Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0014607

Physical Location & Seq

Genomic Coordinates Forward (+)

21756824 .. 21757282

Gene Structure 459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0237400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCAGGCCGCAAAGGAAAAGCTTAGCAATCTGGCCAGCTCGGCCAAGGAGCACGTCAATATCTACAAAGCCAAAGTACAAGAAAAGTTGGAGAGAGCAAAAGCTAGGAATAAGGAAGAGAAGAAGATGGTGAGAGAGCGTCGGAAAGTGAAGGAGGCGAGTGCAAAGATGGAGCTGCATAAAGCTAAAGCCAGGCATGCAGAGAAGAAATTAGGTGCCAAACTATCTCATGGGCATGGGATATTCAACTATCACCACCCACCACCAGCACCACTTCATAATCATCAACATCAACATGGGCACCAGCATCTGGGAACAACTAATATGATCCCTTCAAATCCGCATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0008417 GO:0009058 GO:0009059 GO:0009987 GO:0010493 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0031090 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0036065 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046920 GO:0070085 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901137 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00513 ko01100 map00513 map01100

Pfam Domains

Protein Families

Glyco_transf_10

Protein Analysis

116

Amino Acids

13.24

Weight (kDa)

10.26

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_1	PF03760	1 - 70	2.7e-22	Late embryogenesis abundant (LEA) group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014607)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71990
fragaria_vesca	FvH4_5g31230
malus_domestica	MD08G1220600.v1.1 MD15G1411300.v1.1
prunus_persica	Prupe.1G557500_v2.0.a1
pyrus_communis	pycom08g19140
rosa_chinensis	RchiOBHm_Chr7g0226481
rosa_laevigata	RLG00000001727
rosa_multiflora	Rmu_sc0001423.1_g000068 Rmu_sc0001470.1_g000012
rosa_roxburghii	Rroxscaffold_3G00232800
rosa_rugosa	Rorug07G0237400
rosa_samantha	Rh7AG384600 Rh7BG371400 Rh7CG403900 Rh7DG383500
rosa_wichuraiana	Rw7G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	215, 300
AccB7I	CCANNNNNTGG	1 cut(s)	310
AciI	CCGC	2 cut(s)	9, 341
AclWI	GGATC	1 cut(s)	322
AcoI	YGGCCR	2 cut(s)	33, 42
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	2 cut(s)	247, 336
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	5 cut(s)	22, 39, 104, 175, 185
AluI	AGCT	5 cut(s)	22, 39, 104, 175, 185
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	322
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	3 cut(s)	6, 33, 42
ApeKI	GCWGC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	142, 245
BaeGI	GKGCMC	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	35
BanI	GGYRCC	2 cut(s)	215, 300
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	121, 163
BciT130I	CCWGG	1 cut(s)	193
BfaI	CTAG	1 cut(s)	105
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	2 cut(s)	9, 176
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	2 cut(s)	10, 177
Bme1390I	CCNGG	1 cut(s)	193
BmgBI	CACGTC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	217, 302
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	316
Bpu1102I	GCTNAGC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	162
BshFI	GGCC	3 cut(s)	8, 35, 44
BshNI	GGYRCC	2 cut(s)	215, 300
BsiHKAI	GWGCWC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	310
BsnI	GGCC	3 cut(s)	8, 35, 44
Bsp1286I	GDGCHC	2 cut(s)	54, 303
Bsp143I	GATC	1 cut(s)	327
Bsp1720I	GCTNAGC	1 cut(s)	23
BspACI	CCGC	2 cut(s)	9, 341
BspANI	GGCC	3 cut(s)	8, 35, 44
BspLI	GGNNCC	2 cut(s)	217, 302
BspPI	GGATC	1 cut(s)	322
BspT107I	GGYRCC	2 cut(s)	215, 300
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	45
Bst2UI	CCWGG	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	3 cut(s)	6, 37, 198
BstDEI	CTNAG	1 cut(s)	23
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 197
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	2 cut(s)	200, 347
BstSCI	CCNGG	1 cut(s)	191
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	8, 35, 44
BtrI	CACGTC	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	6, 37, 198
CaiI	CAGNNNCTG	1 cut(s)	310
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	5 cut(s)	197, 230, 236, 296, 344
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	1 cut(s)	23
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
EaeI	YGGCCR	2 cut(s)	33, 42
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	5 cut(s)	200, 233, 239, 299, 347
FaiI	YATR	8 cut(s)	180, 198, 231, 237, 279, 297, 326, 345
FatI	CATG	5 cut(s)	196, 229, 235, 295, 343
Fnu4HI	GCNGC	2 cut(s)	9, 176
Fsp4HI	GCNGC	2 cut(s)	9, 176
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	2 cut(s)	9, 176
HaeIII	GGCC	3 cut(s)	8, 35, 44
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	5 cut(s)	200, 233, 239, 299, 347
HindIII	AAGCTT	1 cut(s)	20
HphI	GGTGA	2 cut(s)	142, 245
Hpy188I	TCNGA	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	2 cut(s)	145, 342
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	4 cut(s)	4, 164, 178, 200
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 197
HpyF3I	CTNAG	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	5 cut(s)	200, 233, 239, 299, 347
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	49, 172
LpnPI	CCDG	7 cut(s)	17, 49, 178, 205, 279, 296, 317
Lsp1109I	GCAGC	1 cut(s)	162
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	54
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	4 cut(s)	128, 133, 136, 217
MhlI	GDGCHC	2 cut(s)	54, 303
MlsI	TGGCCA	1 cut(s)	35
MluCI	AATT	1 cut(s)	209
MluNI	TGGCCA	1 cut(s)	35
MmeI	TCCRAC	2 cut(s)	69, 122
MnlI	CCTC	1 cut(s)	148
Mox20I	TGGCCA	1 cut(s)	35
MscI	TGGCCA	1 cut(s)	35
MslI	CAYNNNNRTG	2 cut(s)	234, 294
Msp20I	TGGCCA	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	41, 197
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	5 cut(s)	200, 233, 239, 299, 347
NlaIV	GGNNCC	2 cut(s)	217, 302
NmeAIII	GCCGAG	1 cut(s)	20
NspI	RCATGY	2 cut(s)	200, 347
PaeI	GCATGC	1 cut(s)	200
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	2 cut(s)	10, 177
Psp6I	CCWGG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	217, 302
PstNI	CAGNNNCTG	1 cut(s)	310
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
RseI	CAYNNNNRTG	2 cut(s)	234, 294
SatI	GCNGC	2 cut(s)	9, 176
Sau3AI	GATC	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	193
SduI	GDGCHC	2 cut(s)	54, 303
SetI	ASST	7 cut(s)	24, 41, 57, 106, 177, 187, 217
SfaNI	GCATC	1 cut(s)	316
SfiI	GGCCNNNNNGGCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	234, 294
SphI	GCATGC	1 cut(s)	200
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	2 cut(s)	9, 341
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	191
StyI	CCWWGG	1 cut(s)	45
TaiI	ACGT	1 cut(s)	57
TasI	AATT	1 cut(s)	209
TatI	WGTACW	1 cut(s)	76
TauI	GCSGC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	266
Van91I	CCANNNNNTGG	1 cut(s)	310
XceI	RCATGY	2 cut(s)	200, 347
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.