MD08G1220600.v1.1

Glycosyltransferase family 10 (fucosyltransferase) C-term

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
28335737 .. 28345188
9452 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1220600.v1.1.491

Sequence Viewer

Length: 1218 bp
ATGCAGTTAAAGCCCTTCAACTCCTTCACCATCGCCTTCATGATGAGCGGCGCCTTCTTCATCCTCTTCTTCTGCAGCTTCCTCGAATTCCCTCCCATATCGACCTCGGTCCAACCCACCAACGATCCCACTCCGTCCCTCACCAATTCCGCACCCGACCCGTTTACCCATTTGATCGGCGCGTTCAGGAAGTGGGATGCCCAGGTGGGTTGCCCCCGTTTCAAAGAGAAGCACAACCAGCAGCTGTTCCCGAAAAACTCTTCTTCTCTGCAGCAAATTCGCGGCGAATCGGAATGTGGGGAGGCGAAACCGGAGCATGTTAGCGTGTTGGTGAAAGGGTGGACTTGGATTCCTGATAATTTGGATAATTTGTATTCGTGCCCGTGTGGGTTGAGCTGTTTGTGGACTAAATCTTCGGTTCTTGCTGACAAGCCTGATGCTTTGCTGTTTGAGACCACTACACCTCCCCTTCAGAGACGCACTGGAGATCCACTTCGTGTGTACATGGATCTTGAGGCTGGCAGGAAGCGATCTGGTGTTGAGGATATATTTATAAGTTATCACGCCGAAGATGATGTGCAGTCCACCTATGCTGGTGCACTCTTTCACAATGGTCGAAATTACCACGTGTCTCCTTATAAACAAAAAGACACACTTGTTTATTGGTCATCATCGCGCTGCCTACCTCAAAGAAATAAGCTTGCCCACAAGCTTCTCAGCTTACTACCCCACCATTCATTTGGCAAGTGCTTGAACAACGTCGGCGGCTTGGACATGGCCCTTTCTTTCTACCCCGAGTGTGCTAGTGATACTAGTGTCACCCAAAAATGGTGGGATCATTTACATTGTGCCATGTCTCACTATAAGTTTGTTCTTGCCATCGAAAACACAATGACAGAGAGTTATGTGACGGAGAAGCTATTTTATGCCCTAGACTCTGGGTCAGTTCCAATCTATTTTGGTGCCCCTAATGTCTGGGACTTTGTTCCTCCCCATTCGATAATCGATGGCACTAAATTTAGCAGCTTGGAGGAATTGGCATCTTACGTGAAGTCCCTCGCCAGTGACCCAGTTGCGTATGCCGAGTACCATGCCTGGCGAAGATGCGGGGTAATGGCGAATTACGTTAAAACCCGAGCATTGAGCCTTGACACATTACCATGCAGGCTCTGCGAAGCTGTTAGCAGAAAAGGTGGGAGAAATGGAAGAACCAAGTGA

Protein Analysis

406

Amino Acids

45.63

Weight (kDa)

