FvH4_6g34740

Auxin-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017046
Physical Location & Seq
Forward (+)
27411006 .. 27412034
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34740.t1

Sequence Viewer

Length: 672 bp
ATGCGAAGCTCAGTAACCCTAAGCAAGTCTGTGAAAATGCCTCATTACTCTATTCTCTTCCTCTTTTCTCTCATCTTCTTATCCTCTTCACATGCTTCTGTCCAAGACTTCTGTGTTGCGGATCTAACTGGCCCTGATAGCCCTGCAGGCTATTTCTGCAAGAACCCTGCTAATGTCACTGTCAGTGACTTCGTGTATTCTGGCCTAGCCAAAGCTGGAAACACCTCCAACATAATCCAAGCTGCTGTTACCCCCGCATTTGTCGCTCAATTTCCGGGTGTAAATGGTCTTGGTCTCTCTTTGGCAAGGCTTGACCTTGCGCCGGGCGGCGTTATTCCATTCCACACTCACCCTGGTGCTTCGGAAGTTCTTATTGTGTTGAGGGGATATATCACTGCTGGCTTTGTTTCTTCAGCCAACACTGTTTACGTGAAGACTCTTAAAAAGGGAGATGTCATGGTTTTCCCACAAGGGCTGTTGCACTTTCAAGTAAATGCTGCTAAAATACATGCCAAGGCTATTGTTAGTTTTAGCAGTGCCAGCCCCGGTCTCCAAATCCTCGATTTCGCACTTTTCGCTAATGATTTGCCTACTTCATTGGTGGGGAAGACAACTTTCCTTGATCCTGCTCAAATCATGAAGCTGAAGGGTGTCCTTGGTGGTACAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0048046 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

224

Amino Acids

23.33

Weight (kDa)

