Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017046

Physical Location & Seq

Genomic Coordinates Reverse (-)

27339114 .. 27340044

Gene Structure 931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTTGCGTACTATCTTCCTCTTATCTCTTCTCTTTGCTCTATCCAATGCCTCTGTTCAAGATTTCTGTGTCGCAAACCTGAAACGCGCTGAAACCCCTGCGGGTTACCCTTGCATTCGTCCCATTCATGTCAAAGCTACAGACTTTGTCTTCTCTGGCTTAGGCACTCCTGGAAACACTACAAACATCATCAACGCCGCTGTCACACCCGCTTTCGCAGCTCAGTTCCCGGGTCTGAACGGTCTAGGCCTCTCTACAGCTAGACTTGACTTAGCTCCTAAAGGTGTGATCCCAATGCACACTCACCCTGGTGCCTCTGAGGTTCTCTTTGTCCTTACTGGCTCCATTACCGCTGGGTTTGTCTCCTCGGCAAACGCTGTCTACGTGCAGACACTCAAACCAGGACAGGTCATGGTTTTCCCACAGGGCTTGCTTCATTTCCAGATCAACGCGGGAAAATCCTCTGCTTCAGCCGTTGTCACTTTCAACAGCGCTAATCCGGGTCTGCAGATTCTCGACTTCGCACTCTTTGCTAACAGTCTTCCCACTGAACTCGTCGTGGGTACTACTTTCCTTGACGCCACTACAGTCAAGAAGCTAAAGGGTGTTCTTGGAGGAACTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0031012 GO:0044421 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

208

Amino Acids

21.56

Weight (kDa)

9.3

Isoelectric Point (pI)

