI GATC 4 cut(s) 123, 496, 517, 539
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 5 cut(s) 10, 322, 599, 818, 1128
BstNI CCWGG 1 cut(s) 1040
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 1038
BstSFI CTRYAG 3 cut(s) 25, 73, 281
BstSLI GKGCMC 2 cut(s) 610, 979
BstV1I GCAGC 2 cut(s) 39, 295
BstV2I GAAGAC 1 cut(s) 255
BstX2I RGATCY 2 cut(s) 496, 517
BstYI RGATCY 2 cut(s) 496, 517
BsuI GTATCC 1 cut(s) 649
BsuRI GGCC 3 cut(s) 788, 831, 1067
BtgI CCRYGG 1 cut(s) 490
BtgZI GCGATG 1 cut(s) 16
BtsCI GGATG 3 cut(s) 60, 677, 737
BtsIMutI CAGTG 1 cut(s) 856
Cac8I GCNNGC 3 cut(s) 529, 591, 711
CaiI CAGNNNCTG 1 cut(s) 1182
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 5 cut(s) 250, 787, 830, 847, 1066
CseI GACGC 1 cut(s) 495
Csp6I GTAC 2 cut(s) 511, 1099
CspCI CAANNNNNGTGG 2 cut(s) 824, 859
CviQI GTAC 2 cut(s) 511, 1099
DdeI CTNAG 4 cut(s) 207, 294, 725, 1095
DpnI GATC 4 cut(s) 125, 498, 519, 541
DpnII GATC 4 cut(s) 123, 496, 517, 539
DraIII CACNNNGTG 1 cut(s) 506
DrdI GACNNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 71, 190
EarI CTCTTC 2 cut(s) 71, 190
EciI GGCGGA 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 490
Eco47I GGWCC 2 cut(s) 250, 847
Eco57I CTGAAG 2 cut(s) 175, 464
Eco88I CYCGRG 1 cut(s) 803
EcoO109I RGGNCCY 1 cut(s) 1066
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 1038
EcoT14I CCWWGG 1 cut(s) 490
EcoT22I ATGCAT 1 cut(s) 1108
ErhI CCWWGG 1 cut(s) 490
Esp3I CGTCTC 2 cut(s) 455, 478
FaqI GGGAC 4 cut(s) 215, 860, 983, 1004
Fnu4HI GCNGC 3 cut(s) 28, 284, 314
FokI GGATG 3 cut(s) 47, 664, 724
Fsp4HI GCNGC 3 cut(s) 28, 284, 314
FspBI CTAG 2 cut(s) 887, 944
GlaI GCGC 1 cut(s) 52
GluI GCNGC 3 cut(s) 28, 284, 314
GsuI CTGGAG 1 cut(s) 1061
HaeIII GGCC 3 cut(s) 788, 831, 1067
HgaI GACGC 1 cut(s) 495
HhaI GCGC 1 cut(s) 53
Hin1I GRCGYC 1 cut(s) 487
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 4 cut(s) 203, 358, 947, 1179
HphI GGTGA 4 cut(s) 104, 139, 163, 836
Hpy166II GTNNAC 5 cut(s) 228, 351, 414, 511, 608
Hpy188I TCNGA 4 cut(s) 194, 295, 483, 627
Hpy188III TCNNGA 4 cut(s) 362, 371, 521, 944
Hpy8I GTNNAC 5 cut(s) 228, 351, 414, 511, 608
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 4 cut(s) 25, 46, 102, 199
HpyCH4III ACNGT 1 cut(s) 860
HpyCH4IV ACGT 1 cut(s) 685
HpyCH4V TGCA 9 cut(s) 27, 283, 589, 608, 956, 1106, 1151, 1176, 1217
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 322, 599, 818, 1128
HpyF3I CTNAG 4 cut(s) 207, 294, 725, 1095
HpySE526I ACGT 1 cut(s) 685
Hsp92I GRCGYC 1 cut(s) 487
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 4 cut(s) 123, 496, 517, 539
