Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0017046

Physical Location & Seq

Genomic Coordinates Reverse (-)

15746985 .. 15747626

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1183200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCTCGGTGTCAAATCCTCTTCCTCTTTTCTCTCATTTTCCTCTCATCCTCCACCTCCAATGCCTCTGTCAATGACTTCTGTGTGGCAGATCTGAAAGGCCCAGACAGCCCTTCAGGCTACACCTGCAAGACTGCTGCTATGGTCACTGTCAGTGACTTTGTGTTCTCTGGCCTGGCCAAAGGTGGGAACACCACCAACATAATAAGCGCCGCCGTGACCCCGGCATTTGTTGCCCAGTTCCCAGGAGTCAATGGCCTTGGAATCTCTATCGCAAGGCTAGATTTAGCACCAGGTGGTGTTATCCCATTCCATACACACCCCGGAGCTTCGGAGATTCTCGTTGTGACGAGGGGTATTATCAAAGCCGGGTTTGTTTCGTCTGCCAACACGGTTTACTTGAAAACTCTTCACAAAGGAGAGGTCATGGTTTTCCCACAAGGGTTGCTGCATTTCCAAGTGAATGTTGCAAAAATACATTCCAATGCTTTTGTTAGCTTCAGTAGCGCAAGCCCTGGCCTCCAAATCCTTGACTTTGCCCTTTTCGCCAACGACTTGCCTTCGGAATTGGTGGCGCAGACCACTTTCCTCGACCTTGCTACAATCAAGAAGCTCAAGGGCGTTCTTGGTGGCACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

214

Amino Acids

22.19

Weight (kDa)

8.48

Isoelectric Point (pI)

