Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001423.1

Orthogroup ID

OG0014607

Physical Location & Seq

Genomic Coordinates Reverse (-)

299018 .. 305514

Gene Structure 6497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001423.1_g000068.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atgccattgaagcccttcaactcctgcagcatcgccttcatgttgggtggcgcattcctcatcctcttcctctgtagcttcctcgaattcccttctctctccacctcaattcaccaacccccgatcgacgaccccactctctctctcacccactccgcccctgacccattcaccaatctcatctcttccttcagaaaatgggactctcaggtgggttgtgctcgtttcacagaaaagcacaagtctttggcccaaaatgggtcttcttcttgttcttctctgcagcagccatctgagtgtgggaagaagaagccgccgatggagcatgtcagcgttttggtcaaaggctggacttggattcctgataatctggacaatttgtattcctgctcatgtgggttgagctgtttgtggactaaatcgtctgttcttgctgacaaacctgatgccttgttgtttgagaccaccacccctccgcttcagagacgccatggagatccacttcgtgtgtacatggatcttgaggctggcaggaagcgatctggtgttgaggacttgtttgttagttatcatgccaaagacgatgtgcaggctacctatgctggtgccctctttcacaatggtcggaattatcacgtatcctcttacaaaaacaatgatacgcttatctattggtcatcctcacgttgtctgcctcaaagaaataagcttgccaagaggcttctcagcttactaccatcccattcattcggcaagtgcttgaataatgttggtggtttggacatggccctttctttctaccccgagtgtgccaatggtgctggtgatggcccccaaaaatggtgggaccatttacactgtgccatgtctcactataagtttgttctagcaattgaaaacacaatgacagagagttatgtgacagagaagctgttctatgctctagattctggtgcagttcctatctattttggtgcccctaatgtttgggactttgtccctccccattctataatagatggcagtaaattcagcaacctggaggatttggcttcttatgtaaaggcccttgccaatgacccagttgcttatgctgagtaccatgcatggagaagatgtggcttattgggcaactatgtaaaaactcgttcattgagccttgatacattgccttgcagactctgtgaggtagttgggagaaagggtgggagatatgcaagagagttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009987 GO:0010493 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046920 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_10

Protein Analysis

409

Amino Acids

45.62

Weight (kDa)

8.1

Isoelectric Point (pI)