20.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	53 - 198	3.7e-40	Cupin
Cupin_2	PF07883	89 - 161	2.7e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72610
fragaria_vesca	FvH4_6g34740
malus_domestica	MD09G1183200.v1.1
prunus_persica	Prupe.3G041700_v2.0.a1
pyrus_communis	pycom09g10090
rosa_chinensis	RchiOBHm_Chr2g0145401
rosa_laevigata	RLG00000020142
rosa_multiflora	Rmu_sc0001298.1_g000057
rosa_rugosa	Rorug02G0392000
rosa_samantha	Rh2AG445400 Rh2BG456200 Rh2DG466100
rosa_wichuraiana	Rw2G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	381
AccII	CGCG	2 cut(s)	87, 452
AciI	CCGC	5 cut(s)	101, 198, 210, 351, 452
AclWI	GGATC	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	579
AfaI	GTAC	2 cut(s)	10, 565
AfeI	AGCGCT	1 cut(s)	493
AgsI	TTSAA	2 cut(s)	59, 487
AjnI	CCWGG	3 cut(s)	169, 307, 400
AleI	CACNNNNGTG	1 cut(s)	309
AluBI	AGCT	5 cut(s)	137, 221, 260, 275, 598
AluI	AGCT	5 cut(s)	137, 221, 260, 275, 598
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	229
Aor51HI	AGCGCT	1 cut(s)	493
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	1 cut(s)	218
AspLEI	GCGC	2 cut(s)	89, 494
AsuC2I	CCSGG	3 cut(s)	230, 231, 501
AsuHPI	GGTGA	1 cut(s)	296
AvaI	CYCGRG	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	311
BbsI	GAAGAC	2 cut(s)	142, 533
BbvI	GCAGC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	3 cut(s)	171, 309, 402
BcnI	CCSGG	3 cut(s)	230, 231, 501
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	2 cut(s)	245, 261
BfmI	CTRYAG	4 cut(s)	138, 255, 506, 585
BfoI	RGCGCY	1 cut(s)	495
BisI	GCNGC	2 cut(s)	198, 219
BlsI	GCNGC	2 cut(s)	199, 220
Bme1390I	CCNGG	6 cut(s)	171, 230, 231, 309, 402, 501
BmeT110I	CYCGRG	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	313, 343
BmrFI	CCNGG	6 cut(s)	171, 230, 231, 309, 402, 501
BpiI	GAAGAC	2 cut(s)	142, 533
Bpu10I	CCTNAGC	1 cut(s)	160
BpuMI	CCSGG	3 cut(s)	230, 231, 501
BsaAI	YACGTR	1 cut(s)	385
BsaHI	GRCGYC	1 cut(s)	579
BsaJI	CCNNGG	3 cut(s)	229, 307, 366
Bse1I	ACTGG	2 cut(s)	343, 625
BseBI	CCWGG	3 cut(s)	171, 309, 402
BseDI	CCNNGG	3 cut(s)	229, 307, 366
BseMII	CTCAG	2 cut(s)	236, 309
BseNI	ACTGG	2 cut(s)	343, 625
BseRI	GAGGAG	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	407
Bsh1236I	CGCG	2 cut(s)	87, 452
BshFI	GGCC	1 cut(s)	249
BshNI	GGYRCC	1 cut(s)	311
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	230, 500
BslFI	GGGAC	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	249
BsoBI	CYCGRG	1 cut(s)	229
Bsp143I	GATC	2 cut(s)	288, 444
BspACI	CCGC	5 cut(s)	101, 198, 210, 351, 452
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	235, 310
BspFNI	CGCG	2 cut(s)	87, 452
BspLI	GGNNCC	2 cut(s)	313, 343
BspMAI	CTGCAG	1 cut(s)	510
BspPI	GGATC	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	343, 625
BssECI	CCNNGG	3 cut(s)	229, 307, 366
BssMI	GATC	2 cut(s)	288, 444
BssNI	GRCGYC	1 cut(s)	579
Bst2UI	CCWGG	3 cut(s)	171, 309, 402
Bst4CI	ACNGT	3 cut(s)	242, 539, 589
Bst6I	CTCTTC	1 cut(s)	33
BstACI	GRCGYC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstBAI	YACGTR	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	431
BstDEI	CTNAG	4 cut(s)	160, 222, 271, 318
BstEII	GGTNACC	1 cut(s)	104
BstFNI	CGCG	2 cut(s)	87, 452
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	2 cut(s)	89, 494
BstKTI	GATC	2 cut(s)	291, 447
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	288, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 530
BstNI	CCWGG	3 cut(s)	171, 309, 402
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	6 cut(s)	169, 228, 229, 307, 400, 499
BstSFI	CTRYAG	4 cut(s)	138, 255, 506, 585
BstUI	CGCG	2 cut(s)	87, 452
BstV1I	GCAGC	1 cut(s)	230
BstV2I	GAAGAC	2 cut(s)	142, 533
BsuRI	GGCC	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	546
Cac8I	GCNNGC	1 cut(s)	431
CfoI	GCGC	2 cut(s)	89, 494
Cfr9I	CCCGGG	1 cut(s)	229
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	2 cut(s)	9, 564
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	2 cut(s)	128, 412