25.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	58 - 201	4.2e-35	Cupin
Cupin_2	PF07883	94 - 153	8.2e-06	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72610
fragaria_vesca	FvH4_6g34740
malus_domestica	MD09G1183200.v1.1
prunus_persica	Prupe.3G041700_v2.0.a1
pyrus_communis	pycom09g10090
rosa_chinensis	RchiOBHm_Chr2g0145401
rosa_laevigata	RLG00000020142
rosa_multiflora	Rmu_sc0001298.1_g000057
rosa_rugosa	Rorug02G0392000
rosa_samantha	Rh2AG445400 Rh2BG456200 Rh2DG466100
rosa_wichuraiana	Rw2G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	134
AciI	CCGC	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	177
AcuI	CTGAAG	2 cut(s)	99, 484
AdeI	CACNNNGTG	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	403
AjnI	CCWGG	4 cut(s)	174, 244, 292, 514
AluBI	AGCT	3 cut(s)	329, 498, 613
AluI	AGCT	3 cut(s)	329, 498, 613
AoxI	GGCC	5 cut(s)	100, 172, 177, 256, 517
ApeKI	GCWGC	2 cut(s)	137, 448
ArsI	GACNNNNNNTTYG	2 cut(s)	408, 440
AspLEI	GCGC	3 cut(s)	212, 509, 577
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	3 cut(s)	224, 324, 370
BalI	TGGCCA	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	124, 435
BceAI	ACGGC	1 cut(s)	200
BciT130I	CCWGG	4 cut(s)	176, 246, 294, 516
BcnI	CCSGG	3 cut(s)	224, 324, 370
BfaI	CTAG	1 cut(s)	281
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	134
BglI	GCCNNNNNGGC	1 cut(s)	117
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	3 cut(s)	138, 213, 449
BlsI	GCNGC	3 cut(s)	139, 214, 450
Bme1390I	CCNGG	7 cut(s)	176, 224, 246, 294, 324, 370, 516
BmgT120I	GGNCC	1 cut(s)	101
BmrFI	CCNGG	7 cut(s)	176, 224, 246, 294, 324, 370, 516
BmrI	ACTGGG	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	599
BpuMI	CCSGG	3 cut(s)	224, 324, 370
BsaJI	CCNNGG	6 cut(s)	5, 222, 244, 259, 322, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse1I	ACTGG	2 cut(s)	238, 640
BseBI	CCWGG	4 cut(s)	176, 246, 294, 516
BseDI	CCNNGG	6 cut(s)	5, 222, 244, 259, 322, 514
BseGI	GGATG	1 cut(s)	47
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseNI	ACTGG	2 cut(s)	238, 640
BseXI	GCAGC	2 cut(s)	124, 435
BshFI	GGCC	5 cut(s)	102, 174, 179, 258, 519
BsiSI	CCGG	3 cut(s)	224, 324, 369
BslI	CCNNNNNNNGG	1 cut(s)	186
BsnI	GGCC	5 cut(s)	102, 174, 179, 258, 519
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	5 cut(s)	102, 174, 179, 258, 519
BspMI	ACCTGC	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	238, 640
BssECI	CCNNGG	6 cut(s)	5, 222, 244, 259, 322, 514
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	4 cut(s)	176, 246, 294, 516
Bst4CI	ACNGT	2 cut(s)	151, 394
Bst6I	CTCTTC	2 cut(s)	26, 414
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	1 cut(s)	511
BstF5I	GGATG	1 cut(s)	47
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	3 cut(s)	212, 509, 577
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	6 cut(s)	108, 117, 126, 233, 504, 545
BstNI	CCWGG	4 cut(s)	176, 246, 294, 516
BstSCI	CCNGG	7 cut(s)	174, 222, 244, 292, 322, 368, 514
BstV1I	GCAGC	2 cut(s)	124, 435
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuRI	GGCC	5 cut(s)	102, 174, 179, 258, 519
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	3 cut(s)	147, 160, 633
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	511
CfoI	GCGC	3 cut(s)	212, 509, 577
Cfr13I	GGNCC	1 cut(s)	101
CsiI	ACCWGGT	1 cut(s)	292
CspCI	CAANNNNNGTGG	2 cut(s)	426, 461
CviAII	CATG	1 cut(s)	427
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
DraIII	CACNNNGTG	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	26, 414
EarI	CTCTTC	2 cut(s)	26, 414
Eco130I	CCWWGG	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	99, 484
EcoRII	CCWGG	4 cut(s)	174, 244, 292, 514
EcoT14I	CCWWGG	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	1 cut(s)	430
FaiI	YATR	4 cut(s)	143, 203, 315, 428
FatI	CATG	1 cut(s)	426
Fnu4HI	GCNGC	3 cut(s)	138, 213, 449
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	3 cut(s)	138, 213, 449
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	3 cut(s)	211, 508, 576
GluI	GCNGC	3 cut(s)	138, 213, 449
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	5 cut(s)	102, 174, 179, 258, 519
HapII	CCGG	3 cut(s)	224, 324, 369
HhaI	GCGC	3 cut(s)	212, 509, 577
Hin1II	CATG	1 cut(s)	430
Hin6I	GCGC	3 cut(s)	210, 507, 575
HinP1I	GCGC	3 cut(s)	210, 507, 575
HinfI	GANTC	3 cut(s)	249, 264, 337
HpaII	CCGG	3 cut(s)	224, 324, 369
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	3 cut(s)	96, 334, 565
Hpy188III	TCNNGA	1 cut(s)	607
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	2 cut(s)	123, 570
HpyCH4III	ACNGT	2 cut(s)	151, 394
HpyCH4V	TGCA	3 cut(s)	129, 451, 470
HpyF10VI	GCNNNNNNNGC	6 cut(s)	108, 117, 126, 233, 504, 545
Hsp92II	CATG	1 cut(s)	430
HspAI	GCGC	3 cut(s)	210, 507, 575
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	326
Lsp1109I	GCAGC	2 cut(s)	124, 435
MabI	ACCWGGT	1 cut(s)	292
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	4 cut(s)	145, 155, 217, 346
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	13, 401
MflI	RGATCY	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	1 cut(s)	566
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	258
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	1 cut(s)	640
MslI	CAYNNNNRTG	1 cut(s)	483
Msp20I	TGGCCA	1 cut(s)	179
MspI	CCGG	3 cut(s)	224, 324, 369
MspR9I	CCNGG	7 cut(s)	176, 224, 246, 294, 324, 370, 516
MvaI	CCWGG	4 cut(s)	176, 246, 294, 516
MwoI	GCNNNNNNNGC	6 cut(s)	108, 117, 126, 233, 504, 545
NciI	CCSGG	3 cut(s)	224, 324, 370
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	430
NmuCI	GTSAC	4 cut(s)	145, 155, 217, 346
PaqCI	CACCTGC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	264, 337
PkrI	GCNGC	3 cut(s)	139, 214, 450
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp6I	CCWGG	4 cut(s)	174, 244, 292, 514
PspGI	CCWGG	4 cut(s)	174, 244, 292, 514
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	640
SatI	GCNGC	3 cut(s)	138, 213, 449
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	7 cut(s)	176, 224, 246, 294, 324, 370, 516
SetI	ASST	9 cut(s)	59, 128, 187, 298, 331, 426, 500, 597, 615
SexAI	ACCWGGT	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	1 cut(s)	566
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	7 cut(s)	174, 222, 244, 292, 322, 368, 514
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	151, 394
TaqI	TCGA	1 cut(s)	591
TasI	AATT	1 cut(s)	566
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	264, 337
Tru1I	TTAA	1 cut(s)	640
Tru9I	TTAA	1 cut(s)	640
TscAI	CASTG	3 cut(s)	154, 160, 640
TseFI	GTSAC	4 cut(s)	145, 155, 217, 346
TseI	GCWGC	2 cut(s)	137, 448
Tsp45I	GTSAC	4 cut(s)	145, 155, 217, 346
TspRI	CASTG	3 cut(s)	154, 160, 640
XspI	CTAG	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.