FvH4_5g31230

Glycosyltransferase family 10 (fucosyltransferase) C-term

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014607
Physical Location & Seq
Forward (+)
22125680 .. 22132497
6818 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31230.t1

Sequence Viewer

Length: 1242 bp
ATGCCATTGAAGCCCTTGAATTCATTCAGCATCGCCTTCATGTTGGGCGGCGCATTCCTCCTCCTCTTCCTCTGTAGCTTCCTCGAATTCCCTTCTCTCTCCACCTCACAACAACCCCCAATCGATGACCACCACCACCACCCTTCTCTATCTCTCACCAACTCCGCCCCTGACCCATTCACCAATCTCATCTCCTCCTTCAGAAAATGGGACTCTCTTGTGGGTTGTCCTCGTTTCGCTGAAAAGCACAAGTCTTTGACCCAAAACGGGTCTTCTTCTTCGTCTTCTCTGCAGCAGCCATCTGAGTGTGGGAAGAAGAAGAAGACCCAGATGGAGCATGTCAGCGTTTTGGTCAAAGGGTGGACTTGGATTCCTGATAATCTGGATAATTTGTATTCGTGTTCTTGTGGGTTGAGCTGTTTGTGGACTAAATCGGCTGTTCTTGCTGACAAGCCTGATGCCCTGTTGTTTGAGACTACTACTCCTCCGTCTCAGAGACTCCCTGGAGATCCACTTCGTGTGTACATGGATCTTGAGGCTGGCAGGAAGCGATCTGGCGTTGAGGATTTGTATATAAGTTATCATGCCAAAGACGATGTCCAGGCTACATATGCAGGTGCACTCTTTCACAATGGTCGGAATTATCATGTATCTTCTTCTAAAAACAATGATACACTTATCTATTGGTCATCGTCACGTTGTCTGCCTCAAAGAAATAAGCTCGCCAAGAGGCTTCTCACCTTACTACCACACCATTCATTCGGCAAGTGCTTGAATAATGTCGGTGGTTTGGACATGGCCCTTTCTTTCTACCCCGAGTGTGCCAATGGTGCTGGTGATGGCCCCCAAAAATGGTGGGACCATCTACACTGTGCAATGTCTCACTATAAGTTTGTTCTAGCTATCGAAAACATGATGACAGAGAGTTATGTGACGGAGAAACTGTTTTATGCTCTAGATTCTGGTGCAGTTCCTATCTACTTTGGTGCCCCTAATGTGTGGGACTTTGTCCCTCCCCATTCGATAATAGATGGCAGTAAATTCAGCAACCTGGAGGAATTGGCTTCTTTTGTAAAGGCCCTTGCCAATGACCCAGTTGCTTATGCTGAGTACCATGCCTGGAGAAGATGTGGCGTATTGGGCAACTATGTAAAAACTCGTGCACTGAGCCTTGACACATTGCCTTGCAGACTTTGCGAGGCAGTTGGGAGAAAGGGTGGGAGATATGCAAAAGGGTACTGA

Protein Analysis

414

Amino Acids

45.99

Weight (kDa)

