Prupe.3G041700_v2.0.a1

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0017046
Physical Location & Seq
Reverse (-)
2972761 .. 2973474
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G041700.1

Sequence Viewer

Length: 639 bp
ATGCCTCAGTACTACATTCTCTTCCTATTCTTTCTCATTTTCTTCTCCTCCTCTTCTCATGCTTCTGTCCAAGACTTTTGTGTGGCAGACTTGAAAGGCCCAGATGGCCCTGCAGGCTACCCTTGCAAGAGCCCTGCTAATGTCACTGTCAGTGACTTTGTGTTCTCTGGCCTGGCCAAAGGTGGAAACACCACCAACATAATCAAAGCTGCTGTGACCCCTGCATTTGTGGCTCAGTTTCCTGGTGTCAATGGGCTTGGCCTCTCTATGGCAAGGCTAGACTTAGCGCCAGGTGGCGTCATCCCATTCCACACACACCCTGGTGCTTCAGAAATTCTGGTTGTGACAAGAGGACACATCACAGCAGGCTTTGTTTCCTCAGCCAGCACTGTGTACTTGGAGACTCTTAAGAAGGGAGATGTCATGGTTTTCCCTCAAGGGTTGCTGCATTTTCAAGTGAATGCTGCTAAAATACACTCCAGTGCTTTTGTTAGCTTCAGCAGTGCAAGCCCTGGTCTCCAAATCCTTGACTTTGCCCTCTTTGCTAACAACTTGCCTTCTGCATTGGTGGGGCAGACCACTTTCCTTGACCTTGCTCAGATCAAGAAGCTTAAGGGTGTTCTTGGTGGCACTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

213

Amino Acids

22.14

Weight (kDa)