7.91

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_10 PF00852 214 - 398 1.1e-31 Glycosyltransferase family 10 (fucosyltransferase) C-term
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014607)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G71990
fragaria_vesca FvH4_5g31230
malus_domestica MD08G1220600.v1.1 MD15G1411300.v1.1
prunus_persica Prupe.1G557500_v2.0.a1
pyrus_communis pycom08g19140
rosa_chinensis RchiOBHm_Chr7g0226481
rosa_laevigata RLG00000001727
rosa_multiflora Rmu_sc0001423.1_g000068 Rmu_sc0001470.1_g000012
rosa_roxburghii Rroxscaffold_3G00232800
rosa_rugosa Rorug07G0237400
rosa_samantha Rh7AG384600 Rh7BG371400 Rh7CG403900 Rh7DG383500
rosa_wichuraiana Rw7G032300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 554, 639
AccB1I GGYRCC 2 cut(s) 50, 962
AccBSI CCGCTC 1 cut(s) 48
AccII CGCG 3 cut(s) 182, 282, 676
AciI CCGC 5 cut(s) 48, 150, 282, 765, 1107
AclWI GGATC 4 cut(s) 119, 482, 516, 843
AcsI RAATTY 3 cut(s) 86, 276, 1016
AcuI CTGAAG 1 cut(s) 455
AcvI CACGTG 1 cut(s) 628
AcyI GRCGYC 1 cut(s) 51
AdeI CACNNNGTG 1 cut(s) 497
AfaI GTAC 2 cut(s) 503, 1088
AfiI CCNNNNNNNGG 1 cut(s) 828
AflIII ACRYGT 1 cut(s) 627
AgsI TTSAA 3 cut(s) 19, 223, 754
AhdI GACNNNNNGTC 1 cut(s) 940
AhlI ACTAGT 1 cut(s) 812
AjnI CCWGG 2 cut(s) 201, 1094
AluBI AGCT 9 cut(s) 78, 244, 396, 700, 712, 720, 919, 1026, 1178
AluI AGCT 9 cut(s) 78, 244, 396, 700, 712, 720, 919, 1026, 1178
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 4 cut(s) 446, 469, 636, 861
Alw44I GTGCAC 1 cut(s) 597
AlwI GGATC 4 cut(s) 119, 482, 516, 843
AlwNI CAGNNNCTG 2 cut(s) 244, 1170
Ama87I CYCGRG 2 cut(s) 794, 1134
AoxI GGCC 1 cut(s) 777
ApaLI GTGCAC 1 cut(s) 597
ApeKI GCWGC 5 cut(s) 75, 241, 271, 678, 1023
ApoI RAATTY 3 cut(s) 86, 276, 1016
ArsI GACNNNNNNTTYG 2 cut(s) 397, 429
AspLEI GCGC 3 cut(s) 53, 182, 678
AspS9I GGNCC 2 cut(s) 109, 778
AsuHPI GGTGA 4 cut(s) 19, 133, 343, 811
AvaI CYCGRG 2 cut(s) 794, 1134
AvaII GGWCC 1 cut(s) 109
BaeGI GKGCMC 3 cut(s) 383, 601, 967
BaeI ACNNNNGTAYC 2 cut(s) 801, 834
BanI GGYRCC 2 cut(s) 50, 962
BbrPI CACGTG 1 cut(s) 628
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 5 cut(s) 87, 253, 283, 665, 1035
BccI CCATC 3 cut(s) 38, 887, 1001
BcgI CGANNNNNNTGC 6 cut(s) 64, 98, 260, 294, 1073, 1107
BciT130I CCWGG 2 cut(s) 203, 1096
BcoDI GTCTC 4 cut(s) 446, 469, 636, 861
BcuI ACTAGT 1 cut(s) 812
BfaI CTAG 3 cut(s) 804, 813, 932
BfmI CTRYAG 2 cut(s) 73, 269
BfoI RGCGCY 1 cut(s) 54
BisI GCNGC 8 cut(s) 49, 76, 242, 272, 283, 679, 766, 1024
BlsI GCNGC 8 cut(s) 50, 77, 243, 273, 284, 680, 767, 1025
Bme1390I CCNGG 2 cut(s) 203, 1096
Bme18I GGWCC 1 cut(s) 109
BmeRI GACNNNNNGTC 1 cut(s) 940
BmeT110I CYCGRG 2 cut(s) 794, 1134
BmgT120I GGNCC 2 cut(s) 109, 778
BmiI GGNNCC 2 cut(s) 52, 964
BmrFI CCNGG 2 cut(s) 203, 1096
BmrI ACTGGG 1 cut(s) 1064
BmsI GCATC 4 cut(s) 187, 427, 1049, 1094
BmuI ACTGGG 1 cut(s) 1064
BoxI GACNNNNGTC 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 533
