Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0017046

Physical Location & Seq

Genomic Coordinates Forward (+)

61570580 .. 61571215

Gene Structure 636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020142

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTAATTACACCATTCTCTTCCTCTTTTCTCTCATCTTCTTATCCTCTTCTCATGCTTCTGTCCAAGACTTCTGTGTTGCAGATCTAACTGGCCCTGATAGCCCTGCAGGATATTTCTGCAAGAACCCTGCTAAAGTCACTGTCAGTGACTTCGTGTATTCTGGCCTGGCCAAAGCTGGAAACACTACCAACATAATCCAAGCTGCTGTTACCCCCGCATTTGTCGCTCAATTTCCGGGTGTAAATGGTCTTGGCCTCTCTTTGGCAAGGCTTGACCTTGCGCCAGGGGGCGTTATCCCATTCCACACCCACCCTGGTGCTTCGGAAGTTCTTATTGTGTTGAGGGGTTATATCACTGCTGGCTTTGTTTCTTCAGCCAACTCTGTTTACGTGAAGACTCTTAAAAAGGGAGATGTCATGGTTTTCCCACAAGGGCTGCTGCACTTTCAAGTAAATGCTGCTAAAATACATGGCAAGGCCATTGTAAGCTTTAGCAGTGCCAGTCCAGGTCTCCAAATCCTCGATTTCGCACTTTTCGCTAACGATTTACCTTCTTCATTGGTGGGGAAGACAACTTTCCTTGATCCTGCTCAAATCAAGAAGCTCAAGGGAGTCCTTGGTGGCACTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

212

Amino Acids

21.98

Weight (kDa)

9.1

Isoelectric Point (pI)

