Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014607

Physical Location & Seq

Genomic Coordinates Reverse (-)

51072200 .. 51078010

Gene Structure 5811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1411300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCAATTAAAGCCCTTCAACTCCTTCAGCATCGCCTTCATGATGAGCGGCGCACTCTTGCTCGTTTTCTTCTGCAGCTTCCTCGAATTCCCTTTTCTATCAACCTCAATCAAACCCATCAACGATCCGACCAAGTTCACACCCGACCCCTTTACCAACTTGATCGGCGCCTTCAGGAAGTGGGATGCCCAAGTGGGTTGCTCTCGTTTCAGAGAGAAGCACAAGCTGCAGATGTTGCAGAACAAGTCTTCTTCTCTGCAACAAATTCGCGGCGAATCGGAGTGTGGGGAGGCGAAATCGGAGCATGTTAGCGTGCTGGTGAAAGGGTGGACTTGGATTCCTGATAATTTGGATAGTTTGTATTCATGCTCGTGTGGGTTGAGCTGTTTGTGGACTAAATCTCCTGTTCTTGCTGACAAGCCTGATGCTTTGCTGTTTGAGACTACTACACCTCCCCTTCAGAGACACAGTGGAGATCCACTTCGCGTGTACATGGATCTTGAGGCTGGCAGGAAGCGATCTGGTGTTGAGGATATATTTATAAGTTATCACGCCAAAGATGATGTGCAATCCACCTATGCCGGTGCACTCTTTCACAATGGTCGAAATTATCACGTGTCTCCCTATAAAAACAATGATACACTTGTTTATTGGTCATCATCACGCTGTCTGTCTCAAAGAAATATTCTTGCCCATAAGCTTCTCAGCTTACTACCTCACCATTCATTCGGCAAGTGCTTGAACAACGTCGGTGGCTTGGACATGGCCCTTTCTTTCTACCCCGATTGTGCCGGTGATACGGCCACCCAGAAATGGTGGGACCATTTGCATTGTGCCATGTCTCACTATAAGTTTGTTCTTGCTATCGAAAACACAATGACAGAGAGTTACGTGACGGAGAAGCTATTTTATGCCCTAGATTCCGGTTCAGTTCCAATCTACTTTGGTGCCCCTAATGTCTGGGACTTTGTTCCTCCCCATTCGATAATCGATGGCACTAAATTTAAGAGCTTGGAGGAATTGGCGTCTTACGTGAAGTCCCTCGCCAACGACCCAGTTGCGTATGCCGAGTACCATGCGTGGCGAAGATGCGGGGTAATGGCGAATTACGTCAAAACCCGCGCATTGAGCCTCGACACATTACCATGCAGACTCTGCGAAGCTGTTAGCAGAAAAGGTGGGAGAAATGGAAGAACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009987 GO:0010493 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046920 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_10

Protein Analysis

401

Amino Acids

45.11

Weight (kDa)