Bsa29I ATCGAT 1 cut(s) 1005
BsaAI YACGTR 2 cut(s) 628, 1048
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 105, 201
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 1 cut(s) 828
Bse1I ACTGG 3 cut(s) 487, 1062, 1070
BseBI CCWGG 2 cut(s) 203, 1096
BseCI ATCGAT 1 cut(s) 1005
BseDI CCNNGG 2 cut(s) 105, 201
BseGI GGATG 2 cut(s) 60, 202
BseLI CCNNNNNNNGG 1 cut(s) 828
BseMII CTCAG 1 cut(s) 730
BseNI ACTGG 3 cut(s) 487, 1062, 1070
BseSI GKGCMC 3 cut(s) 383, 601, 967
BseXI GCAGC 5 cut(s) 87, 253, 283, 665, 1035
BsgI GTGCAG 1 cut(s) 599
Bsh1236I CGCG 3 cut(s) 182, 282, 676
BshFI GGCC 1 cut(s) 779
BshNI GGYRCC 2 cut(s) 50, 962
BshVI ATCGAT 1 cut(s) 1005
BsiHKAI GWGCWC 1 cut(s) 601
BsiHKCI CYCGRG 2 cut(s) 794, 1134
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 3 cut(s) 121, 992, 1039
BslI CCNNNNNNNGG 1 cut(s) 828
BsmAI GTCTC 4 cut(s) 446, 469, 636, 861
BsmBI CGTCTC 1 cut(s) 469
BsmFI GGGAC 3 cut(s) 121, 992, 1039
BsnI GGCC 1 cut(s) 779
Bso31I GGTCTC 1 cut(s) 446
BsoBI CYCGRG 2 cut(s) 794, 1134
Bsp1286I GDGCHC 3 cut(s) 383, 601, 967
Bsp1407I TGTACA 1 cut(s) 501
Bsp143I GATC 6 cut(s) 124, 174, 487, 508, 530, 835
BspACI CCGC 5 cut(s) 48, 150, 282, 765, 1107
BspANI GGCC 1 cut(s) 779
BspCNI CTCAG 1 cut(s) 729
BspDI ATCGAT 1 cut(s) 1005
BspFNI CGCG 3 cut(s) 182, 282, 676
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 52, 964
BspMAI CTGCAG 2 cut(s) 77, 273
BspPI GGATC 4 cut(s) 119, 482, 516, 843
BspT107I GGYRCC 2 cut(s) 50, 962
BspTNI GGTCTC 1 cut(s) 446
BsrBI CCGCTC 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 3 cut(s) 487, 1062, 1070
BssECI CCNNGG 2 cut(s) 105, 201
BssMI GATC 6 cut(s) 124, 174, 487, 508, 530, 835
BssNI GRCGYC 1 cut(s) 51
Bst2UI CCWGG 2 cut(s) 203, 1096
Bst6I CTCTTC 2 cut(s) 71, 265
BstACI GRCGYC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 1170
BstAUI TGTACA 1 cut(s) 501
BstBAI YACGTR 2 cut(s) 628, 1048
BstC8I GCNNGC 3 cut(s) 520, 702, 1166
BstDEI CTNAG 1 cut(s) 716
BstF5I GGATG 2 cut(s) 60, 202
BstFNI CGCG 3 cut(s) 182, 282, 676
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 3 cut(s) 53, 182, 678
BstKTI GATC 6 cut(s) 127, 177, 490, 511, 533, 838
BstMAI GTCTC 4 cut(s) 446, 469, 636, 861
BstMBI GATC 6 cut(s) 124, 174, 487, 508, 530, 835
BstMWI GCNNNNNNNGC 3 cut(s) 10, 238, 1170
BstNI CCWGG 2 cut(s) 203, 1096
BstNSI RCATGY 1 cut(s) 320
BstPAI GACNNNNGTC 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 201, 1094
BstSFI CTRYAG 2 cut(s) 73, 269
BstSLI GKGCMC 3 cut(s) 383, 601, 967
BstUI CGCG 3 cut(s) 182, 282, 676
BstV1I GCAGC 5 cut(s) 87, 253, 283, 665, 1035
BstX2I RGATCY 2 cut(s) 487, 508
BstXI CCANNNNNNTGG 1 cut(s) 740
BstYI RGATCY 2 cut(s) 487, 508
Bsu15I ATCGAT 1 cut(s) 1005
BsuRI GGCC 1 cut(s) 779
BsuTUI ATCGAT 1 cut(s) 1005
BtgZI GCGATG 2 cut(s) 16, 657
BtsCI GGATG 2 cut(s) 60, 202
BtsIMutI CAGTG 2 cut(s) 480, 1069
Cac8I GCNNGC 3 cut(s) 520, 702, 1166
CaiI CAGNNNCTG 2 cut(s) 244, 1170
