Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014607

Physical Location & Seq

Genomic Coordinates Reverse (-)

45526046 .. 45531248

Gene Structure 5203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G557500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGCAATTGAAGCCCTTCAACTCCTTGAGCATCGCGTTCATGATGGGTGGCGCATTCTTGATCCTTTTCCTCTGTAGCTTCCTCGAATTCCCTTCTATATCAACCTCAATCCAACCCATGAAAGATCCCAATCTCTCTCTATCTCTAACCAAGTCCACGCCTGACCCATTTACCAATTTGATCAGTGCCTTCAAGAAATGGGACTCTCAAGTGGGTTGTGCCCATTTCAGAGGCAAGCATCATGAGGCGTTACTTCAAAGCCAAAATCAAAATGGTTCTTCTTCTTCTCTGCAACAAGTTCAACTTGGCATTGAATCTGAGTGTAGGGAGCCCAAGGTTGAGCATATCAGCGTCATGGTCAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTATTCGTGCCCCTGTGGGTTGAGCTGTTTGTGGACTAAATCTTCCGTTCTTGCTGACAAACCTGATGCCTTATTGTTTGAGACTACTACGCCTCCGCTTCAGAGAAACACTGGAGATCCACTTCGTGCATACATGGATCTTGAGGCTGGCAGGAAGAAATCTGGCTTTGAGGATCTATTTATTAGTTATCATGCCAAAGATGATGTGCAGTGCACCTATGCTGGTGCACTCTTTCACAATGGTCGGAATTATCACGTGTCTTCATATAAGCACAATGATACACTTGTTTATTGGTCATCATCGCGTTGTCTGCCTCAAAGAAATAAGCTTGCCTATAAGCTTCTCAGCTTACTACCTCATCATTCGTTTGGAAAGTGCTTGAACAATGTTGGTGGCTTGGACATGGCCCTTTCGTTCTACCCTGAGTGTGCCAGTGATGCTAGTGTCAGTCAGAAATGGTGGGACCATTTACATTGTGCTATGTCTCACTATAAGTTTGTTTTAGCTATTGAAAACACAATGACAGAGAGTTATGTGACGGAGAAGCTATTTTATGCTCTAGATTCTGGTGCAGTTCCTATCTATTTTGGTGCCCCTAATGTCTGGGACTTCGTCCCTCCTCATTCAATAATCGACGGCACTAAATTTAGCAAGTTGGAGGAATTGGCTTCTTATGTGAAAGCCCTCGCCAATGACCCAGTTGCCTATGCCGAGTACCATGGATGGAGAAGATGCGGCGTGATGGCGAATTATGTAAAAACCCGTGCATTGAGCCTTGACACATTACCATGCAGACTCTGTGAAGCTGTTAGCAGAAAAGGTGGGAGAAATGCAAGAGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009987 GO:0010493 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046920 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_10

Protein Analysis

415

Amino Acids

46.42

Weight (kDa)

8.12

Isoelectric Point (pI)