51.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71990
fragaria_vesca	FvH4_5g31230
malus_domestica	MD08G1220600.v1.1 MD15G1411300.v1.1
prunus_persica	Prupe.1G557500_v2.0.a1
pyrus_communis	pycom08g19140
rosa_chinensis	RchiOBHm_Chr7g0226481
rosa_laevigata	RLG00000001727
rosa_multiflora	Rmu_sc0001423.1_g000068 Rmu_sc0001470.1_g000012
rosa_roxburghii	Rroxscaffold_3G00232800
rosa_rugosa	Rorug07G0237400
rosa_samantha	Rh7AG384600 Rh7BG371400 Rh7CG403900 Rh7DG383500
rosa_wichuraiana	Rw7G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	421
AccB1I	GGYRCC	2 cut(s)	605, 974
AciI	CCGC	3 cut(s)	156, 314, 476
AclWI	GGATC	2 cut(s)	491, 525
AcsI	RAATTY	2 cut(s)	86, 1028
AcuI	CTGAAG	2 cut(s)	175, 464
AcyI	GRCGYC	1 cut(s)	487
AdeI	CACNNNGTG	1 cut(s)	506
AfaI	GTAC	2 cut(s)	512, 1100
AfiI	CCNNNNNNNGG	2 cut(s)	258, 840
AgsI	TTSAA	4 cut(s)	10, 19, 763, 896
AjnI	CCWGG	1 cut(s)	1038
AluBI	AGCT	5 cut(s)	78, 405, 709, 729, 931
AluI	AGCT	5 cut(s)	78, 405, 709, 729, 931
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	3 cut(s)	455, 478, 873
AlwI	GGATC	2 cut(s)	491, 525
AlwNI	CAGNNNCTG	1 cut(s)	1182
Ama87I	CYCGRG	1 cut(s)	803
AoxI	GGCC	4 cut(s)	249, 786, 829, 1065
ApeKI	GCWGC	3 cut(s)	27, 283, 286
ApoI	RAATTY	2 cut(s)	86, 1028
Asp700I	GAANNNNTTC	2 cut(s)	14, 932
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	5 cut(s)	250, 787, 830, 847, 1066
AsuHPI	GGTGA	4 cut(s)	104, 139, 163, 836
AvaI	CYCGRG	1 cut(s)	803
AvaII	GGWCC	1 cut(s)	847
BaeGI	GKGCMC	2 cut(s)	610, 979
BanI	GGYRCC	2 cut(s)	605, 974
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	3 cut(s)	39, 295, 298
BccI	CCATC	5 cut(s)	298, 313, 745, 821, 1013
BciT130I	CCWGG	1 cut(s)	1040
BciVI	GTATCC	1 cut(s)	649
BcoDI	GTCTC	3 cut(s)	455, 478, 873
BfaI	CTAG	2 cut(s)	887, 944
BfmI	CTRYAG	3 cut(s)	25, 73, 281
BfuI	GTATCC	1 cut(s)	649
BisI	GCNGC	4 cut(s)	28, 284, 287, 314
BlsI	GCNGC	4 cut(s)	29, 285, 288, 315
Bme1390I	CCNGG	1 cut(s)	1040
Bme18I	GGWCC	1 cut(s)	847
BmeT110I	CYCGRG	1 cut(s)	803
BmgT120I	GGNCC	5 cut(s)	250, 787, 830, 847, 1066
BmiI	GGNNCC	4 cut(s)	607, 832, 848, 976
BmrFI	CCNGG	1 cut(s)	1040
BmrI	ACTGGG	1 cut(s)	1076
BmsI	GCATC	2 cut(s)	39, 436
BmuI	ACTGGG	1 cut(s)	1076
BpiI	GAAGAC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	1061
BpuEI	CTTGAG	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	637
BsaHI	GRCGYC	1 cut(s)	487
BsaI	GGTCTC	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	490
BsaXI	ACNNNNNCTCC	6 cut(s)	457, 487, 1102, 1132, 1189, 1219
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 840
Bse1I	ACTGG	1 cut(s)	1082
Bse3DI	GCAATG	1 cut(s)	1166
BseBI	CCWGG	1 cut(s)	1040
BseDI	CCNNGG	1 cut(s)	490
BseGI	GGATG	3 cut(s)	60, 677, 737
BseLI	CCNNNNNNNGG	2 cut(s)	258, 840
BseMI	GCAATG	1 cut(s)	1166
BseMII	CTCAG	4 cut(s)	221, 285, 739, 1086
BseNI	ACTGG	1 cut(s)	1082
BseSI	GKGCMC	2 cut(s)	610, 979
BseXI	GCAGC	3 cut(s)	39, 295, 298
BsgI	GTGCAG	2 cut(s)	608, 975
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	4 cut(s)	251, 788, 831, 1067
BshNI	GGYRCC	2 cut(s)	605, 974
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	803
BslFI	GGGAC	4 cut(s)	215, 860, 983, 1004
BslI	CCNNNNNNNGG	2 cut(s)	258, 840
BsmAI	GTCTC	3 cut(s)	455, 478, 873
BsmBI	CGTCTC	1 cut(s)	478
BsmFI	GGGAC	4 cut(s)	215, 860, 983, 1004
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	4 cut(s)	251, 788, 831, 1067
Bso31I	GGTCTC	1 cut(s)	455