8.46

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_10	PF00852	211 - 393	1.7e-30	Glycosyltransferase family 10 (fucosyltransferase) C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71990
fragaria_vesca	FvH4_5g31230
malus_domestica	MD08G1220600.v1.1 MD15G1411300.v1.1
prunus_persica	Prupe.1G557500_v2.0.a1
pyrus_communis	pycom08g19140
rosa_chinensis	RchiOBHm_Chr7g0226481
rosa_laevigata	RLG00000001727
rosa_multiflora	Rmu_sc0001423.1_g000068 Rmu_sc0001470.1_g000012
rosa_roxburghii	Rroxscaffold_3G00232800
rosa_rugosa	Rorug07G0237400
rosa_samantha	Rh7AG384600 Rh7BG371400 Rh7CG403900 Rh7DG383500
rosa_wichuraiana	Rw7G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	542
AccB1I	GGYRCC	2 cut(s)	167, 947
AccBSI	CCGCTC	1 cut(s)	48
AccII	CGCG	3 cut(s)	270, 486, 1122
AciI	CCGC	4 cut(s)	48, 270, 1092, 1120
AclWI	GGATC	3 cut(s)	119, 470, 504
AcoI	YGGCCR	1 cut(s)	801
AcsI	RAATTY	3 cut(s)	86, 264, 1001
AcuI	CTGAAG	3 cut(s)	10, 157, 443
AcvI	CACGTG	1 cut(s)	616
AcyI	GRCGYC	2 cut(s)	168, 1025
AfaI	GTAC	2 cut(s)	491, 1073
AfiI	CCNNNNNNNGG	1 cut(s)	813
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	2 cut(s)	19, 742
AluBI	AGCT	8 cut(s)	78, 226, 384, 700, 708, 904, 1011, 1163
AluI	AGCT	8 cut(s)	78, 226, 384, 700, 708, 904, 1011, 1163
Alw21I	GWGCWC	1 cut(s)	589
Alw26I	GTCTC	5 cut(s)	434, 457, 624, 678, 846
Alw44I	GTGCAC	1 cut(s)	585
AlwI	GGATC	3 cut(s)	119, 470, 504
AlwNI	CAGNNNCTG	1 cut(s)	1155
AoxI	GGCC	2 cut(s)	765, 801
ApaLI	GTGCAC	1 cut(s)	585
ApeKI	GCWGC	2 cut(s)	75, 226
ApoI	RAATTY	3 cut(s)	86, 264, 1001
AspLEI	GCGC	3 cut(s)	53, 170, 1124
AspS9I	GGNCC	2 cut(s)	766, 820
AsuHPI	GGTGA	3 cut(s)	331, 710, 806
AvaII	GGWCC	1 cut(s)	820
BaeGI	GKGCMC	2 cut(s)	589, 952
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BanI	GGYRCC	2 cut(s)	167, 947
BauI	CACGAG	1 cut(s)	370
BbrPI	CACGTG	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	589
BbvI	GCAGC	2 cut(s)	87, 213
BccI	CCATC	2 cut(s)	125, 986
BceAI	ACGGC	1 cut(s)	816
BcgI	CGANNNNNNTGC	8 cut(s)	64, 98, 248, 282, 1040, 1058, 1074, 1092
BcoDI	GTCTC	5 cut(s)	434, 457, 624, 678, 846
BfaI	CTAG	1 cut(s)	917
BfmI	CTRYAG	2 cut(s)	73, 227
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	4 cut(s)	49, 76, 227, 271
BlsI	GCNGC	4 cut(s)	50, 77, 228, 272
Bme18I	GGWCC	1 cut(s)	820
BmgT120I	GGNCC	2 cut(s)	766, 820
BmiI	GGNNCC	3 cut(s)	169, 821, 949
BmrI	ACTGGG	1 cut(s)	1049
BmsI	GCATC	4 cut(s)	39, 175, 415, 1079
BmuI	ACTGGG	1 cut(s)	1049
BpiI	GAAGAC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	521
Bsa29I	ATCGAT	1 cut(s)	990
BsaAI	YACGTR	3 cut(s)	616, 892, 1033
BsaHI	GRCGYC	2 cut(s)	168, 1025
