Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017046

Physical Location & Seq

Genomic Coordinates Forward (+)

67520886 .. 67521713

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG466100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTTTGTGAAAATGGCTAATTACACCATTCTCTTCCTCTTTTCTCTCATCTTCTTATCCTCTTCTCATGCTTCTGTCCAAGACTTCTGTGTTGCAGATCTAATTGGCCCTGATAGCCCTGCAGGATATTTCTGCAAGAACCCTGCTAAAGTCACTGTCAGTGACTTCGTGTATTCTGGCCTGGCCAAAGCTGGAAACACCACCAACATCATCCAAGCTGCTGTTACCCCCGCATTTGTCGCTCAATTTCCGGGTGTAAATGGTCTTGGCCTCTCTTTGGCAAGGCTTGACCTTGCGCCGGGGGGCGTTATCCCATTCCACACCCACCCTGGTGCTTCGGAAGTTCTTATTGTGTTGAGGGGTTATATCACTGCTGGCTTTGTTTCTTCAGCCAACTCTGTTTACGTGAAGACTCTTAAAAAGGGAGATGTCATGGTTTTCCCACAAGGGCTGTTGCACTTTCAAGTAAATGCTGCTAAAATACATGCCAAGGCCATTGTAAGCTTTAGCAGTGCCAGTCCAGGTCTCCAAATCCTCGATTTCGCACTTTTTGCTAACGATTTACCTTCTTCGTTGGTGGGGAAGACAACTTTCCTTGATCCTGCTCAAATCAAGAAACTCAAGGGAGTCCTTGGTGGCACTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

215

Amino Acids

22.51

Weight (kDa)

9.25

Isoelectric Point (pI)