CviQI	GTAC	2 cut(s)	9, 564
DdeI	CTNAG	4 cut(s)	160, 222, 271, 318
DpnI	GATC	2 cut(s)	290, 446
DpnII	GATC	2 cut(s)	288, 444
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	249
Eco47III	AGCGCT	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	453
Eco88I	CYCGRG	1 cut(s)	229
Eco91I	GGTNACC	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	104
EcoRII	CCWGG	3 cut(s)	169, 307, 400
FaeI	CATG	2 cut(s)	131, 415
FaiI	YATR	2 cut(s)	129, 413
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	2 cut(s)	127, 411
FauI	CCCGC	3 cut(s)	94, 217, 445
FblI	GTMKAC	1 cut(s)	381
Fnu4HI	GCNGC	2 cut(s)	198, 219
Fsp4HI	GCNGC	2 cut(s)	198, 219
FspBI	CTAG	2 cut(s)	245, 261
GlaI	GCGC	2 cut(s)	88, 493
GluI	GCNGC	2 cut(s)	198, 219
GsaI	CCCAGC	1 cut(s)	357
HaeII	RGCGCY	1 cut(s)	495
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	2 cut(s)	230, 500
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	2 cut(s)	89, 494
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	2 cut(s)	131, 415
Hin6I	GCGC	2 cut(s)	87, 492
HinP1I	GCGC	2 cut(s)	87, 492
HinfI	GANTC	1 cut(s)	511
HpaII	CCGG	2 cut(s)	230, 500
HphI	GGTGA	1 cut(s)	296
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	2 cut(s)	237, 319
Hpy188III	TCNNGA	4 cut(s)	59, 442, 515, 592
Hpy8I	GTNNAC	1 cut(s)	382
Hpy99I	CGWCG	1 cut(s)	560
HpyCH4III	ACNGT	3 cut(s)	242, 539, 589
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	4 cut(s)	114, 298, 388, 508
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 530
HpyF3I	CTNAG	4 cut(s)	160, 222, 271, 318
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	2 cut(s)	131, 415
HspAI	GCGC	2 cut(s)	87, 492
Kzo9I	GATC	2 cut(s)	288, 444
LmnI	GCTCC	2 cut(s)	280, 347
Lsp1109I	GCAGC	1 cut(s)	230
MaeI	CTAG	2 cut(s)	245, 261
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	3 cut(s)	104, 202, 478
MalI	GATC	2 cut(s)	290, 446
MboI	GATC	2 cut(s)	288, 444
MboII	GAAGA	4 cut(s)	7, 20, 142, 533
MnlI	CCTC	8 cut(s)	29, 61, 260, 313, 325, 376, 472, 608
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	2 cut(s)	200, 353
MspI	CCGG	2 cut(s)	230, 500
MspR9I	CCNGG	6 cut(s)	171, 230, 231, 309, 402, 501
Mva1269I	GAATGC	1 cut(s)	114
MvaI	CCWGG	3 cut(s)	171, 309, 402
MvnI	CGCG	2 cut(s)	87, 452
MwoI	GCNNNNNNNGC	2 cut(s)	218, 530
NciI	CCSGG	3 cut(s)	230, 231, 501
NdeII	GATC	2 cut(s)	288, 444
NlaIII	CATG	2 cut(s)	131, 415
NlaIV	GGNNCC	2 cut(s)	313, 343
NmeAIII	GCCGAG	1 cut(s)	347
NmuCI	GTSAC	2 cut(s)	202, 478
OliI	CACNNNNGTG	1 cut(s)	309
PceI	AGGCCT	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	1 cut(s)	114
PfeI	GAWTC	1 cut(s)	511
PflFI	GACNNNGTC	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	199, 220
Ppu21I	YACGTR	1 cut(s)	385
Psp6I	CCWGG	3 cut(s)	169, 307, 400
PspEI	GGTNACC	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	3 cut(s)	169, 307, 400
PspN4I	GGNNCC	2 cut(s)	313, 343
PstI	CTGCAG	1 cut(s)	510
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	2 cut(s)	10, 565
RsaNI	GTAC	2 cut(s)	9, 564
RseI	CAYNNNNRTG	1 cut(s)	309
SatI	GCNGC	2 cut(s)	198, 219
Sau3AI	GATC	2 cut(s)	288, 444
ScrFI	CCNGG	6 cut(s)	171, 230, 231, 309, 402, 501
SfcI	CTRYAG	4 cut(s)	138, 255, 506, 585
SmaI	CCCGGG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	309
SseBI	AGGCCT	1 cut(s)	249
SsiI	CCGC	5 cut(s)	101, 198, 210, 351, 452
SspMI	CTAG	2 cut(s)	245, 261
StuI	AGGCCT	1 cut(s)	249
StyD4I	CCNGG	6 cut(s)	169, 228, 229, 307, 400, 499
TaaI	ACNGT	3 cut(s)	242, 539, 589
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	1 cut(s)	516
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	511
TscAI	CASTG	1 cut(s)	553
TseFI	GTSAC	2 cut(s)	202, 478
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	2 cut(s)	202, 478
TspDTI	ATGAA	2 cut(s)	116, 425
TspMI	CCCGGG	1 cut(s)	229
TspRI	CASTG	1 cut(s)	553
Tth111I	GACNNNGTC	1 cut(s)	146
XmaI	CCCGGG	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	381
XspI	CTAG	2 cut(s)	245, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.