CciI TCATGA 1 cut(s) 39
CfoI GCGC 3 cut(s) 53, 182, 678
Cfr13I GGNCC 2 cut(s) 109, 778
ClaI ATCGAT 1 cut(s) 1005
CseI GACGC 1 cut(s) 486
Csp6I GTAC 2 cut(s) 502, 1087
CspCI CAANNNNNGTGG 2 cut(s) 812, 847
CviAII CATG 7 cut(s) 40, 317, 505, 775, 853, 1091, 1161
CviQI GTAC 2 cut(s) 502, 1087
DdeI CTNAG 1 cut(s) 716
DinI GGCGCC 1 cut(s) 52
DpnI GATC 6 cut(s) 126, 176, 489, 510, 532, 837
DpnII GATC 6 cut(s) 124, 174, 487, 508, 530, 835
DraIII CACNNNGTG 1 cut(s) 497
DriI GACNNNNNGTC 1 cut(s) 940
Eam1104I CTCTTC 2 cut(s) 71, 265
Eam1105I GACNNNNNGTC 1 cut(s) 940
EarI CTCTTC 2 cut(s) 71, 265
Eco31I GGTCTC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 455
Eco72I CACGTG 1 cut(s) 628
Eco88I CYCGRG 2 cut(s) 794, 1134
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 201, 1094
EgeI GGCGCC 1 cut(s) 52
EheI GGCGCC 1 cut(s) 52
Esp3I CGTCTC 1 cut(s) 469
FaeI CATG 7 cut(s) 43, 320, 508, 778, 856, 1094, 1164
FalI AAGNNNNNCTT 2 cut(s) 639, 671
FaqI GGGAC 3 cut(s) 121, 992, 1039
FatI CATG 7 cut(s) 39, 316, 504, 774, 852, 1090, 1160
FauI CCCGC 1 cut(s) 1100
Fnu4HI GCNGC 8 cut(s) 49, 76, 242, 272, 283, 679, 766, 1024
FokI GGATG 2 cut(s) 47, 209
Fsp4HI GCNGC 8 cut(s) 49, 76, 242, 272, 283, 679, 766, 1024
FspBI CTAG 3 cut(s) 804, 813, 932
GlaI GCGC 3 cut(s) 52, 181, 677
GluI GCNGC 8 cut(s) 49, 76, 242, 272, 283, 679, 766, 1024
GsuI CTGGAG 1 cut(s) 504
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 1 cut(s) 779
HapII CCGG 1 cut(s) 311
HgaI GACGC 1 cut(s) 486
HhaI GCGC 3 cut(s) 53, 182, 678
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 7 cut(s) 43, 320, 508, 778, 856, 1094, 1164
Hin6I GCGC 3 cut(s) 51, 180, 676
HinP1I GCGC 3 cut(s) 51, 180, 676
HindIII AAGCTT 2 cut(s) 698, 710
HinfI GANTC 3 cut(s) 287, 349, 935
HpaII CCGG 1 cut(s) 311
HphI GGTGA 4 cut(s) 19, 133, 343, 811
Hpy166II GTNNAC 6 cut(s) 165, 342, 405, 502, 585, 599
Hpy188I TCNGA 2 cut(s) 292, 474
Hpy188III TCNNGA 5 cut(s) 40, 187, 250, 353, 512
Hpy8I GTNNAC 6 cut(s) 165, 342, 405, 502, 585, 599
Hpy99I CGWCG 1 cut(s) 764
HpyAV CCTTC 5 cut(s) 25, 34, 46, 64, 479
HpyCH4IV ACGT 4 cut(s) 627, 759, 1047, 1125
HpyCH4V TGCA 6 cut(s) 4, 75, 271, 580, 599, 1164
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 238, 1170
HpyF3I CTNAG 1 cut(s) 716
HpySE526I ACGT 4 cut(s) 627, 759, 1047, 1125
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 7 cut(s) 43, 320, 508, 778, 856, 1094, 1164
HspAI GCGC 3 cut(s) 51, 180, 676
KasI GGCGCC 1 cut(s) 50
Kzo9I GATC 6 cut(s) 124, 174, 487, 508, 530, 835
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 5 cut(s) 87, 253, 283, 665, 1035
LweI GCATC 4 cut(s) 187, 427, 1049, 1094
MaeI CTAG 3 cut(s) 804, 813, 932
MaeII ACGT 4 cut(s) 627, 759, 1047, 1125
MaeIII GTNAC 3 cut(s) 817, 907, 1064
MalI GATC 6 cut(s) 126, 176, 489, 510, 532, 837
MbiI CCGCTC 1 cut(s) 48
MboI GATC 6 cut(s) 124, 174, 487, 508, 530, 835
MboII GAAGA 9 cut(s) 49, 58, 61, 252, 255, 405, 581, 1113, 1218
