Rw2G036360

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0017046
Physical Location & Seq
Forward (+)
59808635 .. 59809993
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G036360.1

Sequence Viewer

Length: 828 bp
ATGTCCAGTGCAGAAAGGGGGTCTCATCATCAAGTAGTGGCTGTCCTCCTTTCATTAGTCCATTGTGTCCAGTGCATGGCTCGTTCTCAACTTGCTCCCAATCAATTTATGCGCAAGTTTTGTATATATATACCCAACCAAACCGATCGACTTGAGATGCCAAGCTCAGTAACCCTAAGCATGTTTGTGAAAATGGCTAATTACACCATTCTCTTCCTCTTTTCTCTCATCTTCTTATCCTCTTCTCATGCTTCTGTCCAAGACTTCTGTGTTGCAGATCTAATTGGCCCTGATAGCCCTGCAGGATATTTCTGCAAGAACCCTGCTAAAGTCACTGTCAGTGACTTCGTGTATTCTGGCCTGGCCAAAGCTGGAAACACCACCAACATCATCCAAGCTGCTGTTACCCCCGCATTTGTCGCTCAATTTCCGGGTGTAAATGGTCTTGGCCTCTCTTTGGCAAGGCTTGACCTTGCGCCGGGGGGCGTTATCCCATTCCACACCCACCCTGGTGCTTCGGAAGTTCTTATTGTGTTGAGGGGTTATATCACTGCTGGCTTTGTTTCTTCAGCCAACTCTGTTTACGTGAAGACTCTTAAAAAGGGAGATGTCATGGTTTTCCCACAAGGGCTGTTGCACTTTCAAGTAAATGCTGCTAAAATACATGGCAAGGCCATTGTAAGCTTTAGCAGTGCCAGTCCAGGTCTCCAAATCCTCGATTTCGCACTTTTTGCTAACGATTTACCTTCTTCGTTGGTGGGGAAGACAACTTTCCTTGATCCTGCTCAAATCAAGAAACTCAAGGGAGTCCTTGGTGGCACTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

275

Amino Acids

29.22

Weight (kDa)

