AT1G73950

zinc finger, C3HC4 type domain containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
27799696 .. 27804687
4992 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73950.2

Sequence Viewer

Length: 1401 bp
ATGAACTGTTGGAGAGTGTTGAAATCCGTACAAGCCTCGGTGGCTCACTGCTTTCTCTTCTCTTTCACGCTCGCTTTGGTGCTCAAGCTCGATCACTCCATTACTTACTCCTGGTGGGTTGTGTGTCTACCACTGTGGGCTTTCCATGCTGTTGTTGCAAGGGGAAGATTCTCGCTTCCTGCTCCAATCGCTCCTCGTAACCGTCATTGGGCTCCATGTCATGCTATTGTCTCAACACCGTTGCTTATAGCTTTCGAATTACTCCTCTGTGTATACCTCGAGACTGCATATGCTGATTCGCCGCCAGCTGTGAGCTTGAAGATTGTATTTCTCCCTTTATTGGCGTTTGAAGTAATAATACTGGTGGACAATGCGAGAATGTGTCGGGCACTGATGCCTGGAGATGAAGAGAGCGTGAATGATGAAGCAGTATGGGAAGCTCTTCCTCATTTCTGGGTTGCGATCTCCATGGTGTTCTTTCTCGCTGCTACAGTCTTTACCCTCCTTAAGCTGTCTGGCGATGTAGCTGCTCTTGGCTGGTGGGATTTATTCATTAATTTCGGAATCGCAGAGTGCTTTGCGTTTCTTGTTTGTACAAAATGGTCTAATCCAGTGATTCATAGAAGCTCACGTGATAGAGAAACTGGGTCATCTTCTACCAATATTAGATATCTTGACTGGAACAGTGGCCTTGGGGTTTTTTCAGAAGACGATAGGAACCAAGATACATGTGGCCTGCAAGACATTGGTGGTCATATAATGAAAATCCCCCTCATTGTATTTCAAGTGGTACTTTGCATGCATCTAGAGGGGACTCCTGAAGCTGCTAAGTCTATATCTGTCCCTGTCCTGTTTTCTCCACTTTTCCTTTTGCAAGGCGTTGGTGTTCTATTTGCTGCTTCTAAACTAATAGAGAAGGTTGTTCTACTGCTGCGTGGCGAAGATGATACAGGATTATATTTTAGATTTCTATCCAGAGCACATGATTGCTTGGGTTTCTTGCACCATGGATCCAGGCTACTAGGTTGGTGGTCAATTGATGAAGGAAGCCGGGAGGAGGAAGCTCGACTATACTTTGATCAAGAATCTGGGTACAATACCTTCTGTGGTCATCCGCCTGAAATAGTCAAGAAAATGCCGAAGAAAGAGCTTGCGGAGGAGGTGTGGAGACTTCAAGCAGCACTTGGTGAACAAACAGAAATCACGAAATTCAGTCAGCAGGAATATGAGAGACTGCAAAATGAGAAAGTGCTGTGTAGGGTATGTTTTGAAAGAGAAATCAGTGTTGTACTGCTTCCATGTAGACACCGTGTTCTCTGCAGAAACTGTTCAGACAAGTGTAAAAAATGCCCCTTCTGCCGTATAACTATCGAAGAGCGGCTCCCCGTATATGATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

466

Amino Acids

52.91

Weight (kDa)