23.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	56 - 200	5.3e-37	Cupin
Cupin_2	PF07883	92 - 154	2.8e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72610
fragaria_vesca	FvH4_6g34740
malus_domestica	MD09G1183200.v1.1
prunus_persica	Prupe.3G041700_v2.0.a1
pyrus_communis	pycom09g10090
rosa_chinensis	RchiOBHm_Chr2g0145401
rosa_laevigata	RLG00000020142
rosa_multiflora	Rmu_sc0001298.1_g000057
rosa_rugosa	Rorug02G0392000
rosa_samantha	Rh2AG445400 Rh2BG456200 Rh2DG466100
rosa_wichuraiana	Rw2G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	1 cut(s)	581
AcoI	YGGCCR	1 cut(s)	171
AcuI	CTGAAG	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	452
AjnI	CCWGG	4 cut(s)	168, 286, 316, 508
AleI	CACNNNNGTG	1 cut(s)	318
AluBI	AGCT	4 cut(s)	179, 206, 492, 607
AluI	AGCT	4 cut(s)	179, 206, 492, 607
Alw26I	GTCTC	1 cut(s)	518
AlwI	GGATC	1 cut(s)	581
AoxI	GGCC	5 cut(s)	94, 166, 171, 256, 480
ApeKI	GCWGC	4 cut(s)	206, 439, 442, 461
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	173
BbsI	GAAGAC	2 cut(s)	404, 578
BbvI	GCAGC	4 cut(s)	193, 426, 429, 448
BciT130I	CCWGG	4 cut(s)	170, 288, 318, 510
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	518
BfmI	CTRYAG	1 cut(s)	108
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	4 cut(s)	207, 440, 443, 462
BlsI	GCNGC	4 cut(s)	208, 441, 444, 463
Bme1390I	CCNGG	5 cut(s)	170, 240, 288, 318, 510
BmgT120I	GGNCC	1 cut(s)	95
BmrFI	CCNGG	5 cut(s)	170, 240, 288, 318, 510
BpiI	GAAGAC	2 cut(s)	404, 578
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	394
BsaI	GGTCTC	1 cut(s)	518
BsaJI	CCNNGG	3 cut(s)	287, 316, 619
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	3 cut(s)	97, 504, 634
BseBI	CCWGG	4 cut(s)	170, 288, 318, 510
BseDI	CCNNGG	3 cut(s)	287, 316, 619
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseNI	ACTGG	3 cut(s)	97, 504, 634
BseXI	GCAGC	4 cut(s)	193, 426, 429, 448
BsgI	GTGCAG	1 cut(s)	428
BshFI	GGCC	5 cut(s)	96, 168, 173, 258, 482
BsiSI	CCGG	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	518
BsnI	GGCC	5 cut(s)	96, 168, 173, 258, 482
Bso31I	GGTCTC	1 cut(s)	518
Bsp143I	GATC	2 cut(s)	85, 586
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	5 cut(s)	96, 168, 173, 258, 482
BspMAI	CTGCAG	1 cut(s)	112
BspPI	GGATC	1 cut(s)	581
BspTNI	GGTCTC	1 cut(s)	518
BsrI	ACTGG	3 cut(s)	97, 504, 634
BssECI	CCNNGG	3 cut(s)	287, 316, 619
BssMI	GATC	2 cut(s)	85, 586
BssT1I	CCWWGG	1 cut(s)	619
Bst2UI	CCWGG	4 cut(s)	170, 288, 318, 510
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	2 cut(s)	26, 55
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	2 cut(s)	88, 589
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	2 cut(s)	85, 586
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 227, 539
BstNI	CCWGG	4 cut(s)	170, 288, 318, 510
BstSCI	CCNGG	5 cut(s)	168, 238, 286, 316, 508
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	4 cut(s)	193, 426, 429, 448
BstV2I	GAAGAC	2 cut(s)	404, 578
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	5 cut(s)	96, 168, 173, 258, 482
BtsI	GCAGTG	2 cut(s)	357, 505
BtsIMutI	CAGTG	5 cut(s)	141, 154, 357, 505, 627
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	95
CviAII	CATG	3 cut(s)	56, 421, 473
DpnI	GATC	2 cut(s)	87, 588
DpnII	GATC	2 cut(s)	85, 586
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	26, 55
EarI	CTCTTC	2 cut(s)	26, 55
Eco130I	CCWWGG	1 cut(s)	619
Eco31I	GGTCTC	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	360
EcoRII	CCWGG	4 cut(s)	168, 286, 316, 508
EcoT14I	CCWWGG	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	619
FaeI	CATG	3 cut(s)	59, 424, 476
FaiI	YATR	5 cut(s)	57, 197, 354, 422, 474
FatI	CATG	3 cut(s)	55, 420, 472
FauI	CCCGC	1 cut(s)	226
Fnu4HI	GCNGC	4 cut(s)	207, 440, 443, 462
Fsp4HI	GCNGC	4 cut(s)	207, 440, 443, 462
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	4 cut(s)	207, 440, 443, 462
HaeIII	GGCC	5 cut(s)	96, 168, 173, 258, 482
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	286
Hin1II	CATG	3 cut(s)	59, 424, 476
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HindIII	AAGCTT	1 cut(s)	490
HinfI	GANTC	2 cut(s)	400, 615
HpaII	CCGG	1 cut(s)	239
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	328
Hpy188III	TCNNGA	1 cut(s)	601
Hpy8I	GTNNAC	1 cut(s)	391
HpyAV	CCTTC	1 cut(s)	564
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	4 cut(s)	83, 110, 123, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 227, 539
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	59, 424, 476
HspAI	GCGC	1 cut(s)	284
Kzo9I	GATC	2 cut(s)	85, 586
Lsp1109I	GCAGC	4 cut(s)	193, 426, 429, 448
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	3 cut(s)	139, 149, 211
MalI	GATC	2 cut(s)	87, 588
MboI	GATC	2 cut(s)	85, 586
MboII	GAAGA	7 cut(s)	13, 31, 42, 366, 409, 549, 583
MflI	RGATCY	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	2 cut(s)	7, 233
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	394, 624
MnlI	CCTC	5 cut(s)	35, 58, 269, 339, 533
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	1 cut(s)	318
Msp20I	TGGCCA	1 cut(s)	173
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	5 cut(s)	170, 240, 288, 318, 510
MvaI	CCWGG	4 cut(s)	170, 288, 318, 510
MwoI	GCNNNNNNNGC	3 cut(s)	102, 227, 539
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	2 cut(s)	85, 586
NlaIII	CATG	3 cut(s)	59, 424, 476
NmuCI	GTSAC	2 cut(s)	139, 149
OliI	CACNNNNGTG	1 cut(s)	318
PkrI	GCNGC	4 cut(s)	208, 441, 444, 463
PleI	GAGTC	2 cut(s)	394, 623
PpsI	GAGTC	2 cut(s)	394, 623
Ppu21I	YACGTR	1 cut(s)	394
Psp6I	CCWGG	4 cut(s)	168, 286, 316, 508
PspGI	CCWGG	4 cut(s)	168, 286, 316, 508
PspPI	GGNCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	4 cut(s)	207, 440, 443, 462
Sau3AI	GATC	2 cut(s)	85, 586
Sau96I	GGNCC	1 cut(s)	95
SbfI	CCTGCAGG	1 cut(s)	112
SchI	GAGTC	2 cut(s)	394, 624
ScrFI	CCNGG	5 cut(s)	170, 240, 288, 318, 510
SdaI	CCTGCAGG	1 cut(s)	112
SetI	ASST	8 cut(s)	181, 208, 282, 396, 494, 514, 556, 609
SfcI	CTRYAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	608
SmoI	CTYRAG	1 cut(s)	608
Sse8387I	CCTGCAGG	1 cut(s)	112
Sse9I	AATT	2 cut(s)	7, 233
SsiI	CCGC	1 cut(s)	219
StyD4I	CCNGG	5 cut(s)	168, 238, 286, 316, 508
StyI	CCWWGG	1 cut(s)	619
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	525
TasI	AATT	2 cut(s)	7, 233
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	5 cut(s)	148, 154, 364, 505, 634
TseFI	GTSAC	2 cut(s)	139, 149
TseI	GCWGC	4 cut(s)	206, 439, 442, 461
Tsp45I	GTSAC	2 cut(s)	139, 149
TspDTI	ATGAA	1 cut(s)	549
TspRI	CASTG	5 cut(s)	148, 154, 364, 505, 634
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.