BsaWI	WCCGGW	1 cut(s)	923
BsaXI	ACNNNNNCTCC	4 cut(s)	385, 415, 436, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	813
Bse118I	RCCGGY	2 cut(s)	581, 791
Bse1I	ACTGG	1 cut(s)	1055
BseCI	ATCGAT	1 cut(s)	990
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	1 cut(s)	813
BseMII	CTCAG	1 cut(s)	718
BseNI	ACTGG	1 cut(s)	1055
BseSI	GKGCMC	2 cut(s)	589, 952
BseXI	GCAGC	2 cut(s)	87, 213
Bsh1236I	CGCG	3 cut(s)	270, 486, 1122
BshFI	GGCC	2 cut(s)	767, 803
BshNI	GGYRCC	2 cut(s)	167, 947
BshVI	ATCGAT	1 cut(s)	990
BsiHKAI	GWGCWC	1 cut(s)	589
BsiSI	CCGG	3 cut(s)	582, 792, 924
BslFI	GGGAC	3 cut(s)	833, 977, 1024
BslI	CCNNNNNNNGG	1 cut(s)	813
BsmAI	GTCTC	5 cut(s)	434, 457, 624, 678, 846
BsmFI	GGGAC	3 cut(s)	833, 977, 1024
BsnI	GGCC	2 cut(s)	767, 803
Bsp1286I	GDGCHC	2 cut(s)	589, 952
Bsp1407I	TGTACA	1 cut(s)	489
Bsp143I	GATC	5 cut(s)	124, 162, 475, 496, 518
BspACI	CCGC	4 cut(s)	48, 270, 1092, 1120
BspANI	GGCC	2 cut(s)	767, 803
BspCNI	CTCAG	1 cut(s)	717
BspDI	ATCGAT	1 cut(s)	990
BspFNI	CGCG	3 cut(s)	270, 486, 1122
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	169, 821, 949
BspMAI	CTGCAG	2 cut(s)	77, 231
BspPI	GGATC	3 cut(s)	119, 470, 504
BspT107I	GGYRCC	2 cut(s)	167, 947
BsrBI	CCGCTC	1 cut(s)	48
BsrFI	RCCGGY	2 cut(s)	581, 791
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	1055
BssAI	RCCGGY	2 cut(s)	581, 791
BssMI	GATC	5 cut(s)	124, 162, 475, 496, 518
BssNI	GRCGYC	2 cut(s)	168, 1025
BssSI	CACGAG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	370
Bst4CI	ACNGT	1 cut(s)	470
BstACI	GRCGYC	2 cut(s)	168, 1025
BstAPI	GCANNNNNTGC	3 cut(s)	226, 235, 1155
BstAUI	TGTACA	1 cut(s)	489
BstBAI	YACGTR	3 cut(s)	616, 892, 1033
BstC8I	GCNNGC	2 cut(s)	314, 508
BstDEI	CTNAG	1 cut(s)	704
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	3 cut(s)	270, 486, 1122
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	3 cut(s)	53, 170, 1124
BstKTI	GATC	5 cut(s)	127, 165, 478, 499, 521
BstMAI	GTCTC	5 cut(s)	434, 457, 624, 678, 846
BstMBI	GATC	5 cut(s)	124, 162, 475, 496, 518
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 226, 235, 1128, 1155
BstNSI	RCATGY	1 cut(s)	308
BstSFI	CTRYAG	2 cut(s)	73, 227
BstSLI	GKGCMC	2 cut(s)	589, 952
BstUI	CGCG	3 cut(s)	270, 486, 1122
BstV1I	GCAGC	2 cut(s)	87, 213
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	475, 496
BstYI	RGATCY	2 cut(s)	475, 496
Bsu15I	ATCGAT	1 cut(s)	990
BsuRI	GGCC	2 cut(s)	767, 803
BsuTUI	ATCGAT	1 cut(s)	990
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	314, 508
CaiI	CAGNNNCTG	1 cut(s)	1155
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	3 cut(s)	53, 170, 1124
Cfr10I	RCCGGY	2 cut(s)	581, 791