BsoBI	CYCGRG	1 cut(s)	803
Bsp1286I	GDGCHC	3 cut(s)	223, 610, 979
Bsp1407I	TGTACA	1 cut(s)	510
Bsp143I	GATC	4 cut(s)	123, 496, 517, 539
Bsp19I	CCATGG	1 cut(s)	490
BspACI	CCGC	3 cut(s)	156, 314, 476
BspANI	GGCC	4 cut(s)	251, 788, 831, 1067
BspCNI	CTCAG	4 cut(s)	220, 286, 738, 1087
BspLI	GGNNCC	4 cut(s)	607, 832, 848, 976
BspMAI	CTGCAG	2 cut(s)	29, 285
BspPI	GGATC	2 cut(s)	491, 525
BspT107I	GGYRCC	2 cut(s)	605, 974
BspTNI	GGTCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	1166
BsrGI	TGTACA	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	1082
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	4 cut(s)	123, 496, 517, 539
BssNI	GRCGYC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	490
Bst2UI	CCWGG	1 cut(s)	1040
Bst4CI	ACNGT	1 cut(s)	860
Bst6I	CTCTTC	2 cut(s)	71, 190
BstACI	GRCGYC	1 cut(s)	487
BstAUI	TGTACA	1 cut(s)	510
BstBAI	YACGTR	1 cut(s)	637
BstC8I	GCNNGC	3 cut(s)	529, 591, 711
BstDEI	CTNAG	4 cut(s)	207, 294, 725, 1095
BstDSI	CCRYGG	1 cut(s)	490
BstF5I	GGATG	3 cut(s)	60, 677, 737
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	4 cut(s)	126, 499, 520, 542
BstMAI	GTCTC	3 cut(s)	455, 478, 873
BstMBI	GATC	4 cut(s)	123, 496, 517, 539
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 322, 599, 818, 1128
BstNI	CCWGG	1 cut(s)	1040
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	1038
BstSFI	CTRYAG	3 cut(s)	25, 73, 281
BstSLI	GKGCMC	2 cut(s)	610, 979
BstV1I	GCAGC	3 cut(s)	39, 295, 298
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	2 cut(s)	496, 517
BstYI	RGATCY	2 cut(s)	496, 517
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	4 cut(s)	251, 788, 831, 1067
BtgI	CCRYGG	1 cut(s)	490
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	60, 677, 737
BtsIMutI	CAGTG	1 cut(s)	856
Cac8I	GCNNGC	3 cut(s)	529, 591, 711
CaiI	CAGNNNCTG	1 cut(s)	1182
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	5 cut(s)	250, 787, 830, 847, 1066
CseI	GACGC	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	511, 1099
CspCI	CAANNNNNGTGG	2 cut(s)	824, 859
CviQI	GTAC	2 cut(s)	511, 1099
DdeI	CTNAG	4 cut(s)	207, 294, 725, 1095
DpnI	GATC	4 cut(s)	125, 498, 519, 541
DpnII	GATC	4 cut(s)	123, 496, 517, 539
DraIII	CACNNNGTG	1 cut(s)	506
DrdI	GACNNNNNNGTC	1 cut(s)	421
DseDI	GACNNNNNNGTC	1 cut(s)	421
Eam1104I	CTCTTC	2 cut(s)	71, 190
EarI	CTCTTC	2 cut(s)	71, 190
EciI	GGCGGA	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	490
Eco31I	GGTCTC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	847
Eco57I	CTGAAG	2 cut(s)	175, 464
Eco88I	CYCGRG	1 cut(s)	803
EcoO109I	RGGNCCY	1 cut(s)	1066
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	1038
EcoT14I	CCWWGG	1 cut(s)	490
EcoT22I	ATGCAT	1 cut(s)	1108
ErhI	CCWWGG	1 cut(s)	490
Esp3I	CGTCTC	1 cut(s)	478
FaqI	GGGAC	4 cut(s)	215, 860, 983, 1004
Fnu4HI	GCNGC	4 cut(s)	28, 284, 287, 314
FokI	GGATG	3 cut(s)	47, 664, 724
Fsp4HI	GCNGC	4 cut(s)	28, 284, 287, 314
FspBI	CTAG	2 cut(s)	887, 944
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	4 cut(s)	28, 284, 287, 314
GsuI	CTGGAG	1 cut(s)	1061
HaeIII	GGCC	4 cut(s)	251, 788, 831, 1067
HgaI	GACGC	1 cut(s)	495
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	487
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	4 cut(s)	203, 358, 947, 1179
HphI	GGTGA	4 cut(s)	104, 139, 163, 836
Hpy166II	GTNNAC	2 cut(s)	414, 511
Hpy188I	TCNGA	4 cut(s)	194, 295, 483, 627