8.32

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_10 PF00852 223 - 406 5.6e-29 Glycosyltransferase family 10 (fucosyltransferase) C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014607)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71990
fragaria_vesca FvH4_5g31230
malus_domestica MD08G1220600.v1.1 MD15G1411300.v1.1
prunus_persica Prupe.1G557500_v2.0.a1
pyrus_communis pycom08g19140
rosa_chinensis RchiOBHm_Chr7g0226481
rosa_laevigata RLG00000001727
rosa_multiflora Rmu_sc0001423.1_g000068 Rmu_sc0001470.1_g000012
rosa_roxburghii Rroxscaffold_3G00232800
rosa_rugosa Rorug07G0237400
rosa_samantha Rh7AG384600 Rh7BG371400 Rh7CG403900 Rh7DG383500
rosa_wichuraiana Rw7G032300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 605
Acc36I ACCTGC 1 cut(s) 605
AccB1I GGYRCC 1 cut(s) 986
AciI CCGC 2 cut(s) 48, 165
AclWI GGATC 2 cut(s) 503, 537
AcsI RAATTY 3 cut(s) 19, 86, 1040
AcuI CTGAAG 1 cut(s) 184
AdeI CACNNNGTG 1 cut(s) 518
AfaI GTAC 3 cut(s) 524, 1112, 1238
AfiI CCNNNNNNNGG 2 cut(s) 267, 852
AgsI TTSAA 3 cut(s) 10, 19, 775
AjnI CCWGG 4 cut(s) 502, 600, 1050, 1118
AluBI AGCT 4 cut(s) 78, 417, 721, 902
AluI AGCT 4 cut(s) 78, 417, 721, 902
Alw21I GWGCWC 2 cut(s) 622, 1165
Alw26I GTCTC 4 cut(s) 467, 490, 495, 885
Alw44I GTGCAC 2 cut(s) 618, 1161
AlwI GGATC 2 cut(s) 503, 537
Ama87I CYCGRG 1 cut(s) 815
AoxI GGCC 3 cut(s) 798, 841, 1077
ApaLI GTGCAC 2 cut(s) 618, 1161
ApeKI GCWGC 2 cut(s) 292, 295
ApoI RAATTY 3 cut(s) 19, 86, 1040
ArsI GACNNNNNNTTYG 2 cut(s) 582, 614
Asp700I GAANNNNTTC 1 cut(s) 23
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 4 cut(s) 799, 842, 859, 1078
AsuHPI GGTGA 4 cut(s) 148, 172, 730, 848
AvaI CYCGRG 1 cut(s) 815
AvaII GGWCC 1 cut(s) 859
BaeGI GKGCMC 3 cut(s) 622, 991, 1165
BanI GGYRCC 1 cut(s) 986
BauI CACGAG 1 cut(s) 1158
BbsI GAAGAC 3 cut(s) 264, 276, 329
Bbv12I GWGCWC 2 cut(s) 622, 1165
BbvI GCAGC 2 cut(s) 304, 307
BccI CCATC 5 cut(s) 307, 325, 833, 870, 1025
BciT130I CCWGG 4 cut(s) 504, 602, 1052, 1120
BcoDI GTCTC 4 cut(s) 467, 490, 495, 885
BfaI CTAG 2 cut(s) 899, 956
BfmI CTRYAG 2 cut(s) 73, 290
BfuAI ACCTGC 1 cut(s) 605
BisI GCNGC 3 cut(s) 49, 293, 296
BlsI GCNGC 3 cut(s) 50, 294, 297
Bme1390I CCNGG 4 cut(s) 504, 602, 1052, 1120
Bme18I GGWCC 1 cut(s) 859
BmeT110I CYCGRG 1 cut(s) 815
BmgT120I GGNCC 4 cut(s) 799, 842, 859, 1078
BmiI GGNNCC 3 cut(s) 844, 860, 988
BmrFI CCNGG 4 cut(s) 504, 602, 1052, 1120
BmrI ACTGGG 1 cut(s) 1088
BmsI GCATC 2 cut(s) 39, 448
BmuI ACTGGG 1 cut(s) 1088
BpiI GAAGAC 3 cut(s) 264, 276, 329
BpmI CTGGAG 3 cut(s) 525, 1073, 1141
BpuEI CTTGAG 1 cut(s) 554
Bsa29I ATCGAT 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 502
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 852
Bse1I ACTGG 1 cut(s) 1094
Bse3DI GCAATG 2 cut(s) 882, 1178
BseBI CCWGG 4 cut(s) 504, 602, 1052, 1120
BseCI ATCGAT 1 cut(s) 123
BseDI CCNNGG 1 cut(s) 502
BseLI CCNNNNNNNGG 2 cut(s) 267, 852
BseMI GCAATG 2 cut(s) 882, 1178
BseMII CTCAG 4 cut(s) 294, 506, 1098, 1157
BseNI ACTGG 1 cut(s) 1094
BseRI GAGGAG 4 cut(s) 50, 53, 184, 474
BseSI GKGCMC 3 cut(s) 622, 991, 1165
BseXI GCAGC 2 cut(s) 304, 307
BsgI GTGCAG 1 cut(s) 987
BshFI GGCC 3 cut(s) 800, 843, 1079
BshNI GGYRCC 1 cut(s) 986
BshVI ATCGAT 1 cut(s) 123
BsiHKAI GWGCWC 2 cut(s) 622, 1165
BsiHKCI CYCGRG 1 cut(s) 815
BslFI GGGAC 4 cut(s) 224, 872, 995, 1016
