pycom09g10090

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0017046
Physical Location & Seq
Reverse (-)
8186256 .. 8188136
1881 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10090.1

Sequence Viewer

Length: 684 bp
ATGTTTTCAGTCACTCATCACTTCCCTGAACTGTTTCTGAAAATGCCTCGGTGGCAAATCCTCTTCCTCTTTTCTCTCATTTTCCTCTCATCCTCCACCTCCAATGCCTCTGTCAATGACTTCTGTGTGGCAGATCTGAAAGGCCCAGACAGCCCTTCAGGCTACACCTGCAAGATTCCTGCTATGGTCACTGTCAATGACTTTGTGTTCTCTGGCCTGGCCAAAGGTGGAAACACCACCAACATAATAAGCGCCGCCGTGACCCCGGCATTTGTTGCCCAGTTCCCAGGAGTCAATGGCCTTGGAATCTCTATGGCAAGGCTAGATTTAGCACCAAGTGGTGTTATCCCATTCCATACACACCCCGGAGCTTCGGAGATTCTCGTTGTGACGAGGGGTATTATCAAAGCCGGGTTTGTTTCGTCTGCCAACACGGTTTACTTGAAAACTCTTCACAAAGGAGAGGTCATGGTTTTCCCACAAGGGTTGCTGCATTTCCAAGTGAATGTTGCAAAAATACATTCCAATGCTTTTGTTAGCTTCAGTAGCGCAAGCCCCGGCCTCCAAATCCTTGACTTTGCCCTTTTCGCCAATGACTTGCCTTCGGAATTGGTGGCGCAGACCACTTTCCTCGACCTTGCTACAATCAAGAAGCTCAAGGGTGTTCTTGGTGGCACTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

228

Amino Acids

24.1

Weight (kDa)