43.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71990
fragaria_vesca	FvH4_5g31230
malus_domestica	MD08G1220600.v1.1 MD15G1411300.v1.1
prunus_persica	Prupe.1G557500_v2.0.a1
pyrus_communis	pycom08g19140
rosa_chinensis	RchiOBHm_Chr7g0226481
rosa_laevigata	RLG00000001727
rosa_multiflora	Rmu_sc0001423.1_g000068 Rmu_sc0001470.1_g000012
rosa_roxburghii	Rroxscaffold_3G00232800
rosa_rugosa	Rorug07G0237400
rosa_samantha	Rh7AG384600 Rh7BG371400 Rh7CG403900 Rh7DG383500
rosa_wichuraiana	Rw7G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	989
AccII	CGCG	2 cut(s)	35, 703
AciI	CCGC	2 cut(s)	494, 1134
AclWI	GGATC	5 cut(s)	55, 119, 509, 543, 579
AcsI	RAATTY	2 cut(s)	86, 1043
AcuI	CTGAAG	1 cut(s)	482
AcvI	CACGTG	1 cut(s)	655
AdeI	CACNNNGTG	1 cut(s)	524
AfaI	GTAC	1 cut(s)	1115
AflIII	ACRYGT	1 cut(s)	654
AgsI	TTSAA	9 cut(s)	10, 19, 193, 257, 302, 314, 781, 911, 1026
AluBI	AGCT	8 cut(s)	78, 423, 727, 739, 747, 905, 946, 1205
AluI	AGCT	8 cut(s)	78, 423, 727, 739, 747, 905, 946, 1205
Alw21I	GWGCWC	2 cut(s)	614, 628
Alw26I	GTCTC	2 cut(s)	473, 888
Alw44I	GTGCAC	2 cut(s)	610, 624
AlwI	GGATC	5 cut(s)	55, 119, 509, 543, 579
AlwNI	CAGNNNCTG	1 cut(s)	1197
AoxI	GGCC	1 cut(s)	804
ApaLI	GTGCAC	2 cut(s)	610, 624
ApoI	RAATTY	2 cut(s)	86, 1043
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	2 cut(s)	805, 862
AvaII	GGWCC	1 cut(s)	862
BaeGI	GKGCMC	5 cut(s)	223, 410, 614, 628, 994
BaeI	ACNNNNGTAYC	2 cut(s)	669, 702
BanI	GGYRCC	1 cut(s)	989
BanII	GRGCYC	1 cut(s)	333
BbrPI	CACGTG	1 cut(s)	655
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	2 cut(s)	614, 628
BccI	CCATC	3 cut(s)	37, 1116, 1135
BceAI	ACGGC	1 cut(s)	1051
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	473, 888
BfaI	CTAG	2 cut(s)	840, 959
BfmI	CTRYAG	1 cut(s)	73
BisI	GCNGC	1 cut(s)	1135
BlsI	GCNGC	1 cut(s)	1136
Bme18I	GGWCC	1 cut(s)	862
BmgT120I	GGNCC	2 cut(s)	805, 862
BmiI	GGNNCC	3 cut(s)	330, 863, 991
BmrI	ACTGGG	1 cut(s)	1091
BmsI	GCATC	5 cut(s)	39, 247, 454, 826, 1121
BmuI	ACTGGG	1 cut(s)	1091
BpiI	GAAGAC	1 cut(s)	651
BpmI	CTGGAG	1 cut(s)	531
BpuEI	CTTGAG	3 cut(s)	46, 192, 560
BsaAI	YACGTR	1 cut(s)	655
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	333, 1117
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bse1I	ACTGG	3 cut(s)	514, 831, 1097
Bse8I	GATNNNNATC	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	333, 1117
BseGI	GGATG	1 cut(s)	1127
BseJI	GATNNNNATC	1 cut(s)	129
BseMII	CTCAG	3 cut(s)	309, 757, 813
BseNI	ACTGG	3 cut(s)	514, 831, 1097
BseRI	GAGGAG	1 cut(s)	1008
BseSI	GKGCMC	5 cut(s)	223, 410, 614, 628, 994
BsgI	GTGCAG	2 cut(s)	626, 990
Bsh1236I	CGCG	2 cut(s)	35, 703
BshFI	GGCC	1 cut(s)	806
BshNI	GGYRCC	1 cut(s)	989
BsiHKAI	GWGCWC	2 cut(s)	614, 628
BslFI	GGGAC	4 cut(s)	215, 875, 998, 1019
BsmAI	GTCTC	2 cut(s)	473, 888
BsmFI	GGGAC	4 cut(s)	215, 875, 998, 1019
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	806
Bsp1286I	GDGCHC	6 cut(s)	223, 333, 410, 614, 628, 994
Bsp143I	GATC	6 cut(s)	60, 124, 180, 514, 535, 571
Bsp19I	CCATGG	1 cut(s)	1117
BspACI	CCGC	2 cut(s)	494, 1134
BspANI	GGCC	1 cut(s)	806