8.57

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72610
fragaria_vesca FvH4_6g34740
malus_domestica MD09G1183200.v1.1
prunus_persica Prupe.3G041700_v2.0.a1
pyrus_communis pycom09g10090
rosa_chinensis RchiOBHm_Chr2g0145401
rosa_laevigata RLG00000020142
rosa_multiflora Rmu_sc0001298.1_g000057
rosa_rugosa Rorug02G0392000
rosa_samantha Rh2AG445400 Rh2BG456200 Rh2DG466100
rosa_wichuraiana Rw2G036360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 2 cut(s) 312, 481
AcyI GRCGYC 1 cut(s) 297
AfaI GTAC 2 cut(s) 11, 395
AfiI CCNNNNNNNGG 1 cut(s) 268
AflII CTTAAG 2 cut(s) 407, 611
AgsI TTSAA 2 cut(s) 94, 455
AjnI CCWGG 5 cut(s) 171, 241, 289, 319, 511
AleI CACNNNNGTG 2 cut(s) 321, 480
AluBI AGCT 3 cut(s) 209, 495, 610
AluI AGCT 3 cut(s) 209, 495, 610
Alw26I GTCTC 2 cut(s) 395, 521
AoxI GGCC 5 cut(s) 97, 106, 169, 174, 259
ApeKI GCWGC 3 cut(s) 209, 445, 464
ApoI RAATTY 1 cut(s) 333
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 2 cut(s) 98, 107
BalI TGGCCA 1 cut(s) 176
BanII GRGCYC 1 cut(s) 134
BbvCI CCTCAGC 1 cut(s) 379
BbvI GCAGC 3 cut(s) 196, 432, 451
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 5 cut(s) 173, 243, 291, 321, 513
BcoDI GTCTC 2 cut(s) 395, 521
BfaI CTAG 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 290
BfrI CTTAAG 2 cut(s) 407, 611
BglI GCCNNNNNGGC 2 cut(s) 105, 114
BisI GCNGC 3 cut(s) 210, 446, 465
BlsI GCNGC 3 cut(s) 211, 447, 466
BmcAI AGTACT 1 cut(s) 11
Bme1390I CCNGG 5 cut(s) 173, 243, 291, 321, 513
BmgT120I GGNCC 2 cut(s) 98, 107
BmrFI CCNGG 5 cut(s) 173, 243, 291, 321, 513
BpmI CTGGAG 1 cut(s) 463
Bpu10I CCTNAGC 1 cut(s) 379
BpuEI CTTGAG 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 521
BsaJI CCNNGG 2 cut(s) 319, 511
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 480, 637
BseBI CCWGG 5 cut(s) 173, 243, 291, 321, 513
BseDI CCNNGG 2 cut(s) 319, 511
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 268
BseMII CTCAG 4 cut(s) 20, 248, 393, 611
BseNI ACTGG 2 cut(s) 480, 637
BseRI GAGGAG 2 cut(s) 37, 40
BseXI GCAGC 3 cut(s) 196, 432, 451
BshFI GGCC 5 cut(s) 99, 108, 171, 176, 261
BslI CCNNNNNNNGG 1 cut(s) 268
BsmAI GTCTC 2 cut(s) 395, 521
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 5 cut(s) 99, 108, 171, 176, 261
Bso31I GGTCTC 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 600
BspANI GGCC 5 cut(s) 99, 108, 171, 176, 261
BspCNI CTCAG 4 cut(s) 19, 247, 392, 610
BspMAI CTGCAG 1 cut(s) 115
BspTI CTTAAG 2 cut(s) 407, 611
BspTNI GGTCTC 1 cut(s) 521
BsrI ACTGG 2 cut(s) 480, 637
BssECI CCNNGG 2 cut(s) 319, 511
BssMI GATC 1 cut(s) 600
BssNI GRCGYC 1 cut(s) 297
Bst2UI CCWGG 5 cut(s) 173, 243, 291, 321, 513
Bst4CI ACNGT 2 cut(s) 148, 391
Bst6I CTCTTC 2 cut(s) 26, 58
BstACI GRCGYC 1 cut(s) 297
BstAFI CTTAAG 2 cut(s) 407, 611
BstC8I GCNNGC 4 cut(s) 115, 367, 385, 508
BstDEI CTNAG 5 cut(s) 6, 234, 283, 379, 597
BstF5I GGATG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 603
BstMAI GTCTC 2 cut(s) 395, 521
BstMBI GATC 1 cut(s) 600
BstMWI GCNNNNNNNGC 6 cut(s) 105, 114, 123, 230, 507, 542
BstNI CCWGG 5 cut(s) 173, 243, 291, 321, 513
BstSCI CCNGG 5 cut(s) 171, 241, 289, 319, 511
BstSFI CTRYAG 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 196, 432, 451
BsuRI GGCC 5 cut(s) 99, 108, 171, 176, 261
BtsCI GGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 6 cut(s) 144, 157, 387, 487, 508, 630
Cac8I GCNNGC 4 cut(s) 115, 367, 385, 508
CfoI GCGC 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 98, 107
CseI GACGC 1 cut(s) 286
Csp6I GTAC 2 cut(s) 10, 394
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviAII CATG 2 cut(s) 59, 424
CviQI GTAC 2 cut(s) 10, 394
DdeI CTNAG 5 cut(s) 6, 234, 283, 379, 597
DpnI GATC 1 cut(s) 602