9.22

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 120 - 264 1.1e-36 Cupin
Cupin_2 PF07883 156 - 218 4.6e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72610
fragaria_vesca FvH4_6g34740
malus_domestica MD09G1183200.v1.1
prunus_persica Prupe.3G041700_v2.0.a1
pyrus_communis pycom09g10090
rosa_chinensis RchiOBHm_Chr2g0145401
rosa_laevigata RLG00000020142
rosa_multiflora Rmu_sc0001298.1_g000057
rosa_rugosa Rorug02G0392000
rosa_samantha Rh2AG445400 Rh2BG456200 Rh2DG466100
rosa_wichuraiana Rw2G036360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 113
AccB7I CCANNNNNTGG 1 cut(s) 76
AciI CCGC 1 cut(s) 411
AclWI GGATC 1 cut(s) 773
AcoI YGGCCR 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 552
AfiI CCNNNNNNNGG 3 cut(s) 76, 457, 478
AgsI TTSAA 1 cut(s) 644
AjnI CCWGG 3 cut(s) 360, 508, 700
AleI CACNNNNGTG 1 cut(s) 510
AluBI AGCT 4 cut(s) 165, 371, 398, 684
AluI AGCT 4 cut(s) 165, 371, 398, 684
Alw26I GTCTC 2 cut(s) 27, 710
AlwI GGATC 1 cut(s) 773
AoxI GGCC 5 cut(s) 286, 358, 363, 448, 672
ApeKI GCWGC 2 cut(s) 398, 653
AspLEI GCGC 2 cut(s) 114, 478
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 2 cut(s) 432, 480
BalI TGGCCA 1 cut(s) 365
BbsI GAAGAC 2 cut(s) 596, 770
BbvI GCAGC 2 cut(s) 385, 640
BciT130I CCWGG 3 cut(s) 362, 510, 702
BcnI CCSGG 2 cut(s) 432, 480
BcoDI GTCTC 2 cut(s) 27, 710
BfmI CTRYAG 1 cut(s) 300
BglII AGATCT 1 cut(s) 277
BisI GCNGC 2 cut(s) 399, 654
BlsI GCNGC 2 cut(s) 400, 655
Bme1390I CCNGG 5 cut(s) 362, 432, 480, 510, 702
BmgT120I GGNCC 1 cut(s) 287
BmrFI CCNGG 5 cut(s) 362, 432, 480, 510, 702
BmsI GCATC 1 cut(s) 147
BpiI GAAGAC 2 cut(s) 596, 770
Bpu10I CCTNAGC 1 cut(s) 176
BpuEI CTTGAG 2 cut(s) 173, 785
BpuMI CCSGG 2 cut(s) 432, 480
BsaAI YACGTR 1 cut(s) 586
BsaI GGTCTC 2 cut(s) 27, 710
BsaJI CCNNGG 3 cut(s) 479, 508, 811
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 457, 478
Bse1I ACTGG 4 cut(s) 6, 70, 696, 826
BseBI CCWGG 3 cut(s) 362, 510, 702
BseDI CCNNGG 3 cut(s) 479, 508, 811
BseGI GGATG 1 cut(s) 390
BseLI CCNNNNNNNGG 3 cut(s) 76, 457, 478
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 4 cut(s) 6, 70, 696, 826
BseXI GCAGC 2 cut(s) 385, 640
BsgI GTGCAG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 5 cut(s) 288, 360, 365, 450, 674
BsiEI CGRYCG 1 cut(s) 148
BsiSI CCGG 2 cut(s) 431, 479
BslI CCNNNNNNNGG 3 cut(s) 76, 457, 478
BsmAI GTCTC 2 cut(s) 27, 710
BsnI GGCC 5 cut(s) 288, 360, 365, 450, 674
Bso31I GGTCTC 2 cut(s) 27, 710
Bsp143I GATC 3 cut(s) 145, 277, 778
BspACI CCGC 1 cut(s) 411
BspANI GGCC 5 cut(s) 288, 360, 365, 450, 674
BspCNI CTCAG 1 cut(s) 179
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 1 cut(s) 773
BspTNI GGTCTC 2 cut(s) 27, 710
BsrI ACTGG 4 cut(s) 6, 70, 696, 826
BssECI CCNNGG 3 cut(s) 479, 508, 811
BssMI GATC 3 cut(s) 145, 277, 778
BssT1I CCWWGG 1 cut(s) 811
Bst2UI CCWGG 3 cut(s) 362, 510, 702
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 2 cut(s) 218, 247
BstAPI GCANNNNNTGC 1 cut(s) 731
BstBAI YACGTR 1 cut(s) 586
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 2 cut(s) 166, 176
BstF5I GGATG 1 cut(s) 390
BstHHI GCGC 2 cut(s) 114, 478
BstKTI GATC 3 cut(s) 148, 280, 781
BstMAI GTCTC 2 cut(s) 27, 710
BstMBI GATC 3 cut(s) 145, 277, 778
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 3 cut(s) 294, 419, 731
BstNI CCWGG 3 cut(s) 362, 510, 702
BstNSI RCATGY 1 cut(s) 184
BstSCI CCNGG 5 cut(s) 360, 430, 478, 508, 700
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 385, 640
BstV2I GAAGAC 2 cut(s) 596, 770
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
BsuRI GGCC 5 cut(s) 288, 360, 365, 450, 674
BtsCI GGATG 1 cut(s) 390
BtsI GCAGTG 2 cut(s) 549, 697
BtsIMutI CAGTG 7 cut(s) 13, 77, 333, 346, 549, 697, 819
Cac8I GCNNGC 1 cut(s) 556
CfoI GCGC 2 cut(s) 114, 478
Cfr13I GGNCC 1 cut(s) 287
CviAII CATG 5 cut(s) 76, 181, 248, 613, 665
DdeI CTNAG 2 cut(s) 166, 176
DpnI GATC 3 cut(s) 147, 279, 780