BspCNI	CTCAG	3 cut(s)	310, 756, 814
BspFNI	CGCG	2 cut(s)	35, 703
BspHI	TCATGA	2 cut(s)	39, 241
BspLI	GGNNCC	3 cut(s)	330, 863, 991
BspPI	GGATC	5 cut(s)	55, 119, 509, 543, 579
BspT107I	GGYRCC	1 cut(s)	989
BsrI	ACTGG	3 cut(s)	514, 831, 1097
BssECI	CCNNGG	2 cut(s)	333, 1117
BssMI	GATC	6 cut(s)	60, 124, 180, 514, 535, 571
BssT1I	CCWWGG	2 cut(s)	333, 1117
BstBAI	YACGTR	1 cut(s)	655
BstC8I	GCNNGC	3 cut(s)	236, 547, 729
BstDEI	CTNAG	3 cut(s)	318, 743, 822
BstDSI	CCRYGG	1 cut(s)	1117
BstF5I	GGATG	1 cut(s)	1127
BstFNI	CGCG	2 cut(s)	35, 703
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	6 cut(s)	63, 127, 183, 517, 538, 574
BstMAI	GTCTC	2 cut(s)	473, 888
BstMBI	GATC	6 cut(s)	60, 124, 180, 514, 535, 571
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 709, 836
BstSFI	CTRYAG	1 cut(s)	73
BstSLI	GKGCMC	5 cut(s)	223, 410, 614, 628, 994
BstUI	CGCG	2 cut(s)	35, 703
BstV2I	GAAGAC	1 cut(s)	651
BstX2I	RGATCY	4 cut(s)	124, 514, 535, 571
BstYI	RGATCY	4 cut(s)	124, 514, 535, 571
BsuRI	GGCC	1 cut(s)	806
BtgI	CCRYGG	1 cut(s)	1117
BtgZI	GCGATG	2 cut(s)	16, 684
BtsCI	GGATG	1 cut(s)	1127
BtsI	GCAGTG	1 cut(s)	614
BtsIMutI	CAGTG	4 cut(s)	190, 507, 614, 838
Cac8I	GCNNGC	3 cut(s)	236, 547, 729
CaiI	CAGNNNCTG	1 cut(s)	1197
CciI	TCATGA	2 cut(s)	39, 241
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	805, 862
CseI	GACGC	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	1114
CspCI	CAANNNNNGTGG	2 cut(s)	772, 807
CviAII	CATG	9 cut(s)	40, 118, 242, 355, 532, 590, 802, 1118, 1188
CviQI	GTAC	1 cut(s)	1114
DdeI	CTNAG	3 cut(s)	318, 743, 822
DpnI	GATC	6 cut(s)	62, 126, 182, 516, 537, 573
DpnII	GATC	6 cut(s)	60, 124, 180, 514, 535, 571
DraIII	CACNNNGTG	1 cut(s)	524
Eco130I	CCWWGG	2 cut(s)	333, 1117
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	862
Eco57I	CTGAAG	1 cut(s)	482
Eco72I	CACGTG	1 cut(s)	655
EcoRI	GAATTC	1 cut(s)	86
EcoT14I	CCWWGG	2 cut(s)	333, 1117
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	2 cut(s)	333, 1117
FaeI	CATG	9 cut(s)	43, 121, 245, 358, 535, 593, 805, 1121, 1191
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	4 cut(s)	215, 875, 998, 1019
FatI	CATG	9 cut(s)	39, 117, 241, 354, 531, 589, 801, 1117, 1187
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	1135
FokI	GGATG	1 cut(s)	1134
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	1135
FspBI	CTAG	2 cut(s)	840, 959
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	1135
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	806
HgaI	GACGC	1 cut(s)	340
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	9 cut(s)	43, 121, 245, 358, 535, 593, 805, 1121, 1191
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HindIII	AAGCTT	2 cut(s)	725, 737
HinfI	GANTC	5 cut(s)	203, 314, 376, 962, 1194
Hpy166II	GTNNAC	5 cut(s)	156, 369, 432, 612, 626
Hpy188I	TCNGA	5 cut(s)	230, 319, 501, 645, 852
Hpy188III	TCNNGA	7 cut(s)	40, 58, 193, 242, 380, 539, 959
Hpy8I	GTNNAC	5 cut(s)	156, 369, 432, 612, 626
Hpy99I	CGWCG	1 cut(s)	1037
HpyAV	CCTTC	3 cut(s)	25, 102, 199
HpyCH4IV	ACGT	1 cut(s)	654