26.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	60 - 204	2.6e-37	Cupin
Cupin_2	PF07883	96 - 166	1.3e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72610
fragaria_vesca	FvH4_6g34740
malus_domestica	MD09G1183200.v1.1
prunus_persica	Prupe.3G041700_v2.0.a1
pyrus_communis	pycom09g10090
rosa_chinensis	RchiOBHm_Chr2g0145401
rosa_laevigata	RLG00000020142
rosa_multiflora	Rmu_sc0001298.1_g000057
rosa_rugosa	Rorug02G0392000
rosa_samantha	Rh2AG445400 Rh2BG456200 Rh2DG466100
rosa_wichuraiana	Rw2G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	231
AclWI	GGATC	1 cut(s)	593
AcoI	YGGCCR	1 cut(s)	183
AcuI	CTGAAG	1 cut(s)	372
AfiI	CCNNNNNNNGG	2 cut(s)	277, 298
AgsI	TTSAA	1 cut(s)	464
AjnI	CCWGG	3 cut(s)	180, 328, 520
AleI	CACNNNNGTG	1 cut(s)	330
AluBI	AGCT	3 cut(s)	191, 218, 504
AluI	AGCT	3 cut(s)	191, 218, 504
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	593
AoxI	GGCC	5 cut(s)	106, 178, 183, 268, 492
ApeKI	GCWGC	2 cut(s)	218, 473
AspLEI	GCGC	1 cut(s)	298
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	2 cut(s)	252, 300
BalI	TGGCCA	1 cut(s)	185
BbsI	GAAGAC	2 cut(s)	416, 590
BbvI	GCAGC	2 cut(s)	205, 460
BciT130I	CCWGG	3 cut(s)	182, 330, 522
BcnI	CCSGG	2 cut(s)	252, 300
BcoDI	GTCTC	1 cut(s)	530
BfmI	CTRYAG	1 cut(s)	120
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	2 cut(s)	219, 474
BlsI	GCNGC	2 cut(s)	220, 475
Bme1390I	CCNGG	5 cut(s)	182, 252, 300, 330, 522
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	5 cut(s)	182, 252, 300, 330, 522
BpiI	GAAGAC	2 cut(s)	416, 590
BpuEI	CTTGAG	1 cut(s)	605
BpuMI	CCSGG	2 cut(s)	252, 300
BsaAI	YACGTR	1 cut(s)	406
BsaI	GGTCTC	1 cut(s)	530
BsaJI	CCNNGG	4 cut(s)	299, 328, 489, 631
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 298
Bse1I	ACTGG	2 cut(s)	516, 646
BseBI	CCWGG	3 cut(s)	182, 330, 522
BseDI	CCNNGG	4 cut(s)	299, 328, 489, 631
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	277, 298
BseNI	ACTGG	2 cut(s)	516, 646
BseXI	GCAGC	2 cut(s)	205, 460
BshFI	GGCC	5 cut(s)	108, 180, 185, 270, 494
BsiSI	CCGG	2 cut(s)	251, 299
BslI	CCNNNNNNNGG	2 cut(s)	277, 298
BsmAI	GTCTC	1 cut(s)	530
BsnI	GGCC	5 cut(s)	108, 180, 185, 270, 494
Bso31I	GGTCTC	1 cut(s)	530
Bsp143I	GATC	2 cut(s)	97, 598
BspACI	CCGC	1 cut(s)	231
BspANI	GGCC	5 cut(s)	108, 180, 185, 270, 494
BspMAI	CTGCAG	1 cut(s)	124
BspPI	GGATC	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	530
BsrI	ACTGG	2 cut(s)	516, 646
BssECI	CCNNGG	4 cut(s)	299, 328, 489, 631
BssMI	GATC	2 cut(s)	97, 598
BssT1I	CCWWGG	2 cut(s)	489, 631
Bst2UI	CCWGG	3 cut(s)	182, 330, 522
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	2 cut(s)	38, 67
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstBAI	YACGTR	1 cut(s)	406
BstC8I	GCNNGC	1 cut(s)	376
BstF5I	GGATG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	2 cut(s)	100, 601
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	2 cut(s)	97, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 239, 551
BstNI	CCWGG	3 cut(s)	182, 330, 522
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	5 cut(s)	180, 250, 298, 328, 520
BstSFI	CTRYAG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	205, 460
BstV2I	GAAGAC	2 cut(s)	416, 590
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	5 cut(s)	108, 180, 185, 270, 494
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	2 cut(s)	369, 517
BtsIMutI	CAGTG	5 cut(s)	153, 166, 369, 517, 639
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	107
CviAII	CATG	3 cut(s)	68, 433, 485
DpnI	GATC	2 cut(s)	99, 600
DpnII	GATC	2 cut(s)	97, 598
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	38, 67
EarI	CTCTTC	2 cut(s)	38, 67
Eco130I	CCWWGG	2 cut(s)	489, 631
Eco31I	GGTCTC	1 cut(s)	530
Eco57I	CTGAAG	1 cut(s)	372
EcoRII	CCWGG	3 cut(s)	180, 328, 520
EcoT14I	CCWWGG	2 cut(s)	489, 631
ErhI	CCWWGG	2 cut(s)	489, 631
FaeI	CATG	3 cut(s)	71, 436, 488
FaiI	YATR	4 cut(s)	69, 366, 434, 486
FatI	CATG	3 cut(s)	67, 432, 484
FauI	CCCGC	1 cut(s)	238
Fnu4HI	GCNGC	2 cut(s)	219, 474
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	219, 474
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	2 cut(s)	219, 474
HaeIII	GGCC	5 cut(s)	108, 180, 185, 270, 494
HapII	CCGG	2 cut(s)	251, 299
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	3 cut(s)	71, 436, 488
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	2 cut(s)	412, 627
HpaII	CCGG	2 cut(s)	251, 299
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	1 cut(s)	613
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	576
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	4 cut(s)	95, 122, 135, 457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 239, 551
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	71, 436, 488
HspAI	GCGC	1 cut(s)	296
Kzo9I	GATC	2 cut(s)	97, 598
Lsp1109I	GCAGC	2 cut(s)	205, 460
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	3 cut(s)	151, 161, 223
MalI	GATC	2 cut(s)	99, 600
MboI	GATC	2 cut(s)	97, 598
MboII	GAAGA	7 cut(s)	25, 43, 54, 378, 421, 561, 595
MflI	RGATCY	1 cut(s)	97
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	3 cut(s)	19, 102, 245
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	406, 636
MnlI	CCTC	5 cut(s)	47, 70, 281, 351, 545
Mox20I	TGGCCA	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	185
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	185
MspI	CCGG	2 cut(s)	251, 299
MspR9I	CCNGG	5 cut(s)	182, 252, 300, 330, 522
MvaI	CCWGG	3 cut(s)	182, 330, 522
MwoI	GCNNNNNNNGC	3 cut(s)	114, 239, 551
NciI	CCSGG	2 cut(s)	252, 300
NdeII	GATC	2 cut(s)	97, 598
NlaIII	CATG	3 cut(s)	71, 436, 488
NmuCI	GTSAC	2 cut(s)	151, 161
NspI	RCATGY	1 cut(s)	488
OliI	CACNNNNGTG	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	220, 475
PleI	GAGTC	2 cut(s)	406, 635
PpsI	GAGTC	2 cut(s)	406, 635
Ppu21I	YACGTR	1 cut(s)	406
Psp6I	CCWGG	3 cut(s)	180, 328, 520
PspGI	CCWGG	3 cut(s)	180, 328, 520
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	219, 474
Sau3AI	GATC	2 cut(s)	97, 598
Sau96I	GGNCC	1 cut(s)	107
SbfI	CCTGCAGG	1 cut(s)	124
SchI	GAGTC	2 cut(s)	406, 636
ScrFI	CCNGG	5 cut(s)	182, 252, 300, 330, 522
SdaI	CCTGCAGG	1 cut(s)	124
SetI	ASST	7 cut(s)	193, 220, 294, 408, 506, 526, 568
SfcI	CTRYAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse8387I	CCTGCAGG	1 cut(s)	124
Sse9I	AATT	3 cut(s)	19, 102, 245
SsiI	CCGC	1 cut(s)	231
StyD4I	CCNGG	5 cut(s)	180, 250, 298, 328, 520
StyI	CCWWGG	2 cut(s)	489, 631
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	1 cut(s)	537
TasI	AATT	3 cut(s)	19, 102, 245
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	5 cut(s)	160, 166, 376, 517, 646
TseFI	GTSAC	2 cut(s)	151, 161
TseI	GCWGC	2 cut(s)	218, 473
Tsp45I	GTSAC	2 cut(s)	151, 161
TspRI	CASTG	5 cut(s)	160, 166, 376, 517, 646
XceI	RCATGY	1 cut(s)	488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.