8.59

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 72 - 215 1e-34 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72610
fragaria_vesca FvH4_6g34740
malus_domestica MD09G1183200.v1.1
prunus_persica Prupe.3G041700_v2.0.a1
pyrus_communis pycom09g10090
rosa_chinensis RchiOBHm_Chr2g0145401
rosa_laevigata RLG00000020142
rosa_multiflora Rmu_sc0001298.1_g000057
rosa_rugosa Rorug02G0392000
rosa_samantha Rh2AG445400 Rh2BG456200 Rh2DG466100
rosa_wichuraiana Rw2G036360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 176
AciI CCGC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 219
AcuI CTGAAG 2 cut(s) 141, 526
AdeI CACNNNGTG 1 cut(s) 338
AgsI TTSAA 1 cut(s) 445
AjnI CCWGG 2 cut(s) 216, 286
AluBI AGCT 3 cut(s) 371, 540, 655
AluI AGCT 3 cut(s) 371, 540, 655
AoxI GGCC 5 cut(s) 142, 214, 219, 298, 559
ApeKI GCWGC 1 cut(s) 490
ArsI GACNNNNNNTTYG 2 cut(s) 450, 482
Asp700I GAANNNNTTC 1 cut(s) 33
AspLEI GCGC 3 cut(s) 254, 551, 619
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 4 cut(s) 266, 366, 412, 558
BalI TGGCCA 1 cut(s) 221
BbvI GCAGC 1 cut(s) 477
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 2 cut(s) 218, 288
BcnI CCSGG 4 cut(s) 266, 366, 412, 558
BfaI CTAG 1 cut(s) 323
BfoI RGCGCY 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 176
BglI GCCNNNNNGGC 2 cut(s) 52, 159
BglII AGATCT 1 cut(s) 133
BisI GCNGC 2 cut(s) 255, 491
BlsI GCNGC 2 cut(s) 256, 492
Bme1390I CCNGG 6 cut(s) 218, 266, 288, 366, 412, 558
BmgT120I GGNCC 1 cut(s) 143
BmrFI CCNGG 6 cut(s) 218, 266, 288, 366, 412, 558
BmrI ACTGGG 1 cut(s) 274
BmuI ACTGGG 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 641
BpuMI CCSGG 4 cut(s) 266, 366, 412, 558
BsaJI CCNNGG 6 cut(s) 47, 264, 286, 301, 364, 556
Bse1I ACTGG 2 cut(s) 280, 682
BseBI CCWGG 2 cut(s) 218, 288
BseDI CCNNGG 6 cut(s) 47, 264, 286, 301, 364, 556
BseGI GGATG 1 cut(s) 89
BseNI ACTGG 2 cut(s) 280, 682
BseXI GCAGC 1 cut(s) 477
BshFI GGCC 5 cut(s) 144, 216, 221, 300, 561
BsiSI CCGG 4 cut(s) 266, 366, 411, 558
BsnI GGCC 5 cut(s) 144, 216, 221, 300, 561
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 255
BspANI GGCC 5 cut(s) 144, 216, 221, 300, 561
BspMI ACCTGC 1 cut(s) 176
BsrI ACTGG 2 cut(s) 280, 682
BssECI CCNNGG 6 cut(s) 47, 264, 286, 301, 364, 556
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 2 cut(s) 218, 288
Bst4CI ACNGT 3 cut(s) 33, 193, 436
Bst6I CTCTTC 2 cut(s) 68, 456
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 553
BstF5I GGATG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 3 cut(s) 254, 551, 619
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 7 cut(s) 52, 150, 159, 168, 275, 546, 587
BstNI CCWGG 2 cut(s) 218, 288
BstSCI CCNGG 6 cut(s) 216, 264, 286, 364, 410, 556
BstV1I GCAGC 1 cut(s) 477
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 5 cut(s) 144, 216, 221, 300, 561
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 2 cut(s) 189, 675
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 553
CfoI GCGC 3 cut(s) 254, 551, 619
Cfr13I GGNCC 1 cut(s) 143
CspCI CAANNNNNGTGG 2 cut(s) 468, 503
CviAII CATG 1 cut(s) 469
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
DraIII CACNNNGTG 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 219
Eam1104I CTCTTC 2 cut(s) 68, 456
EarI CTCTTC 2 cut(s) 68, 456
Eco130I CCWWGG 1 cut(s) 301
Eco57I CTGAAG 2 cut(s) 141, 526
EcoRII CCWGG 2 cut(s) 216, 286
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 1 cut(s) 472
FaiI YATR 5 cut(s) 185, 245, 314, 357, 470
FatI CATG 1 cut(s) 468
Fnu4HI GCNGC 2 cut(s) 255, 491
FokI GGATG 1 cut(s) 76
Fsp4HI GCNGC 2 cut(s) 255, 491
FspBI CTAG 1 cut(s) 323
GlaI GCGC 3 cut(s) 253, 550, 618
GluI GCNGC 2 cut(s) 255, 491
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 5 cut(s) 144, 216, 221, 300, 561
HapII CCGG 4 cut(s) 266, 366, 411, 558
HhaI GCGC 3 cut(s) 254, 551, 619
Hin1II CATG 1 cut(s) 472
Hin6I GCGC 3 cut(s) 252, 549, 617
HinP1I GCGC 3 cut(s) 252, 549, 617
HinfI GANTC 4 cut(s) 175, 291, 306, 379
HpaII CCGG 4 cut(s) 266, 366, 411, 558
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 4 cut(s) 39, 138, 376, 607
Hpy188III TCNNGA 1 cut(s) 649
Hpy8I GTNNAC 1 cut(s) 439
HpyAV CCTTC 2 cut(s) 165, 612
HpyCH4III ACNGT 3 cut(s) 33, 193, 436
HpyCH4V TGCA 3 cut(s) 171, 493, 512
HpyF10VI GCNNNNNNNGC 7 cut(s) 52, 150, 159, 168, 275, 546, 587
Hsp92II CATG 1 cut(s) 472
HspAI GCGC 3 cut(s) 252, 549, 617
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 368
Lsp1109I GCAGC 1 cut(s) 477
MaeI CTAG 1 cut(s) 323
MaeIII GTNAC 4 cut(s) 10, 187, 259, 388
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 2 cut(s) 55, 443
MflI RGATCY 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 221
MluCI AATT 1 cut(s) 608
MluNI TGGCCA 1 cut(s) 221
MlyI GAGTC 1 cut(s) 300
Mox20I TGGCCA 1 cut(s) 221
MroXI GAANNNNTTC 1 cut(s) 33
MscI TGGCCA 1 cut(s) 221
MseI TTAA 1 cut(s) 682
MslI CAYNNNNRTG 1 cut(s) 525
Msp20I TGGCCA 1 cut(s) 221
MspI CCGG 4 cut(s) 266, 366, 411, 558
MspR9I CCNGG 6 cut(s) 218, 266, 288, 366, 412, 558
MvaI CCWGG 2 cut(s) 218, 288
MwoI GCNNNNNNNGC 7 cut(s) 52, 150, 159, 168, 275, 546, 587
NciI CCSGG 4 cut(s) 266, 366, 412, 558
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 472
NmuCI GTSAC 4 cut(s) 10, 187, 259, 388
PaqCI CACCTGC 1 cut(s) 176
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 3 cut(s) 175, 306, 379
PkrI GCNGC 2 cut(s) 256, 492
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 216, 286
PspGI CCWGG 2 cut(s) 216, 286
PspPI GGNCC 1 cut(s) 143
PsuI RGATCY 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 525
SaqAI TTAA 1 cut(s) 682
SatI GCNGC 2 cut(s) 255, 491
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 300
ScrFI CCNGG 6 cut(s) 218, 266, 288, 366, 412, 558
SetI ASST 8 cut(s) 101, 170, 229, 373, 468, 542, 639, 657
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 1 cut(s) 656
SmoI CTYRAG 1 cut(s) 656
Sse9I AATT 1 cut(s) 608
SsiI CCGC 1 cut(s) 255
SspMI CTAG 1 cut(s) 323
StyD4I CCNGG 6 cut(s) 216, 264, 286, 364, 410, 556
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 3 cut(s) 33, 193, 436
TaqI TCGA 1 cut(s) 633
TasI AATT 1 cut(s) 608
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 3 cut(s) 175, 306, 379
Tru1I TTAA 1 cut(s) 682
Tru9I TTAA 1 cut(s) 682
TscAI CASTG 2 cut(s) 196, 682
TseFI GTSAC 4 cut(s) 10, 187, 259, 388
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 4 cut(s) 10, 187, 259, 388
TspRI CASTG 2 cut(s) 196, 682
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.