BslI CCNNNNNNNGG 2 cut(s) 267, 852
BsmAI GTCTC 4 cut(s) 467, 490, 495, 885
BsmBI CGTCTC 1 cut(s) 495
BsmFI GGGAC 4 cut(s) 224, 872, 995, 1016
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 3 cut(s) 800, 843, 1079
BsoBI CYCGRG 1 cut(s) 815
Bsp1286I GDGCHC 3 cut(s) 622, 991, 1165
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 3 cut(s) 508, 529, 551
BspACI CCGC 2 cut(s) 48, 165
BspANI GGCC 3 cut(s) 800, 843, 1079
BspCNI CTCAG 4 cut(s) 295, 505, 1099, 1158
BspDI ATCGAT 1 cut(s) 123
BspLI GGNNCC 3 cut(s) 844, 860, 988
BspMAI CTGCAG 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 605
BspPI GGATC 2 cut(s) 503, 537
BspT107I GGYRCC 1 cut(s) 986
BsrDI GCAATG 2 cut(s) 882, 1178
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 1 cut(s) 1094
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 3 cut(s) 508, 529, 551
BssSI CACGAG 1 cut(s) 1158
Bst2BI CACGAG 1 cut(s) 1158
Bst2UI CCWGG 4 cut(s) 504, 602, 1052, 1120
Bst4CI ACNGT 2 cut(s) 872, 945
Bst6I CTCTTC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 1194
BstAUI TGTACA 1 cut(s) 522
BstC8I GCNNGC 2 cut(s) 541, 723
BstDEI CTNAG 4 cut(s) 303, 492, 1107, 1166
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 3 cut(s) 511, 532, 554
BstMAI GTCTC 4 cut(s) 467, 490, 495, 885
BstMBI GATC 3 cut(s) 508, 529, 551
BstMWI GCNNNNNNNGC 6 cut(s) 10, 443, 611, 830, 1140, 1194
BstNI CCWGG 4 cut(s) 504, 602, 1052, 1120
BstNSI RCATGY 1 cut(s) 341
BstSCI CCNGG 4 cut(s) 502, 600, 1050, 1118
BstSFI CTRYAG 2 cut(s) 73, 290
BstSLI GKGCMC 3 cut(s) 622, 991, 1165
BstV1I GCAGC 2 cut(s) 304, 307
BstV2I GAAGAC 3 cut(s) 264, 276, 329
BstX2I RGATCY 2 cut(s) 508, 529
BstYI RGATCY 2 cut(s) 508, 529
Bsu15I ATCGAT 1 cut(s) 123
BsuRI GGCC 3 cut(s) 800, 843, 1079
BsuTUI ATCGAT 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 16
BtsIMutI CAGTG 2 cut(s) 868, 1163
BveI ACCTGC 1 cut(s) 605
Cac8I GCNNGC 2 cut(s) 541, 723
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 4 cut(s) 799, 842, 859, 1078
ClaI ATCGAT 1 cut(s) 123
Csp6I GTAC 3 cut(s) 523, 1111, 1237
CspCI CAANNNNNGTGG 2 cut(s) 836, 871
CviAII CATG 8 cut(s) 40, 338, 526, 584, 647, 796, 913, 1115
CviQI GTAC 3 cut(s) 523, 1111, 1237
DdeI CTNAG 4 cut(s) 303, 492, 1107, 1166
DpnI GATC 3 cut(s) 510, 531, 553
DpnII GATC 3 cut(s) 508, 529, 551
DraIII CACNNNGTG 1 cut(s) 518
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
EciI GGCGGA 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 859
Eco57I CTGAAG 1 cut(s) 184
Eco88I CYCGRG 1 cut(s) 815
EcoO109I RGGNCCY 1 cut(s) 1078
EcoRI GAATTC 2 cut(s) 19, 86
EcoRII CCWGG 4 cut(s) 502, 600, 1050, 1118
Esp3I CGTCTC 1 cut(s) 495
FaeI CATG 8 cut(s) 43, 341, 529, 587, 650, 799, 916, 1118
FaqI GGGAC 4 cut(s) 224, 872, 995, 1016
FatI CATG 8 cut(s) 39, 337, 525, 583, 646, 795, 912, 1114
FauNDI CATATG 1 cut(s) 610
Fnu4HI GCNGC 3 cut(s) 49, 293, 296
Fsp4HI GCNGC 3 cut(s) 49, 293, 296
FspBI CTAG 2 cut(s) 899, 956
GlaI GCGC 1 cut(s) 52
GluI GCNGC 3 cut(s) 49, 293, 296
GsuI CTGGAG 3 cut(s) 525, 1073, 1141
HaeIII GGCC 3 cut(s) 800, 843, 1079
HhaI GCGC 1 cut(s) 53
Hin1II CATG 8 cut(s) 43, 341, 529, 587, 650, 799, 916, 1118
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 4 cut(s) 212, 370, 498, 959
HphI GGTGA 4 cut(s) 148, 172, 730, 848
Hpy166II GTNNAC 5 cut(s) 363, 426, 523, 620, 1163