MflI RGATCY 2 cut(s) 487, 508
MhlI GDGCHC 3 cut(s) 383, 601, 967
MluCI AATT 9 cut(s) 86, 145, 276, 358, 367, 619, 1016, 1034, 1120
Mly113I GGCGCC 1 cut(s) 51
MlyI GAGTC 1 cut(s) 929
MmeI TCCRAC 1 cut(s) 136
MseI TTAA 2 cut(s) 8, 1128
MslI CAYNNNNRTG 1 cut(s) 1159
MspA1I CMGCKG 1 cut(s) 244
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 2 cut(s) 203, 1096
MvaI CCWGG 2 cut(s) 203, 1096
MvnI CGCG 3 cut(s) 182, 282, 676
MwoI GCNNNNNNNGC 3 cut(s) 10, 238, 1170
NarI GGCGCC 1 cut(s) 51
NdeII GATC 6 cut(s) 124, 174, 487, 508, 530, 835
NlaIII CATG 7 cut(s) 43, 320, 508, 778, 856, 1094, 1164
NlaIV GGNNCC 2 cut(s) 52, 964
NmeAIII GCCGAG 1 cut(s) 1108
NmuCI GTSAC 3 cut(s) 817, 907, 1064
NspI RCATGY 1 cut(s) 320
PagI TCATGA 1 cut(s) 39
PfeI GAWTC 2 cut(s) 287, 349
PkrI GCNGC 8 cut(s) 50, 77, 243, 273, 284, 680, 767, 1025
PleI GAGTC 1 cut(s) 929
PluTI GGCGCC 1 cut(s) 54
PmaCI CACGTG 1 cut(s) 628
PmlI CACGTG 1 cut(s) 628
PpsI GAGTC 1 cut(s) 929
Ppu21I YACGTR 2 cut(s) 628, 1048
PshAI GACNNNNGTC 1 cut(s) 107
PsiI TTATAA 2 cut(s) 554, 639
Psp6I CCWGG 2 cut(s) 201, 1094
PspCI CACGTG 1 cut(s) 628
PspGI CCWGG 2 cut(s) 201, 1094
PspN4I GGNNCC 2 cut(s) 52, 964
PspPI GGNCC 2 cut(s) 109, 778
PstI CTGCAG 2 cut(s) 77, 273
PstNI CAGNNNCTG 2 cut(s) 244, 1170
PsuI RGATCY 2 cut(s) 487, 508
PvuII CAGCTG 1 cut(s) 244
RsaI GTAC 2 cut(s) 503, 1088
RsaNI GTAC 2 cut(s) 502, 1087
RseI CAYNNNNRTG 1 cut(s) 1159
SaqAI TTAA 2 cut(s) 8, 1128
SatI GCNGC 8 cut(s) 49, 76, 242, 272, 283, 679, 766, 1024
Sau3AI GATC 6 cut(s) 124, 174, 487, 508, 530, 835
Sau96I GGNCC 2 cut(s) 109, 778
SchI GAGTC 1 cut(s) 929
ScrFI CCNGG 2 cut(s) 203, 1096
SduI GDGCHC 3 cut(s) 383, 601, 967
SfaNI GCATC 4 cut(s) 187, 427, 1049, 1094
SfcI CTRYAG 2 cut(s) 73, 269
SfoI GGCGCC 1 cut(s) 52
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 1159
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
SpeI ACTAGT 1 cut(s) 812
Sse9I AATT 9 cut(s) 86, 145, 276, 358, 367, 619, 1016, 1034, 1120
SsiI CCGC 5 cut(s) 48, 150, 282, 765, 1107
SspDI GGCGCC 1 cut(s) 50
SspMI CTAG 3 cut(s) 804, 813, 932
StyD4I CCNGG 2 cut(s) 201, 1094
TaiI ACGT 4 cut(s) 630, 762, 1050, 1128
TaqI TCGA 6 cut(s) 84, 101, 616, 882, 998, 1005
TaqII GACCGA 1 cut(s) 97
TasI AATT 9 cut(s) 86, 145, 276, 358, 367, 619, 1016, 1034, 1120
TatI WGTACW 1 cut(s) 501
TauI GCSGC 3 cut(s) 51, 285, 768
TfiI GAWTC 2 cut(s) 287, 349
Tru1I TTAA 2 cut(s) 8, 1128
Tru9I TTAA 2 cut(s) 8, 1128
TscAI CASTG 2 cut(s) 487, 1069
TseFI GTSAC 3 cut(s) 817, 907, 1064
TseI GCWGC 5 cut(s) 75, 241, 271, 678, 1023
Tsp45I GTSAC 3 cut(s) 817, 907, 1064
TspDTI ATGAA 3 cut(s) 28, 49, 726
TspGWI ACGGA 2 cut(s) 123, 926
TspRI CASTG 2 cut(s) 487, 1069
VneI GTGCAC 1 cut(s) 597
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 3 cut(s) 86, 276, 1016
XceI RCATGY 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 737
XspI CTAG 3 cut(s) 804, 813, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.