Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001470.1

Orthogroup ID

OG0014607

Physical Location & Seq

Genomic Coordinates Forward (+)

66519 .. 72943

Gene Structure 6425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001470.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgccattgaagcccttcaactcctgcagcatcgccttcatgttgggtggcgcattcctcatcctcttcctctgtagcttcctcgaattcccttctctctccacctcaattcaccaacccccgatcgacgaccccactctctctctcacccactccgcccctgacccattcaccaatctcatctcttccttcagaaaatgggactctcaggtgggttgtgctcggttcacagaaaagcacaagtctttggcccaaaatgggtcttcttcttgttcttctctgcagcaaccatctgagtgtgggaagaagaagaagccgccgatggagcatgtcagcgttttggtcaaaggctggacttggattcctgataatctggacaatttgtattcctgctcatgtgggttgagctgtttgtggactaaatcgtctgttcttgctgacaaacctgatgccctgttgtttgagaccaccacccctccgcttcagagacgccatggagatccacttcgtgtgtacatggatcttgaggctggcaggaagcgatctggtgttgaggacttgtttgttagttatcatgccaaagacgatgtgcaggctacctatgctggtgccctctttcacaatggtcggaattatcacgtatcctcttacaaaaacaatgatacgcttatctattggtcatcctcacgttgtctgcctcaaagaaataagcttgccaagaggcttctcagcttactaccatcccattcattcggcaagtgcttgaataatgttggtggtttggacatggccctttctttctaccccgagtgtgccaatggtgctggtgatggcccccaaaaatggtgggaccatttacactgtgccatgtctcactataagtttgttctagcaattgaaaacacaatgacagagagttatgtgacagagaagctgttctatgctctagattctggtgcagttcctatctattttggtgcccctaatgtttgggactttgtccctccccattctataatagatggcagtaaattcagcaacctggaggatttggcttcttatgtaaaggcccttgccaatgacccagttgcttatgctgagtaccatgcatggagaagatgtggcttattgggcaactatgtaaaaactcgttcattgagccttgatacattgccttgcagactctgtgaggtagttgggagaaagggtgggagatatgcaagagagttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009987 GO:0010493 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046920 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_10

Protein Analysis

410

Amino Acids

45.75

Weight (kDa)