DpnII GATC 1 cut(s) 600
EaeI YGGCCR 1 cut(s) 174
Eam1104I CTCTTC 2 cut(s) 26, 58
EarI CTCTTC 2 cut(s) 26, 58
Eco24I GRGCYC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 521
Eco57I CTGAAG 2 cut(s) 312, 481
EcoRII CCWGG 5 cut(s) 171, 241, 289, 319, 511
EcoT38I GRGCYC 1 cut(s) 134
FaeI CATG 2 cut(s) 62, 427
FaiI YATR 4 cut(s) 60, 200, 269, 425
FatI CATG 2 cut(s) 58, 423
Fnu4HI GCNGC 3 cut(s) 210, 446, 465
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 210, 446, 465
FspBI CTAG 1 cut(s) 278
GlaI GCGC 1 cut(s) 288
GluI GCNGC 3 cut(s) 210, 446, 465
GsuI CTGGAG 1 cut(s) 463
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 5 cut(s) 99, 108, 171, 176, 261
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 289
Hin1I GRCGYC 1 cut(s) 297
Hin1II CATG 2 cut(s) 62, 427
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 2 cut(s) 331, 600
Hpy188III TCNNGA 1 cut(s) 604
Hpy8I GTNNAC 1 cut(s) 394
HpyAV CCTTC 2 cut(s) 406, 567
HpyCH4III ACNGT 2 cut(s) 148, 391
HpyCH4V TGCA 6 cut(s) 113, 126, 224, 448, 506, 563
HpyF10VI GCNNNNNNNGC 6 cut(s) 105, 114, 123, 230, 507, 542
HpyF3I CTNAG 5 cut(s) 6, 234, 283, 379, 597
Hsp92I GRCGYC 1 cut(s) 297
Hsp92II CATG 2 cut(s) 62, 427
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 1 cut(s) 600
Lsp1109I GCAGC 3 cut(s) 196, 432, 451
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 4 cut(s) 142, 152, 214, 343
MalI GATC 1 cut(s) 602
MboI GATC 1 cut(s) 600
MboII GAAGA 3 cut(s) 13, 34, 45
MhlI GDGCHC 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 176
MluCI AATT 1 cut(s) 333
MluNI TGGCCA 1 cut(s) 176
MlyI GAGTC 1 cut(s) 397
MnlI CCTC 8 cut(s) 15, 58, 61, 272, 344, 388, 444, 548
Mox20I TGGCCA 1 cut(s) 176
MscI TGGCCA 1 cut(s) 176
MseI TTAA 2 cut(s) 408, 612
MslI CAYNNNNRTG 2 cut(s) 321, 480
Msp20I TGGCCA 1 cut(s) 176
MspCI CTTAAG 2 cut(s) 407, 611
MspR9I CCNGG 5 cut(s) 173, 243, 291, 321, 513
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 5 cut(s) 173, 243, 291, 321, 513
MwoI GCNNNNNNNGC 6 cut(s) 105, 114, 123, 230, 507, 542
NdeII GATC 1 cut(s) 600
NlaIII CATG 2 cut(s) 62, 427
NmuCI GTSAC 4 cut(s) 142, 152, 214, 343
OliI CACNNNNGTG 2 cut(s) 321, 480
PctI GAATGC 1 cut(s) 466
PkrI GCNGC 3 cut(s) 211, 447, 466
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
Psp6I CCWGG 5 cut(s) 171, 241, 289, 319, 511
PspGI CCWGG 5 cut(s) 171, 241, 289, 319, 511
PspPI GGNCC 2 cut(s) 98, 107
PstI CTGCAG 1 cut(s) 115
RsaI GTAC 2 cut(s) 11, 395
RsaNI GTAC 2 cut(s) 10, 394
RseI CAYNNNNRTG 2 cut(s) 321, 480
SaqAI TTAA 2 cut(s) 408, 612
SatI GCNGC 3 cut(s) 210, 446, 465
Sau3AI GATC 1 cut(s) 600
Sau96I GGNCC 2 cut(s) 98, 107
SbfI CCTGCAGG 1 cut(s) 115
ScaI AGTACT 1 cut(s) 11
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 5 cut(s) 173, 243, 291, 321, 513
SdaI CCTGCAGG 1 cut(s) 115
SduI GDGCHC 1 cut(s) 134
SetI ASST 6 cut(s) 184, 211, 295, 497, 594, 612
SfcI CTRYAG 1 cut(s) 111
SfiI GGCCNNNNNGGCC 1 cut(s) 105
SmiMI CAYNNNNRTG 2 cut(s) 321, 480
SmlI CTYRAG 3 cut(s) 407, 435, 611
SmoI CTYRAG 3 cut(s) 407, 435, 611
Sse8387I CCTGCAGG 1 cut(s) 115
Sse9I AATT 1 cut(s) 333
SspMI CTAG 1 cut(s) 278
StyD4I CCNGG 5 cut(s) 171, 241, 289, 319, 511
TaaI ACNGT 2 cut(s) 148, 391
TasI AATT 1 cut(s) 333
TatI WGTACW 2 cut(s) 9, 393
Tru1I TTAA 2 cut(s) 408, 612
Tru9I TTAA 2 cut(s) 408, 612
TscAI CASTG 6 cut(s) 151, 157, 394, 487, 508, 637
TseFI GTSAC 4 cut(s) 142, 152, 214, 343
TseI GCWGC 3 cut(s) 209, 445, 464
Tsp45I GTSAC 4 cut(s) 142, 152, 214, 343
TspRI CASTG 6 cut(s) 151, 157, 394, 487, 508, 637
Vha464I CTTAAG 2 cut(s) 407, 611
XapI RAATTY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XspI CTAG 1 cut(s) 278
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.