6.08

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_185A PF10269 28 - 263 5e-86 Transmembrane Fragile-X-F protein
zf-C3HC4_3 PF13920 388 - 431 9.2e-13 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1378
AccI GTMKAC 3 cut(s) 127, 273, 1303
AciI CCGC 4 cut(s) 302, 1115, 1154, 1378
AclWI GGATC 2 cut(s) 1005, 1018
AcsI RAATTY 1 cut(s) 1208
AcuI CTGAAG 1 cut(s) 840
AcvI CACGTG 1 cut(s) 632
AdeI CACNNNGTG 1 cut(s) 1187
AfaI GTAC 5 cut(s) 30, 595, 792, 1094, 1290
AfiI CCNNNNNNNGG 3 cut(s) 208, 340, 1057
AflII CTTAAG 1 cut(s) 506
AflIII ACRYGT 1 cut(s) 728
AgsI TTSAA 6 cut(s) 22, 319, 350, 785, 1175, 1271
AjnI CCWGG 3 cut(s) 110, 397, 1013
Alw21I GWGCWC 2 cut(s) 84, 982
Alw26I GTCTC 4 cut(s) 235, 275, 1162, 1225
AlwI GGATC 2 cut(s) 1005, 1018
AlwNI CAGNNNCTG 1 cut(s) 1326
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 2 cut(s) 688, 733
ApeKI GCWGC 6 cut(s) 485, 527, 824, 896, 931, 1178
ApoI RAATTY 1 cut(s) 1208
AseI ATTAAT 1 cut(s) 555
Asp700I GAANNNNTTC 2 cut(s) 441, 1327
AsuC2I CCSGG 1 cut(s) 1052
AsuHPI GGTGA 1 cut(s) 1199
AsuII TTCGAA 1 cut(s) 255
AvaI CYCGRG 1 cut(s) 278
BaeGI GKGCMC 1 cut(s) 391
BamHI GGATCC 1 cut(s) 1010
BanII GRGCYC 1 cut(s) 214
BarI GAAGNNNNNNTAC 4 cut(s) 342, 374, 1085, 1117
BbrPI CACGTG 1 cut(s) 632
BbsI GAAGAC 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 84, 982
BbvI GCAGC 6 cut(s) 472, 514, 811, 883, 918, 1190
BceAI ACGGC 1 cut(s) 1344
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 3 cut(s) 112, 399, 1015
BclI TGATCA 1 cut(s) 1078
BcnI CCSGG 1 cut(s) 1052
BcoDI GTCTC 4 cut(s) 235, 275, 1162, 1225
BfaI CTAG 2 cut(s) 806, 1022
BfmI CTRYAG 2 cut(s) 489, 1318
BfrI CTTAAG 1 cut(s) 506
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 8 cut(s) 302, 486, 528, 825, 897, 932, 1179, 1379
BlsI GCNGC 8 cut(s) 303, 487, 529, 826, 898, 933, 1180, 1380
Bme1390I CCNGG 4 cut(s) 112, 399, 1015, 1052
BmeT110I CYCGRG 1 cut(s) 278
BmiI GGNNCC 4 cut(s) 213, 719, 1012, 1382
BmrFI CCNGG 4 cut(s) 112, 399, 1015, 1052
BmrI ACTGGG 1 cut(s) 654
BmsI GCATC 2 cut(s) 384, 811
BmuI ACTGGG 1 cut(s) 654
BpiI GAAGAC 1 cut(s) 714
BpmI CTGGAG 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 1052
BsaAI YACGTR 1 cut(s) 632
BsaBI GATNNNNATC 1 cut(s) 970
BsaJI CCNNGG 4 cut(s) 36, 468, 691, 1006
BsaXI ACNNNNNCTCC 2 cut(s) 1148, 1178
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 340, 1057
Bse1I ACTGG 4 cut(s) 366, 611, 649, 683
Bse8I GATNNNNATC 1 cut(s) 970
BseBI CCWGG 3 cut(s) 112, 399, 1015
BseDI CCNNGG 4 cut(s) 36, 468, 691, 1006
BseGI GGATG 1 cut(s) 1111
BseJI GATNNNNATC 1 cut(s) 970
BseLI CCNNNNNNNGG 3 cut(s) 208, 340, 1057
BseNI ACTGG 4 cut(s) 366, 611, 649, 683
BseRI GAGGAG 4 cut(s) 183, 254, 1070, 1172