8.27

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71990
fragaria_vesca	FvH4_5g31230
malus_domestica	MD08G1220600.v1.1 MD15G1411300.v1.1
prunus_persica	Prupe.1G557500_v2.0.a1
pyrus_communis	pycom08g19140
rosa_chinensis	RchiOBHm_Chr7g0226481
rosa_laevigata	RLG00000001727
rosa_multiflora	Rmu_sc0001423.1_g000068 Rmu_sc0001470.1_g000012
rosa_roxburghii	Rroxscaffold_3G00232800
rosa_rugosa	Rorug07G0237400
rosa_samantha	Rh7AG384600 Rh7BG371400 Rh7CG403900 Rh7DG383500
rosa_wichuraiana	Rw7G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	424
AccB1I	GGYRCC	2 cut(s)	608, 977
AciI	CCGC	3 cut(s)	156, 317, 479
AclWI	GGATC	2 cut(s)	494, 528
AcsI	RAATTY	2 cut(s)	86, 1031
AcuI	CTGAAG	2 cut(s)	175, 467
AcyI	GRCGYC	1 cut(s)	490
AdeI	CACNNNGTG	1 cut(s)	509
AfaI	GTAC	2 cut(s)	515, 1103
AfiI	CCNNNNNNNGG	2 cut(s)	258, 843
AgsI	TTSAA	4 cut(s)	10, 19, 766, 899
AjnI	CCWGG	1 cut(s)	1041
AluBI	AGCT	5 cut(s)	78, 408, 712, 732, 934
AluI	AGCT	5 cut(s)	78, 408, 712, 732, 934
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	3 cut(s)	458, 481, 876
AlwI	GGATC	2 cut(s)	494, 528
AlwNI	CAGNNNCTG	1 cut(s)	1185
Ama87I	CYCGRG	1 cut(s)	806
AoxI	GGCC	4 cut(s)	249, 789, 832, 1068
ApeKI	GCWGC	2 cut(s)	27, 283
ApoI	RAATTY	2 cut(s)	86, 1031
Asp700I	GAANNNNTTC	2 cut(s)	14, 935
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	5 cut(s)	250, 790, 833, 850, 1069
AsuHPI	GGTGA	4 cut(s)	104, 139, 163, 839
AvaI	CYCGRG	1 cut(s)	806
AvaII	GGWCC	1 cut(s)	850
BaeGI	GKGCMC	2 cut(s)	613, 982
BanI	GGYRCC	2 cut(s)	608, 977
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	39, 295
BccI	CCATC	5 cut(s)	298, 316, 748, 824, 1016
BciT130I	CCWGG	1 cut(s)	1043
BciVI	GTATCC	1 cut(s)	652
BcoDI	GTCTC	3 cut(s)	458, 481, 876
BfaI	CTAG	2 cut(s)	890, 947
BfmI	CTRYAG	3 cut(s)	25, 73, 281
BfuI	GTATCC	1 cut(s)	652
BisI	GCNGC	3 cut(s)	28, 284, 317
BlsI	GCNGC	3 cut(s)	29, 285, 318
Bme1390I	CCNGG	1 cut(s)	1043
Bme18I	GGWCC	1 cut(s)	850
BmeT110I	CYCGRG	1 cut(s)	806
BmgT120I	GGNCC	5 cut(s)	250, 790, 833, 850, 1069
BmiI	GGNNCC	4 cut(s)	610, 835, 851, 979
BmrFI	CCNGG	1 cut(s)	1043
BmrI	ACTGGG	1 cut(s)	1079
BmsI	GCATC	2 cut(s)	39, 439
BmuI	ACTGGG	1 cut(s)	1079
BpiI	GAAGAC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	1064
BpuEI	CTTGAG	1 cut(s)	545
BsaAI	YACGTR	1 cut(s)	640
BsaHI	GRCGYC	1 cut(s)	490
BsaI	GGTCTC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	493
BsaXI	ACNNNNNCTCC	6 cut(s)	460, 490, 1105, 1135, 1192, 1222
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 843
Bse1I	ACTGG	1 cut(s)	1085
Bse3DI	GCAATG	1 cut(s)	1169
BseBI	CCWGG	1 cut(s)	1043
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	3 cut(s)	60, 680, 740
BseLI	CCNNNNNNNGG	2 cut(s)	258, 843
BseMI	GCAATG	1 cut(s)	1169
BseMII	CTCAG	4 cut(s)	221, 285, 742, 1089
BseNI	ACTGG	1 cut(s)	1085
BseSI	GKGCMC	2 cut(s)	613, 982
BseXI	GCAGC	2 cut(s)	39, 295
BsgI	GTGCAG	2 cut(s)	611, 978
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	4 cut(s)	251, 791, 834, 1070
BshNI	GGYRCC	2 cut(s)	608, 977
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	806
BslFI	GGGAC	4 cut(s)	215, 863, 986, 1007
BslI	CCNNNNNNNGG	2 cut(s)	258, 843
BsmAI	GTCTC	3 cut(s)	458, 481, 876
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	4 cut(s)	215, 863, 986, 1007
BsmI	GAATGC	1 cut(s)	53
BsnI	GGCC	4 cut(s)	251, 791, 834, 1070
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	806