9.28

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 68 - 212 3.4e-37 Cupin
Cupin_2 PF07883 104 - 174 1.4e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72610
fragaria_vesca FvH4_6g34740
malus_domestica MD09G1183200.v1.1
prunus_persica Prupe.3G041700_v2.0.a1
pyrus_communis pycom09g10090
rosa_chinensis RchiOBHm_Chr2g0145401
rosa_laevigata RLG00000020142
rosa_multiflora Rmu_sc0001298.1_g000057
rosa_rugosa Rorug02G0392000
rosa_samantha Rh2AG445400 Rh2BG456200 Rh2DG466100
rosa_wichuraiana Rw2G036360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 119, 255, 327
AclWI GGATC 2 cut(s) 129, 617
AcuI CTGAAG 2 cut(s) 396, 665
AfaI GTAC 1 cut(s) 664
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 1 cut(s) 488
AjnI CCWGG 1 cut(s) 352
AleI CACNNNNGTG 1 cut(s) 354
AluBI AGCT 4 cut(s) 9, 215, 242, 643
AluI AGCT 4 cut(s) 9, 215, 242, 643
Alw26I GTCTC 2 cut(s) 299, 554
AlwI GGATC 2 cut(s) 129, 617
AoxI GGCC 2 cut(s) 130, 202
ApeKI GCWGC 2 cut(s) 242, 497
AspLEI GCGC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 131
AsuC2I CCSGG 3 cut(s) 276, 324, 546
AsuHPI GGTGA 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 440, 614
BbvI GCAGC 2 cut(s) 229, 484
BciT130I CCWGG 1 cut(s) 354
BcnI CCSGG 3 cut(s) 276, 324, 546
BcoDI GTCTC 2 cut(s) 299, 554
BfaI CTAG 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 144
BglI GCCNNNNNGGC 1 cut(s) 147
BisI GCNGC 3 cut(s) 243, 328, 498
BlsI GCNGC 3 cut(s) 244, 329, 499
Bme1390I CCNGG 4 cut(s) 276, 324, 354, 546
BmgT120I GGNCC 1 cut(s) 131
BmrFI CCNGG 4 cut(s) 276, 324, 354, 546
BpiI GAAGAC 2 cut(s) 440, 614
Bpu10I CCTNAGC 1 cut(s) 20
BpuMI CCSGG 3 cut(s) 276, 324, 546
BsaAI YACGTR 1 cut(s) 430
BsaI GGTCTC 2 cut(s) 299, 554
BsaJI CCNNGG 4 cut(s) 352, 513, 544, 655
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 133
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 4 cut(s) 352, 513, 544, 655
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 229, 484
BshFI GGCC 2 cut(s) 132, 204
BsiSI CCGG 3 cut(s) 275, 323, 546
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 2 cut(s) 299, 554
BsnI GGCC 2 cut(s) 132, 204
Bso31I GGTCTC 2 cut(s) 299, 554
Bsp143I GATC 2 cut(s) 121, 622
BspACI CCGC 3 cut(s) 119, 255, 327
BspANI GGCC 2 cut(s) 132, 204
BspCNI CTCAG 1 cut(s) 23
BspHI TCATGA 1 cut(s) 636
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 2 cut(s) 129, 617
BspTNI GGTCTC 2 cut(s) 299, 554
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 4 cut(s) 352, 513, 544, 655
BssMI GATC 2 cut(s) 121, 622
BssT1I CCWWGG 2 cut(s) 513, 655
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 181, 424
Bst6I CTCTTC 2 cut(s) 62, 91
BstBAI YACGTR 1 cut(s) 430
BstC8I GCNNGC 3 cut(s) 148, 400, 541
BstDEI CTNAG 2 cut(s) 10, 20
BstHHI GCGC 1 cut(s) 322
BstKTI GATC 2 cut(s) 124, 625
BstMAI GTCTC 2 cut(s) 299, 554
BstMBI GATC 2 cut(s) 121, 622
BstMWI GCNNNNNNNGC 6 cut(s) 138, 147, 156, 263, 540, 575
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 2 cut(s) 95, 512
BstSCI CCNGG 4 cut(s) 274, 322, 352, 544
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 2 cut(s) 229, 484
BstV2I GAAGAC 2 cut(s) 440, 614
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BsuRI GGCC 2 cut(s) 132, 204
BtsI GCAGTG 2 cut(s) 393, 541
BtsIMutI CAGTG 5 cut(s) 177, 190, 393, 420, 541
Cac8I GCNNGC 3 cut(s) 148, 400, 541
CciI TCATGA 1 cut(s) 636
CfoI GCGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 663
CviAII CATG 4 cut(s) 92, 457, 509, 637
CviQI GTAC 1 cut(s) 663
DdeI CTNAG 2 cut(s) 10, 20
DpnI GATC 2 cut(s) 123, 624
DpnII GATC 2 cut(s) 121, 622
Eam1104I CTCTTC 2 cut(s) 62, 91
EarI CTCTTC 2 cut(s) 62, 91
Eco130I CCWWGG 2 cut(s) 513, 655
Eco31I GGTCTC 2 cut(s) 299, 554
Eco57I CTGAAG 2 cut(s) 396, 665
EcoRII CCWGG 1 cut(s) 352
EcoT14I CCWWGG 2 cut(s) 513, 655
ErhI CCWWGG 2 cut(s) 513, 655
FaeI CATG 4 cut(s) 95, 460, 512, 640
FaiI YATR 6 cut(s) 93, 233, 390, 458, 510, 638
FatI CATG 4 cut(s) 91, 456, 508, 636
FauI CCCGC 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 243, 328, 498
Fsp4HI GCNGC 3 cut(s) 243, 328, 498
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 321
GluI GCNGC 3 cut(s) 243, 328, 498
HaeIII GGCC 2 cut(s) 132, 204
HapII CCGG 3 cut(s) 275, 323, 546
HhaI GCGC 1 cut(s) 322
Hin1II CATG 4 cut(s) 95, 460, 512, 640
Hin6I GCGC 1 cut(s) 320
HinP1I GCGC 1 cut(s) 320
HinfI GANTC 1 cut(s) 436
HpaII CCGG 3 cut(s) 275, 323, 546
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 427
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 1 cut(s) 637
Hpy8I GTNNAC 1 cut(s) 427
HpyAV CCTTC 1 cut(s) 640
HpyCH4III ACNGT 2 cut(s) 181, 424
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 3 cut(s) 146, 159, 481
HpyF10VI GCNNNNNNNGC 6 cut(s) 138, 147, 156, 263, 540, 575
HpyF3I CTNAG 2 cut(s) 10, 20
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 4 cut(s) 95, 460, 512, 640
HspAI GCGC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 121, 622
Lsp1109I GCAGC 2 cut(s) 229, 484
MaeI CTAG 1 cut(s) 206
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 4 cut(s) 13, 175, 185, 247
MalI GATC 2 cut(s) 123, 624
MboI GATC 2 cut(s) 121, 622
MboII GAAGA 6 cut(s) 49, 67, 78, 402, 445, 619
MflI RGATCY 1 cut(s) 121
MluCI AATT 1 cut(s) 269
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 6 cut(s) 51, 71, 94, 235, 375, 569
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 354
MspI CCGG 3 cut(s) 275, 323, 546
MspR9I CCNGG 4 cut(s) 276, 324, 354, 546
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 6 cut(s) 138, 147, 156, 263, 540, 575
NciI CCSGG 3 cut(s) 276, 324, 546
NdeII GATC 2 cut(s) 121, 622
NlaIII CATG 4 cut(s) 95, 460, 512, 640
NmuCI GTSAC 2 cut(s) 175, 185
NspI RCATGY 2 cut(s) 95, 512
OliI CACNNNNGTG 1 cut(s) 354
PagI TCATGA 1 cut(s) 636
PkrI GCNGC 3 cut(s) 244, 329, 499
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Ppu21I YACGTR 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 1 cut(s) 664
RsaNI GTAC 1 cut(s) 663
RseI CAYNNNNRTG 1 cut(s) 354
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 3 cut(s) 243, 328, 498
Sau3AI GATC 2 cut(s) 121, 622
Sau96I GGNCC 1 cut(s) 131
SbfI CCTGCAGG 1 cut(s) 148
SchI GAGTC 1 cut(s) 430
ScrFI CCNGG 4 cut(s) 276, 324, 354, 546
SdaI CCTGCAGG 1 cut(s) 148
SetI ASST 7 cut(s) 11, 217, 227, 244, 318, 432, 645
SfcI CTRYAG 1 cut(s) 144
SmiMI CAYNNNNRTG 1 cut(s) 354
Sse8387I CCTGCAGG 1 cut(s) 148
Sse9I AATT 1 cut(s) 269
SsiI CCGC 3 cut(s) 119, 255, 327
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 4 cut(s) 274, 322, 352, 544
StyI CCWWGG 2 cut(s) 513, 655
TaaI ACNGT 2 cut(s) 181, 424
TaiI ACGT 1 cut(s) 432
TaqI TCGA 1 cut(s) 561
TasI AATT 1 cut(s) 269
TauI GCSGC 1 cut(s) 330
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 5 cut(s) 184, 190, 400, 427, 541
TseFI GTSAC 2 cut(s) 175, 185
TseI GCWGC 2 cut(s) 242, 497
Tsp45I GTSAC 2 cut(s) 175, 185
TspDTI ATGAA 2 cut(s) 585, 653
TspRI CASTG 5 cut(s) 184, 190, 400, 427, 541
XceI RCATGY 2 cut(s) 95, 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.