BseSI GKGCMC 1 cut(s) 391
BseXI GCAGC 6 cut(s) 472, 514, 811, 883, 918, 1190
BshFI GGCC 2 cut(s) 690, 735
BsiHKAI GWGCWC 2 cut(s) 84, 982
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 1 cut(s) 1051
BslFI GGGAC 2 cut(s) 826, 827
BslI CCNNNNNNNGG 3 cut(s) 208, 340, 1057
BsmAI GTCTC 4 cut(s) 235, 275, 1162, 1225
BsmFI GGGAC 2 cut(s) 826, 827
BsnI GGCC 2 cut(s) 690, 735
BsoBI CYCGRG 1 cut(s) 278
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 4 cut(s) 84, 214, 391, 982
Bsp1407I TGTACA 1 cut(s) 593
Bsp143I GATC 4 cut(s) 91, 462, 1010, 1078
Bsp19I CCATGG 2 cut(s) 468, 1006
BspACI CCGC 4 cut(s) 302, 1115, 1154, 1378
BspANI GGCC 2 cut(s) 690, 735
BspLI GGNNCC 4 cut(s) 213, 719, 1012, 1382
BspMAI CTGCAG 1 cut(s) 1322
BspPI GGATC 2 cut(s) 1005, 1018
BspQI GCTCTTC 2 cut(s) 447, 1368
BspT104I TTCGAA 1 cut(s) 255
BspTI CTTAAG 1 cut(s) 506
BsrBI CCGCTC 1 cut(s) 1378
BsrGI TGTACA 1 cut(s) 593
BsrI ACTGG 4 cut(s) 366, 611, 649, 683
BssECI CCNNGG 4 cut(s) 36, 468, 691, 1006
BssMI GATC 4 cut(s) 91, 462, 1010, 1078
BssNAI GTATAC 1 cut(s) 274
BssT1I CCWWGG 3 cut(s) 468, 691, 1006
Bst1107I GTATAC 1 cut(s) 274
Bst2UI CCWGG 3 cut(s) 112, 399, 1015
Bst4CI ACNGT 8 cut(s) 8, 135, 203, 240, 493, 686, 1310, 1328
Bst6I CTCTTC 4 cut(s) 62, 402, 447, 1368
BstAFI CTTAAG 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 632
BstBI TTCGAA 1 cut(s) 255
BstC8I GCNNGC 5 cut(s) 72, 306, 737, 800, 1152
BstDEI CTNAG 1 cut(s) 828
BstDSI CCRYGG 2 cut(s) 468, 1006
BstF5I GGATG 1 cut(s) 1111
BstKTI GATC 4 cut(s) 94, 465, 1013, 1081
BstMAI GTCTC 4 cut(s) 235, 275, 1162, 1225
BstMBI GATC 4 cut(s) 91, 462, 1010, 1078
BstMWI GCNNNNNNNGC 5 cut(s) 41, 146, 155, 188, 1356
BstNI CCWGG 3 cut(s) 112, 399, 1015
BstNSI RCATGY 2 cut(s) 732, 802
BstSCI CCNGG 4 cut(s) 110, 397, 1013, 1050
BstSFI CTRYAG 2 cut(s) 489, 1318
BstSLI GKGCMC 1 cut(s) 391
BstV1I GCAGC 6 cut(s) 472, 514, 811, 883, 918, 1190
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 1 cut(s) 1010
BstYI RGATCY 1 cut(s) 1010
BstZ17I GTATAC 1 cut(s) 274
BsuRI GGCC 2 cut(s) 690, 735
BtgI CCRYGG 2 cut(s) 468, 1006
BtgZI GCGATG 1 cut(s) 534
BtsCI GGATG 1 cut(s) 1111
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 6 cut(s) 46, 131, 389, 618, 691, 1288
Cac8I GCNNGC 5 cut(s) 72, 306, 737, 800, 1152
CaiI CAGNNNCTG 1 cut(s) 1326
Csp6I GTAC 5 cut(s) 29, 594, 791, 1093, 1289
CviAII CATG 9 cut(s) 146, 216, 221, 469, 729, 799, 983, 1007, 1299
CviQI GTAC 5 cut(s) 29, 594, 791, 1093, 1289
DdeI CTNAG 1 cut(s) 828
DpnI GATC 4 cut(s) 93, 464, 1012, 1080
DpnII GATC 4 cut(s) 91, 462, 1010, 1078
DraIII CACNNNGTG 1 cut(s) 1187
Eam1104I CTCTTC 4 cut(s) 62, 402, 447, 1368
EarI CTCTTC 4 cut(s) 62, 402, 447, 1368