Bsp1286I	GDGCHC	3 cut(s)	223, 613, 982
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	4 cut(s)	123, 499, 520, 542
Bsp19I	CCATGG	1 cut(s)	493
BspACI	CCGC	3 cut(s)	156, 317, 479
BspANI	GGCC	4 cut(s)	251, 791, 834, 1070
BspCNI	CTCAG	4 cut(s)	220, 286, 741, 1090
BspLI	GGNNCC	4 cut(s)	610, 835, 851, 979
BspMAI	CTGCAG	2 cut(s)	29, 285
BspPI	GGATC	2 cut(s)	494, 528
BspT107I	GGYRCC	2 cut(s)	608, 977
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	1 cut(s)	1169
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	1 cut(s)	1085
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	4 cut(s)	123, 499, 520, 542
BssNI	GRCGYC	1 cut(s)	490
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	1 cut(s)	1043
Bst4CI	ACNGT	1 cut(s)	863
Bst6I	CTCTTC	2 cut(s)	71, 190
BstACI	GRCGYC	1 cut(s)	490
BstAUI	TGTACA	1 cut(s)	513
BstBAI	YACGTR	1 cut(s)	640
BstC8I	GCNNGC	3 cut(s)	532, 594, 714
BstDEI	CTNAG	4 cut(s)	207, 294, 728, 1098
BstDSI	CCRYGG	1 cut(s)	493
BstF5I	GGATG	3 cut(s)	60, 680, 740
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	4 cut(s)	126, 502, 523, 545
BstMAI	GTCTC	3 cut(s)	458, 481, 876
BstMBI	GATC	4 cut(s)	123, 499, 520, 542
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 325, 602, 821, 1131
BstNI	CCWGG	1 cut(s)	1043
BstNSI	RCATGY	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	1041
BstSFI	CTRYAG	3 cut(s)	25, 73, 281
BstSLI	GKGCMC	2 cut(s)	613, 982
BstV1I	GCAGC	2 cut(s)	39, 295
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	2 cut(s)	499, 520
BstYI	RGATCY	2 cut(s)	499, 520
BsuI	GTATCC	1 cut(s)	652
BsuRI	GGCC	4 cut(s)	251, 791, 834, 1070
BtgI	CCRYGG	1 cut(s)	493
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	60, 680, 740
BtsIMutI	CAGTG	1 cut(s)	859
Cac8I	GCNNGC	3 cut(s)	532, 594, 714
CaiI	CAGNNNCTG	1 cut(s)	1185
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	5 cut(s)	250, 790, 833, 850, 1069
CseI	GACGC	1 cut(s)	498
Csp6I	GTAC	2 cut(s)	514, 1102
CspCI	CAANNNNNGTGG	2 cut(s)	827, 862
CviQI	GTAC	2 cut(s)	514, 1102
DdeI	CTNAG	4 cut(s)	207, 294, 728, 1098
DpnI	GATC	4 cut(s)	125, 501, 522, 544
DpnII	GATC	4 cut(s)	123, 499, 520, 542
DraIII	CACNNNGTG	1 cut(s)	509
DrdI	GACNNNNNNGTC	1 cut(s)	424
DseDI	GACNNNNNNGTC	1 cut(s)	424
Eam1104I	CTCTTC	2 cut(s)	71, 190
EarI	CTCTTC	2 cut(s)	71, 190
EciI	GGCGGA	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	493
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	1 cut(s)	850
Eco57I	CTGAAG	2 cut(s)	175, 467
Eco88I	CYCGRG	1 cut(s)	806
EcoO109I	RGGNCCY	1 cut(s)	1069
EcoRI	GAATTC	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	1041
EcoT14I	CCWWGG	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	1111
ErhI	CCWWGG	1 cut(s)	493
Esp3I	CGTCTC	1 cut(s)	481
FaqI	GGGAC	4 cut(s)	215, 863, 986, 1007
Fnu4HI	GCNGC	3 cut(s)	28, 284, 317
FokI	GGATG	3 cut(s)	47, 667, 727
Fsp4HI	GCNGC	3 cut(s)	28, 284, 317
FspBI	CTAG	2 cut(s)	890, 947
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	3 cut(s)	28, 284, 317
GsuI	CTGGAG	1 cut(s)	1064
HaeIII	GGCC	4 cut(s)	251, 791, 834, 1070
HgaI	GACGC	1 cut(s)	498
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	490
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	710
HinfI	GANTC	4 cut(s)	203, 361, 950, 1182
HphI	GGTGA	4 cut(s)	104, 139, 163, 839
Hpy166II	GTNNAC	3 cut(s)	228, 417, 514
Hpy188I	TCNGA	4 cut(s)	194, 295, 486, 630
Hpy188III	TCNNGA	4 cut(s)	365, 374, 524, 947