DpnII GATC 3 cut(s) 145, 277, 778
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 2 cut(s) 218, 247
EarI CTCTTC 2 cut(s) 218, 247
Eco130I CCWWGG 1 cut(s) 811
Eco31I GGTCTC 2 cut(s) 27, 710
Eco57I CTGAAG 1 cut(s) 552
EcoRII CCWGG 3 cut(s) 360, 508, 700
EcoT14I CCWWGG 1 cut(s) 811
ErhI CCWWGG 1 cut(s) 811
FaeI CATG 5 cut(s) 79, 184, 251, 616, 668
FatI CATG 5 cut(s) 75, 180, 247, 612, 664
FauI CCCGC 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 399, 654
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 399, 654
FspI TGCGCA 1 cut(s) 113
GlaI GCGC 2 cut(s) 113, 477
GluI GCNGC 2 cut(s) 399, 654
HaeIII GGCC 5 cut(s) 288, 360, 365, 450, 674
HapII CCGG 2 cut(s) 431, 479
HhaI GCGC 2 cut(s) 114, 478
Hin1II CATG 5 cut(s) 79, 184, 251, 616, 668
Hin6I GCGC 2 cut(s) 112, 476
HinP1I GCGC 2 cut(s) 112, 476
HindIII AAGCTT 1 cut(s) 682
HinfI GANTC 2 cut(s) 592, 807
HpaII CCGG 2 cut(s) 431, 479
Hpy166II GTNNAC 1 cut(s) 583
Hpy188I TCNGA 1 cut(s) 520
Hpy188III TCNNGA 1 cut(s) 793
Hpy8I GTNNAC 1 cut(s) 583
HpyAV CCTTC 1 cut(s) 756
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 6 cut(s) 11, 75, 275, 302, 315, 637
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 419, 731
HpyF3I CTNAG 2 cut(s) 166, 176
HpySE526I ACGT 1 cut(s) 585
Hsp92II CATG 5 cut(s) 79, 184, 251, 616, 668
HspAI GCGC 2 cut(s) 112, 476
Kzo9I GATC 3 cut(s) 145, 277, 778
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 2 cut(s) 385, 640
LweI GCATC 1 cut(s) 147
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 4 cut(s) 169, 331, 341, 403
MalI GATC 3 cut(s) 147, 279, 780
MboI GATC 3 cut(s) 145, 277, 778
MboII GAAGA 7 cut(s) 205, 223, 234, 558, 601, 741, 775
MflI RGATCY 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 4 cut(s) 104, 199, 282, 425
MluNI TGGCCA 1 cut(s) 365
MlyI GAGTC 2 cut(s) 586, 816
MnlI CCTC 6 cut(s) 56, 227, 250, 461, 531, 725
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MseI TTAA 1 cut(s) 597
MslI CAYNNNNRTG 2 cut(s) 185, 510
Msp20I TGGCCA 1 cut(s) 365
MspI CCGG 2 cut(s) 431, 479
MspR9I CCNGG 5 cut(s) 362, 432, 480, 510, 702
MvaI CCWGG 3 cut(s) 362, 510, 702
MwoI GCNNNNNNNGC 3 cut(s) 294, 419, 731
NciI CCSGG 2 cut(s) 432, 480
NdeII GATC 3 cut(s) 145, 277, 778
NlaIII CATG 5 cut(s) 79, 184, 251, 616, 668
NmuCI GTSAC 2 cut(s) 331, 341
NsbI TGCGCA 1 cut(s) 113
NspI RCATGY 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 510
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 2 cut(s) 400, 655
Ple19I CGATCG 1 cut(s) 148
PleI GAGTC 2 cut(s) 586, 815
PpsI GAGTC 2 cut(s) 586, 815
Ppu21I YACGTR 1 cut(s) 586
Psp6I CCWGG 3 cut(s) 360, 508, 700
PspGI CCWGG 3 cut(s) 360, 508, 700
PspPI GGNCC 1 cut(s) 287
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 277
PvuI CGATCG 1 cut(s) 148
RseI CAYNNNNRTG 2 cut(s) 185, 510
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 2 cut(s) 399, 654
Sau3AI GATC 3 cut(s) 145, 277, 778
Sau96I GGNCC 1 cut(s) 287
SbfI CCTGCAGG 1 cut(s) 304
SchI GAGTC 2 cut(s) 586, 816
ScrFI CCNGG 5 cut(s) 362, 432, 480, 510, 702
SdaI CCTGCAGG 1 cut(s) 304
SetI ASST 8 cut(s) 167, 373, 400, 474, 588, 686, 706, 748
SfaNI GCATC 1 cut(s) 147
SfcI CTRYAG 1 cut(s) 300
SmiMI CAYNNNNRTG 2 cut(s) 185, 510
SmlI CTYRAG 2 cut(s) 152, 800
SmoI CTYRAG 2 cut(s) 152, 800
Sse8387I CCTGCAGG 1 cut(s) 304
Sse9I AATT 4 cut(s) 104, 199, 282, 425
SsiI CCGC 1 cut(s) 411
StyD4I CCNGG 5 cut(s) 360, 430, 478, 508, 700
StyI CCWWGG 1 cut(s) 811
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 1 cut(s) 588
TaqI TCGA 2 cut(s) 148, 717
TasI AATT 4 cut(s) 104, 199, 282, 425
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 7 cut(s) 13, 77, 340, 346, 556, 697, 826
TseFI GTSAC 2 cut(s) 331, 341
TseI GCWGC 2 cut(s) 398, 653
Tsp45I GTSAC 2 cut(s) 331, 341
TspDTI ATGAA 1 cut(s) 42
TspRI CASTG 7 cut(s) 13, 77, 340, 346, 556, 697, 826
Van91I CCANNNNNTGG 1 cut(s) 76
XceI RCATGY 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.