Hpy188I TCNGA 4 cut(s) 203, 304, 495, 639
Hpy188III TCNNGA 4 cut(s) 374, 383, 533, 956
Hpy8I GTNNAC 5 cut(s) 363, 426, 523, 620, 1163
HpyAV CCTTC 4 cut(s) 46, 102, 153, 208
HpyCH4III ACNGT 2 cut(s) 872, 945
HpyCH4IV ACGT 1 cut(s) 697
HpyCH4V TGCA 8 cut(s) 292, 614, 620, 875, 968, 1163, 1188, 1229
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 443, 611, 830, 1140, 1194
HpyF3I CTNAG 4 cut(s) 303, 492, 1107, 1166
HpySE526I ACGT 1 cut(s) 697
Hsp92II CATG 8 cut(s) 43, 341, 529, 587, 650, 799, 916, 1118
HspAI GCGC 1 cut(s) 51
Kzo9I GATC 3 cut(s) 508, 529, 551
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 2 cut(s) 304, 307
LweI GCATC 2 cut(s) 39, 448
MaeI CTAG 2 cut(s) 899, 956
MaeII ACGT 1 cut(s) 697
MaeIII GTNAC 2 cut(s) 693, 931
MalI GATC 3 cut(s) 510, 531, 553
MboI GATC 3 cut(s) 508, 529, 551
MflI RGATCY 2 cut(s) 508, 529
MhlI GDGCHC 3 cut(s) 622, 991, 1165
MluCI AATT 6 cut(s) 19, 86, 388, 640, 1040, 1058
MlyI GAGTC 2 cut(s) 206, 492
MmeI TCCRAC 1 cut(s) 617
MroXI GAANNNNTTC 1 cut(s) 23
MslI CAYNNNNRTG 1 cut(s) 304
MspR9I CCNGG 4 cut(s) 504, 602, 1052, 1120
Mva1269I GAATGC 1 cut(s) 53
MvaI CCWGG 4 cut(s) 504, 602, 1052, 1120
MwoI GCNNNNNNNGC 6 cut(s) 10, 443, 611, 830, 1140, 1194
NdeI CATATG 1 cut(s) 610
NdeII GATC 3 cut(s) 508, 529, 551
NlaIII CATG 8 cut(s) 43, 341, 529, 587, 650, 799, 916, 1118
NlaIV GGNNCC 3 cut(s) 844, 860, 988
NmuCI GTSAC 2 cut(s) 693, 931
NspI RCATGY 1 cut(s) 341
PaqCI CACCTGC 1 cut(s) 605
PctI GAATGC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 370, 959
PflFI GACNNNGTC 2 cut(s) 596, 1007
PkrI GCNGC 3 cut(s) 50, 294, 297
PleI GAGTC 2 cut(s) 206, 492
PpsI GAGTC 2 cut(s) 206, 492
Psp6I CCWGG 4 cut(s) 502, 600, 1050, 1118
PspGI CCWGG 4 cut(s) 502, 600, 1050, 1118
PspN4I GGNNCC 3 cut(s) 844, 860, 988
PspPI GGNCC 4 cut(s) 799, 842, 859, 1078
PstI CTGCAG 1 cut(s) 294
PsuI RGATCY 2 cut(s) 508, 529
PsyI GACNNNGTC 2 cut(s) 596, 1007
RsaI GTAC 3 cut(s) 524, 1112, 1238
RsaNI GTAC 3 cut(s) 523, 1111, 1237
RseI CAYNNNNRTG 1 cut(s) 304
SatI GCNGC 3 cut(s) 49, 293, 296
Sau3AI GATC 3 cut(s) 508, 529, 551
Sau96I GGNCC 4 cut(s) 799, 842, 859, 1078
SchI GAGTC 2 cut(s) 206, 492
ScrFI CCNGG 4 cut(s) 504, 602, 1052, 1120
SduI GDGCHC 3 cut(s) 622, 991, 1165
SetI ASST 9 cut(s) 80, 107, 419, 619, 700, 723, 743, 904, 1053
SfaNI GCATC 2 cut(s) 39, 448
SfcI CTRYAG 2 cut(s) 73, 290
SinI GGWCC 1 cut(s) 859
SmiMI CAYNNNNRTG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
Sse9I AATT 6 cut(s) 19, 86, 388, 640, 1040, 1058
SsiI CCGC 2 cut(s) 48, 165
SspMI CTAG 2 cut(s) 899, 956
StyD4I CCNGG 4 cut(s) 502, 600, 1050, 1118
TaaI ACNGT 2 cut(s) 872, 945
TaiI ACGT 1 cut(s) 700
TaqI TCGA 4 cut(s) 84, 123, 906, 1022
TasI AATT 6 cut(s) 19, 86, 388, 640, 1040, 1058
TatI WGTACW 1 cut(s) 522
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 2 cut(s) 370, 959
TscAI CASTG 2 cut(s) 875, 1170
TseFI GTSAC 2 cut(s) 693, 931
TseI GCWGC 2 cut(s) 292, 295
Tsp45I GTSAC 2 cut(s) 693, 931
TspDTI ATGAA 3 cut(s) 12, 28, 747
TspGWI ACGGA 2 cut(s) 477, 950
TspRI CASTG 2 cut(s) 875, 1170
Tth111I GACNNNGTC 2 cut(s) 596, 1007
VneI GTGCAC 2 cut(s) 618, 1161
VpaK11BI GGWCC 1 cut(s) 859
XapI RAATTY 3 cut(s) 19, 86, 1040
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 2 cut(s) 899, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.