Cfr13I	GGNCC	2 cut(s)	766, 820
ClaI	ATCGAT	1 cut(s)	990
CseI	GACGC	1 cut(s)	1014
Csp6I	GTAC	2 cut(s)	490, 1072
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
CviAII	CATG	8 cut(s)	40, 305, 366, 493, 763, 838, 1076, 1146
CviQI	GTAC	2 cut(s)	490, 1072
DdeI	CTNAG	1 cut(s)	704
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	5 cut(s)	126, 164, 477, 498, 520
DpnII	GATC	5 cut(s)	124, 162, 475, 496, 518
EaeI	YGGCCR	1 cut(s)	801
Eco47I	GGWCC	1 cut(s)	820
Eco57I	CTGAAG	3 cut(s)	10, 157, 443
Eco72I	CACGTG	1 cut(s)	616
EcoRI	GAATTC	1 cut(s)	86
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaeI	CATG	8 cut(s)	43, 308, 369, 496, 766, 841, 1079, 1149
FaqI	GGGAC	3 cut(s)	833, 977, 1024
FatI	CATG	8 cut(s)	39, 304, 365, 492, 762, 837, 1075, 1145
FauI	CCCGC	2 cut(s)	1085, 1127
Fnu4HI	GCNGC	4 cut(s)	49, 76, 227, 271
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	4 cut(s)	49, 76, 227, 271
FspBI	CTAG	1 cut(s)	917
GlaI	GCGC	3 cut(s)	52, 169, 1123
GluI	GCNGC	4 cut(s)	49, 76, 227, 271
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	2 cut(s)	767, 803
HapII	CCGG	3 cut(s)	582, 792, 924
HgaI	GACGC	1 cut(s)	1014
HhaI	GCGC	3 cut(s)	53, 170, 1124
Hin1I	GRCGYC	2 cut(s)	168, 1025
Hin1II	CATG	8 cut(s)	43, 308, 369, 496, 766, 841, 1079, 1149
Hin6I	GCGC	3 cut(s)	51, 168, 1122
HinP1I	GCGC	3 cut(s)	51, 168, 1122
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	4 cut(s)	275, 337, 920, 1152
HpaII	CCGG	3 cut(s)	582, 792, 924
HphI	GGTGA	3 cut(s)	331, 710, 806
Hpy166II	GTNNAC	5 cut(s)	138, 330, 393, 490, 587
Hpy188I	TCNGA	5 cut(s)	129, 212, 280, 301, 462
Hpy188III	TCNNGA	4 cut(s)	40, 175, 341, 500
Hpy8I	GTNNAC	5 cut(s)	138, 330, 393, 490, 587
Hpy99I	CGWCG	1 cut(s)	752
HpyAV	CCTTC	5 cut(s)	25, 34, 46, 181, 467
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	5 cut(s)	615, 747, 891, 1032, 1110
HpyCH4V	TGCA	9 cut(s)	4, 75, 229, 238, 259, 568, 587, 829, 1149
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 226, 235, 1128, 1155
HpyF3I	CTNAG	1 cut(s)	704
HpySE526I	ACGT	5 cut(s)	615, 747, 891, 1032, 1110
Hsp92I	GRCGYC	2 cut(s)	168, 1025
Hsp92II	CATG	8 cut(s)	43, 308, 369, 496, 766, 841, 1079, 1149
HspAI	GCGC	3 cut(s)	51, 168, 1122
KasI	GGCGCC	1 cut(s)	167
Kzo9I	GATC	5 cut(s)	124, 162, 475, 496, 518
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	2 cut(s)	87, 213
LweI	GCATC	4 cut(s)	39, 175, 415, 1079
MaeI	CTAG	1 cut(s)	917
MaeII	ACGT	5 cut(s)	615, 747, 891, 1032, 1110
MaeIII	GTNAC	2 cut(s)	887, 892
MalI	GATC	5 cut(s)	126, 164, 477, 498, 520
MbiI	CCGCTC	1 cut(s)	48
MboI	GATC	5 cut(s)	124, 162, 475, 496, 518
MboII	GAAGA	5 cut(s)	61, 240, 243, 1098, 1203