Hpy188III	TCNNGA	4 cut(s)	362, 371, 521, 944
Hpy8I	GTNNAC	2 cut(s)	414, 511
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	4 cut(s)	25, 46, 102, 199
HpyCH4III	ACNGT	1 cut(s)	860
HpyCH4IV	ACGT	2 cut(s)	636, 685
HpyCH4V	TGCA	7 cut(s)	27, 283, 589, 956, 1106, 1176, 1217
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 322, 599, 818, 1128
HpyF3I	CTNAG	4 cut(s)	207, 294, 725, 1095
HpySE526I	ACGT	2 cut(s)	636, 685
Hsp92I	GRCGYC	1 cut(s)	487
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	123, 496, 517, 539
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	3 cut(s)	39, 295, 298
LweI	GCATC	2 cut(s)	39, 436
MaeI	CTAG	2 cut(s)	887, 944
MaeII	ACGT	2 cut(s)	636, 685
MaeIII	GTNAC	1 cut(s)	919
MalI	GATC	4 cut(s)	125, 498, 519, 541
MboI	GATC	4 cut(s)	123, 496, 517, 539
MboII	GAAGA	8 cut(s)	58, 177, 255, 258, 267, 316, 319, 1125
MfeI	CAATTG	1 cut(s)	891
MflI	RGATCY	2 cut(s)	496, 517
MhlI	GDGCHC	3 cut(s)	223, 610, 979
MluCI	AATT	6 cut(s)	86, 108, 376, 628, 891, 1028
MlyI	GAGTC	2 cut(s)	197, 1173
MmeI	TCCRAC	1 cut(s)	605
Mph1103I	ATGCAT	1 cut(s)	1108
MroXI	GAANNNNTTC	2 cut(s)	14, 932
MslI	CAYNNNNRTG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	1040
MunI	CAATTG	1 cut(s)	891
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	1040
MwoI	GCNNNNNNNGC	5 cut(s)	10, 322, 599, 818, 1128
NcoI	CCATGG	1 cut(s)	490
NdeII	GATC	4 cut(s)	123, 496, 517, 539
NlaIV	GGNNCC	4 cut(s)	607, 832, 848, 976
NmuCI	GTSAC	1 cut(s)	919
NsiI	ATGCAT	1 cut(s)	1108
NspI	RCATGY	1 cut(s)	329
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	2 cut(s)	14, 932
PfeI	GAWTC	2 cut(s)	358, 947
PflFI	GACNNNGTC	1 cut(s)	995
PkrI	GCNGC	4 cut(s)	29, 285, 288, 315
Ple19I	CGATCG	1 cut(s)	126
PleI	GAGTC	2 cut(s)	197, 1173
PpsI	GAGTC	2 cut(s)	197, 1173
Ppu21I	YACGTR	1 cut(s)	637
Psp6I	CCWGG	1 cut(s)	1038
PspGI	CCWGG	1 cut(s)	1038
PspN4I	GGNNCC	4 cut(s)	607, 832, 848, 976
PspPI	GGNCC	5 cut(s)	250, 787, 830, 847, 1066
PstI	CTGCAG	2 cut(s)	29, 285
PstNI	CAGNNNCTG	1 cut(s)	1182
PsuI	RGATCY	2 cut(s)	496, 517
PsyI	GACNNNGTC	1 cut(s)	995
PvuI	CGATCG	1 cut(s)	126
RsaI	GTAC	2 cut(s)	512, 1100
RsaNI	GTAC	2 cut(s)	511, 1099
RseI	CAYNNNNRTG	1 cut(s)	295
SatI	GCNGC	4 cut(s)	28, 284, 287, 314
Sau3AI	GATC	4 cut(s)	123, 496, 517, 539
Sau96I	GGNCC	5 cut(s)	250, 787, 830, 847, 1066
SchI	GAGTC	2 cut(s)	197, 1173
ScrFI	CCNGG	1 cut(s)	1040
SduI	GDGCHC	3 cut(s)	223, 610, 979
SfaNI	GCATC	2 cut(s)	39, 436
SfcI	CTRYAG	3 cut(s)	25, 73, 281
SinI	GGWCC	1 cut(s)	847
SmiMI	CAYNNNNRTG	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	6 cut(s)	86, 108, 376, 628, 891, 1028
SsiI	CCGC	3 cut(s)	156, 314, 476
SspMI	CTAG	2 cut(s)	887, 944
StyD4I	CCNGG	1 cut(s)	1038
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	860
TaiI	ACGT	2 cut(s)	639, 688
TaqI	TCGA	2 cut(s)	84, 126
TasI	AATT	6 cut(s)	86, 108, 376, 628, 891, 1028
TatI	WGTACW	1 cut(s)	510
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	2 cut(s)	358, 947
TscAI	CASTG	1 cut(s)	863
TseFI	GTSAC	1 cut(s)	919
TseI	GCWGC	3 cut(s)	27, 283, 286
Tsp45I	GTSAC	1 cut(s)	919
TspDTI	ATGAA	3 cut(s)	28, 735, 1140
TspRI	CASTG	1 cut(s)	863
Tth111I	GACNNNGTC	1 cut(s)	995
VpaK11BI	GGWCC	1 cut(s)	847
XapI	RAATTY	2 cut(s)	86, 1028
XbaI	TCTAGA	1 cut(s)	943
XceI	RCATGY	1 cut(s)	329
XmnI	GAANNNNTTC	2 cut(s)	14, 932
XspI	CTAG	2 cut(s)	887, 944
Zsp2I	ATGCAT	1 cut(s)	1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.