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 2 cut(s) 39, 295
LweI GCATC 2 cut(s) 39, 436
MaeI CTAG 2 cut(s) 887, 944
MaeII ACGT 1 cut(s) 685
MaeIII GTNAC 1 cut(s) 919
MalI GATC 4 cut(s) 125, 498, 519, 541
MboI GATC 4 cut(s) 123, 496, 517, 539
MflI RGATCY 2 cut(s) 496, 517
MhlI GDGCHC 4 cut(s) 223, 392, 610, 979
MluCI AATT 5 cut(s) 86, 108, 376, 628, 1028
MlyI GAGTC 2 cut(s) 197, 1173
MmeI TCCRAC 1 cut(s) 605
Mph1103I ATGCAT 1 cut(s) 1108
MroXI GAANNNNTTC 2 cut(s) 14, 932
MslI CAYNNNNRTG 1 cut(s) 295
MspR9I CCNGG 1 cut(s) 1040
Mva1269I GAATGC 1 cut(s) 53
MvaI CCWGG 1 cut(s) 1040
MwoI GCNNNNNNNGC 5 cut(s) 10, 322, 599, 818, 1128
NcoI CCATGG 1 cut(s) 490
NdeII GATC 4 cut(s) 123, 496, 517, 539
NlaIV GGNNCC 3 cut(s) 832, 848, 976
NmuCI GTSAC 1 cut(s) 919
NsiI ATGCAT 1 cut(s) 1108
NspI RCATGY 1 cut(s) 329
PctI GAATGC 1 cut(s) 53
PdmI GAANNNNTTC 2 cut(s) 14, 932
PfeI GAWTC 2 cut(s) 358, 947
PflFI GACNNNGTC 1 cut(s) 995
PkrI GCNGC 3 cut(s) 29, 285, 315
Ple19I CGATCG 1 cut(s) 126
PleI GAGTC 2 cut(s) 197, 1173
PpsI GAGTC 2 cut(s) 197, 1173
Psp6I CCWGG 1 cut(s) 1038
PspGI CCWGG 1 cut(s) 1038
PspN4I GGNNCC 3 cut(s) 832, 848, 976
PspPI GGNCC 5 cut(s) 250, 787, 830, 847, 1066
PstI CTGCAG 2 cut(s) 29, 285
PstNI CAGNNNCTG 1 cut(s) 1182
PsuI RGATCY 2 cut(s) 496, 517
PsyI GACNNNGTC 1 cut(s) 995
PvuI CGATCG 1 cut(s) 126
RsaI GTAC 2 cut(s) 512, 1100
RsaNI GTAC 2 cut(s) 511, 1099
RseI CAYNNNNRTG 1 cut(s) 295
SatI GCNGC 3 cut(s) 28, 284, 314
Sau3AI GATC 4 cut(s) 123, 496, 517, 539
Sau96I GGNCC 5 cut(s) 250, 787, 830, 847, 1066
SchI GAGTC 2 cut(s) 197, 1173
ScrFI CCNGG 1 cut(s) 1040
SduI GDGCHC 4 cut(s) 223, 392, 610, 979
SfaNI GCATC 2 cut(s) 39, 436
SfcI CTRYAG 3 cut(s) 25, 73, 281
SinI GGWCC 2 cut(s) 250, 847
SmiMI CAYNNNNRTG 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
Sse9I AATT 5 cut(s) 86, 108, 376, 628, 1028
SsiI CCGC 3 cut(s) 156, 314, 476
SspMI CTAG 2 cut(s) 887, 944
StyD4I CCNGG 1 cut(s) 1038
StyI CCWWGG 1 cut(s) 490
TaaI ACNGT 1 cut(s) 860
TaiI ACGT 1 cut(s) 688
TaqI TCGA 2 cut(s) 84, 126
TasI AATT 5 cut(s) 86, 108, 376, 628, 1028
TatI WGTACW 1 cut(s) 510
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 2 cut(s) 358, 947
TscAI CASTG 1 cut(s) 863
TseFI GTSAC 1 cut(s) 919
TseI GCWGC 2 cut(s) 27, 283
Tsp45I GTSAC 1 cut(s) 919
TspDTI ATGAA 2 cut(s) 28, 735
TspRI CASTG 1 cut(s) 863
Tth111I GACNNNGTC 1 cut(s) 995
VneI GTGCAC 1 cut(s) 606
VpaK11BI GGWCC 2 cut(s) 250, 847
XapI RAATTY 2 cut(s) 86, 1028
XbaI TCTAGA 1 cut(s) 943
XceI RCATGY 1 cut(s) 329
XmnI GAANNNNTTC 2 cut(s) 14, 932
XspI CTAG 2 cut(s) 887, 944
Zsp2I ATGCAT 1 cut(s) 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.