MflI	RGATCY	2 cut(s)	475, 496
MhlI	GDGCHC	2 cut(s)	589, 952
MluCI	AATT	8 cut(s)	5, 86, 264, 346, 607, 1001, 1019, 1105
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	1146
MmeI	TCCRAC	1 cut(s)	152
MseI	TTAA	2 cut(s)	8, 1005
MslI	CAYNNNNRTG	2 cut(s)	370, 1144
MspI	CCGG	3 cut(s)	582, 792, 924
MvnI	CGCG	3 cut(s)	270, 486, 1122
MwoI	GCNNNNNNNGC	5 cut(s)	10, 226, 235, 1128, 1155
NarI	GGCGCC	1 cut(s)	168
NdeII	GATC	5 cut(s)	124, 162, 475, 496, 518
NlaIII	CATG	8 cut(s)	43, 308, 369, 496, 766, 841, 1079, 1149
NlaIV	GGNNCC	3 cut(s)	169, 821, 949
NmeAIII	GCCGAG	1 cut(s)	1093
NmuCI	GTSAC	1 cut(s)	892
NspI	RCATGY	1 cut(s)	308
PagI	TCATGA	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	275, 337, 920
PkrI	GCNGC	4 cut(s)	50, 77, 228, 272
PleI	GAGTC	1 cut(s)	1146
PluTI	GGCGCC	1 cut(s)	171
PmaCI	CACGTG	1 cut(s)	616
PmlI	CACGTG	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	1146
Ppu21I	YACGTR	3 cut(s)	616, 892, 1033
PsiI	TTATAA	1 cut(s)	542
PspCI	CACGTG	1 cut(s)	616
PspN4I	GGNNCC	3 cut(s)	169, 821, 949
PspPI	GGNCC	2 cut(s)	766, 820
PstI	CTGCAG	2 cut(s)	77, 231
PstNI	CAGNNNCTG	1 cut(s)	1155
PsuI	RGATCY	2 cut(s)	475, 496
RsaI	GTAC	2 cut(s)	491, 1073
RsaNI	GTAC	2 cut(s)	490, 1072
RseI	CAYNNNNRTG	2 cut(s)	370, 1144
SaqAI	TTAA	2 cut(s)	8, 1005
SatI	GCNGC	4 cut(s)	49, 76, 227, 271
Sau3AI	GATC	5 cut(s)	124, 162, 475, 496, 518
Sau96I	GGNCC	2 cut(s)	766, 820
SchI	GAGTC	1 cut(s)	1146
SduI	GDGCHC	2 cut(s)	589, 952
SfaNI	GCATC	4 cut(s)	39, 175, 415, 1079
SfcI	CTRYAG	2 cut(s)	73, 227
SfoI	GGCGCC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	820
SmiMI	CAYNNNNRTG	2 cut(s)	370, 1144
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
Sse9I	AATT	8 cut(s)	5, 86, 264, 346, 607, 1001, 1019, 1105
SsiI	CCGC	4 cut(s)	48, 270, 1092, 1120
SspDI	GGCGCC	1 cut(s)	167
SspI	AATATT	1 cut(s)	685
SspMI	CTAG	1 cut(s)	917
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	5 cut(s)	618, 750, 894, 1035, 1113
TaqI	TCGA	6 cut(s)	84, 604, 867, 983, 990, 1134
TasI	AATT	8 cut(s)	5, 86, 264, 346, 607, 1001, 1019, 1105
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	2 cut(s)	51, 273
TfiI	GAWTC	3 cut(s)	275, 337, 920
Tru1I	TTAA	2 cut(s)	8, 1005
Tru9I	TTAA	2 cut(s)	8, 1005
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	892
TseI	GCWGC	2 cut(s)	75, 226
Tsp45I	GTSAC	1 cut(s)	892
TspDTI	ATGAA	3 cut(s)	28, 354, 714
TspGWI	ACGGA	1 cut(s)	911
TspRI	CASTG	1 cut(s)	475
VneI	GTGCAC	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	820
XapI	RAATTY	3 cut(s)	86, 264, 1001
XceI	RCATGY	1 cut(s)	308
XspI	CTAG	1 cut(s)	917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.