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 709, 836
HpyF3I	CTNAG	3 cut(s)	318, 743, 822
HpySE526I	ACGT	1 cut(s)	654
Hsp92II	CATG	9 cut(s)	43, 121, 245, 358, 535, 593, 805, 1121, 1191
HspAI	GCGC	1 cut(s)	51
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	6 cut(s)	60, 124, 180, 514, 535, 571
LmnI	GCTCC	1 cut(s)	328
LweI	GCATC	5 cut(s)	39, 247, 454, 826, 1121
MaeI	CTAG	2 cut(s)	840, 959
MaeII	ACGT	1 cut(s)	654
MaeIII	GTNAC	2 cut(s)	249, 934
MalI	GATC	6 cut(s)	62, 126, 182, 516, 537, 573
MboI	GATC	6 cut(s)	60, 124, 180, 514, 535, 571
MboII	GAAGA	7 cut(s)	270, 273, 276, 432, 565, 651, 1140
MfeI	CAATTG	1 cut(s)	5
MflI	RGATCY	4 cut(s)	124, 514, 535, 571
MhlI	GDGCHC	6 cut(s)	223, 333, 410, 614, 628, 994
MluCI	AATT	9 cut(s)	5, 86, 175, 385, 394, 646, 1043, 1061, 1147
MlyI	GAGTC	2 cut(s)	197, 1188
MmeI	TCCRAC	3 cut(s)	136, 623, 1035
MroXI	GAANNNNTTC	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	1186
MunI	CAATTG	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	53
MvnI	CGCG	2 cut(s)	35, 703
MwoI	GCNNNNNNNGC	3 cut(s)	10, 709, 836
NcoI	CCATGG	1 cut(s)	1117
NdeII	GATC	6 cut(s)	60, 124, 180, 514, 535, 571
NlaIII	CATG	9 cut(s)	43, 121, 245, 358, 535, 593, 805, 1121, 1191
NlaIV	GGNNCC	3 cut(s)	330, 863, 991
NmeAIII	GCCGAG	1 cut(s)	1135
NmuCI	GTSAC	1 cut(s)	934
PagI	TCATGA	2 cut(s)	39, 241
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	314, 376, 962
PflFI	GACNNNGTC	1 cut(s)	1010
PkrI	GCNGC	1 cut(s)	1136
PleI	GAGTC	2 cut(s)	197, 1188
PmaCI	CACGTG	1 cut(s)	655
PmlI	CACGTG	1 cut(s)	655
PpsI	GAGTC	2 cut(s)	197, 1188
Ppu21I	YACGTR	1 cut(s)	655
PspCI	CACGTG	1 cut(s)	655
PspN4I	GGNNCC	3 cut(s)	330, 863, 991
PspPI	GGNCC	2 cut(s)	805, 862
PstNI	CAGNNNCTG	1 cut(s)	1197
PsuI	RGATCY	4 cut(s)	124, 514, 535, 571
PsyI	GACNNNGTC	1 cut(s)	1010
RsaI	GTAC	1 cut(s)	1115
RsaNI	GTAC	1 cut(s)	1114
RseI	CAYNNNNRTG	1 cut(s)	1186
SatI	GCNGC	1 cut(s)	1135
Sau3AI	GATC	6 cut(s)	60, 124, 180, 514, 535, 571
Sau96I	GGNCC	2 cut(s)	805, 862
SchI	GAGTC	2 cut(s)	197, 1188
SduI	GDGCHC	6 cut(s)	223, 333, 410, 614, 628, 994
SfaNI	GCATC	5 cut(s)	39, 247, 454, 826, 1121
SfcI	CTRYAG	1 cut(s)	73
SinI	GGWCC	1 cut(s)	862
SmiMI	CAYNNNNRTG	1 cut(s)	1186
SmlI	CTYRAG	3 cut(s)	25, 207, 539
SmoI	CTYRAG	3 cut(s)	25, 207, 539
Sse9I	AATT	9 cut(s)	5, 86, 175, 385, 394, 646, 1043, 1061, 1147
SsiI	CCGC	2 cut(s)	494, 1134
SspMI	CTAG	2 cut(s)	840, 959
StyI	CCWWGG	2 cut(s)	333, 1117
TaiI	ACGT	1 cut(s)	657
TaqI	TCGA	2 cut(s)	84, 1032
TasI	AATT	9 cut(s)	5, 86, 175, 385, 394, 646, 1043, 1061, 1147
TauI	GCSGC	1 cut(s)	1137
TfiI	GAWTC	3 cut(s)	314, 376, 962
TscAI	CASTG	4 cut(s)	190, 514, 614, 838
TseFI	GTSAC	1 cut(s)	934
Tsp45I	GTSAC	1 cut(s)	934
TspDTI	ATGAA	3 cut(s)	28, 134, 651
TspGWI	ACGGA	2 cut(s)	433, 953
TspRI	CASTG	4 cut(s)	190, 514, 614, 838
Tth111I	GACNNNGTC	1 cut(s)	1010
VneI	GTGCAC	2 cut(s)	610, 624
VpaK11BI	GGWCC	1 cut(s)	862
XapI	RAATTY	2 cut(s)	86, 1043
XbaI	TCTAGA	1 cut(s)	958
XcmI	CCANNNNNNNNNTGG	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	2 cut(s)	840, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.