Hpy8I	GTNNAC	3 cut(s)	228, 417, 514
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	4 cut(s)	25, 46, 102, 199
HpyCH4III	ACNGT	1 cut(s)	863
HpyCH4IV	ACGT	2 cut(s)	639, 688
HpyCH4V	TGCA	7 cut(s)	27, 283, 592, 959, 1109, 1179, 1220
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 325, 602, 821, 1131
HpyF3I	CTNAG	4 cut(s)	207, 294, 728, 1098
HpySE526I	ACGT	2 cut(s)	639, 688
Hsp92I	GRCGYC	1 cut(s)	490
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	4 cut(s)	123, 499, 520, 542
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	2 cut(s)	39, 295
LweI	GCATC	2 cut(s)	39, 439
MaeI	CTAG	2 cut(s)	890, 947
MaeII	ACGT	2 cut(s)	639, 688
MaeIII	GTNAC	1 cut(s)	922
MalI	GATC	4 cut(s)	125, 501, 522, 544
MboI	GATC	4 cut(s)	123, 499, 520, 542
MboII	GAAGA	9 cut(s)	58, 177, 255, 258, 267, 316, 319, 322, 1128
MfeI	CAATTG	1 cut(s)	894
MflI	RGATCY	2 cut(s)	499, 520
MhlI	GDGCHC	3 cut(s)	223, 613, 982
MluCI	AATT	6 cut(s)	86, 108, 379, 631, 894, 1031
MlyI	GAGTC	2 cut(s)	197, 1176
MmeI	TCCRAC	1 cut(s)	608
Mph1103I	ATGCAT	1 cut(s)	1111
MroXI	GAANNNNTTC	2 cut(s)	14, 935
MslI	CAYNNNNRTG	1 cut(s)	295
MspR9I	CCNGG	1 cut(s)	1043
MunI	CAATTG	1 cut(s)	894
Mva1269I	GAATGC	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	1043
MwoI	GCNNNNNNNGC	5 cut(s)	10, 325, 602, 821, 1131
NcoI	CCATGG	1 cut(s)	493
NdeII	GATC	4 cut(s)	123, 499, 520, 542
NlaIV	GGNNCC	4 cut(s)	610, 835, 851, 979
NmuCI	GTSAC	1 cut(s)	922
NsiI	ATGCAT	1 cut(s)	1111
NspI	RCATGY	1 cut(s)	332
PctI	GAATGC	1 cut(s)	53
PdmI	GAANNNNTTC	2 cut(s)	14, 935
PfeI	GAWTC	2 cut(s)	361, 950
PflFI	GACNNNGTC	1 cut(s)	998
PkrI	GCNGC	3 cut(s)	29, 285, 318
Ple19I	CGATCG	1 cut(s)	126
PleI	GAGTC	2 cut(s)	197, 1176
PpsI	GAGTC	2 cut(s)	197, 1176
Ppu21I	YACGTR	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	1041
PspGI	CCWGG	1 cut(s)	1041
PspN4I	GGNNCC	4 cut(s)	610, 835, 851, 979
PspPI	GGNCC	5 cut(s)	250, 790, 833, 850, 1069
PstI	CTGCAG	2 cut(s)	29, 285
PstNI	CAGNNNCTG	1 cut(s)	1185
PsuI	RGATCY	2 cut(s)	499, 520
PsyI	GACNNNGTC	1 cut(s)	998
PvuI	CGATCG	1 cut(s)	126
RsaI	GTAC	2 cut(s)	515, 1103
RsaNI	GTAC	2 cut(s)	514, 1102
RseI	CAYNNNNRTG	1 cut(s)	295
SatI	GCNGC	3 cut(s)	28, 284, 317
Sau3AI	GATC	4 cut(s)	123, 499, 520, 542
Sau96I	GGNCC	5 cut(s)	250, 790, 833, 850, 1069
SchI	GAGTC	2 cut(s)	197, 1176
ScrFI	CCNGG	1 cut(s)	1043
SduI	GDGCHC	3 cut(s)	223, 613, 982
SfaNI	GCATC	2 cut(s)	39, 439
SfcI	CTRYAG	3 cut(s)	25, 73, 281
SinI	GGWCC	1 cut(s)	850
SmiMI	CAYNNNNRTG	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	6 cut(s)	86, 108, 379, 631, 894, 1031
SsiI	CCGC	3 cut(s)	156, 317, 479
SspMI	CTAG	2 cut(s)	890, 947
StyD4I	CCNGG	1 cut(s)	1041
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	1 cut(s)	863
TaiI	ACGT	2 cut(s)	642, 691
TaqI	TCGA	2 cut(s)	84, 126
TasI	AATT	6 cut(s)	86, 108, 379, 631, 894, 1031
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	2 cut(s)	361, 950
TscAI	CASTG	1 cut(s)	866
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	2 cut(s)	27, 283
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	3 cut(s)	28, 738, 1143
TspRI	CASTG	1 cut(s)	866
Tth111I	GACNNNGTC	1 cut(s)	998
VpaK11BI	GGWCC	1 cut(s)	850
XapI	RAATTY	2 cut(s)	86, 1031
XbaI	TCTAGA	1 cut(s)	946
XceI	RCATGY	1 cut(s)	332
XmnI	GAANNNNTTC	2 cut(s)	14, 935
XspI	CTAG	2 cut(s)	890, 947
Zsp2I	ATGCAT	1 cut(s)	1111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.