EciI GGCGGA 1 cut(s) 1104
Eco130I CCWWGG 3 cut(s) 468, 691, 1006
Eco24I GRGCYC 1 cut(s) 214
Eco32I GATATC 1 cut(s) 671
Eco57I CTGAAG 1 cut(s) 840
Eco72I CACGTG 1 cut(s) 632
Eco88I CYCGRG 1 cut(s) 278
EcoRII CCWGG 3 cut(s) 110, 397, 1013
EcoRV GATATC 1 cut(s) 671
EcoT14I CCWWGG 3 cut(s) 468, 691, 1006
EcoT22I ATGCAT 1 cut(s) 804
EcoT38I GRGCYC 1 cut(s) 214
ErhI CCWWGG 3 cut(s) 468, 691, 1006
FaeI CATG 9 cut(s) 149, 219, 224, 472, 732, 802, 986, 1010, 1302
FalI AAGNNNNNCTT 4 cut(s) 777, 809, 1167, 1199
FaqI GGGAC 2 cut(s) 826, 827
FatI CATG 9 cut(s) 145, 215, 220, 468, 728, 798, 982, 1006, 1298
FauNDI CATATG 1 cut(s) 289
FbaI TGATCA 1 cut(s) 1078
FblI GTMKAC 3 cut(s) 127, 273, 1303
Fnu4HI GCNGC 8 cut(s) 302, 486, 528, 825, 897, 932, 1179, 1379
FokI GGATG 1 cut(s) 1098
FriOI GRGCYC 1 cut(s) 214
Fsp4HI GCNGC 8 cut(s) 302, 486, 528, 825, 897, 932, 1179, 1379
FspBI CTAG 2 cut(s) 806, 1022
GluI GCNGC 8 cut(s) 302, 486, 528, 825, 897, 932, 1179, 1379
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 2 cut(s) 690, 735
HapII CCGG 1 cut(s) 1051
Hin1II CATG 9 cut(s) 149, 219, 224, 472, 732, 802, 986, 1010, 1302
HinfI GANTC 6 cut(s) 168, 296, 564, 616, 814, 1085
HpaII CCGG 1 cut(s) 1051
HphI GGTGA 1 cut(s) 1199
Hpy166II GTNNAC 5 cut(s) 128, 274, 367, 1190, 1304
Hpy188I TCNGA 3 cut(s) 563, 706, 1333
Hpy188III TCNNGA 8 cut(s) 280, 674, 806, 818, 975, 1082, 1129, 1204
Hpy8I GTNNAC 5 cut(s) 128, 274, 367, 1190, 1304
HpyAV CCTTC 4 cut(s) 910, 1037, 1111, 1363
HpyCH4III ACNGT 8 cut(s) 8, 135, 203, 240, 493, 686, 1310, 1328
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 9 cut(s) 158, 287, 739, 798, 802, 874, 1003, 1237, 1320
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 146, 155, 188, 1356
HpyF3I CTNAG 1 cut(s) 828
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 9 cut(s) 149, 219, 224, 472, 732, 802, 986, 1010, 1302
Ksp22I TGATCA 1 cut(s) 1078
Kzo9I GATC 4 cut(s) 91, 462, 1010, 1078
LguI GCTCTTC 2 cut(s) 447, 1368
LmnI GCTCC 4 cut(s) 187, 196, 217, 1386
Lsp1109I GCAGC 6 cut(s) 472, 514, 811, 883, 918, 1190
LweI GCATC 2 cut(s) 384, 811
MaeI CTAG 2 cut(s) 806, 1022
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 1 cut(s) 197
MalI GATC 4 cut(s) 93, 464, 1012, 1080
MbiI CCGCTC 1 cut(s) 1378
MboI GATC 4 cut(s) 91, 462, 1010, 1078
MfeI CAATTG 1 cut(s) 1035
MflI RGATCY 1 cut(s) 1010
MhlI GDGCHC 4 cut(s) 84, 214, 391, 982
MluCI AATT 4 cut(s) 257, 556, 1035, 1208
MlyI GAGTC 1 cut(s) 808
Mph1103I ATGCAT 1 cut(s) 804
MroXI GAANNNNTTC 2 cut(s) 441, 1327
MseI TTAA 3 cut(s) 507, 555, 1399
MspA1I CMGCKG 1 cut(s) 308
MspCI CTTAAG 1 cut(s) 506
MspI CCGG 1 cut(s) 1051
MspR9I CCNGG 4 cut(s) 112, 399, 1015, 1052
MunI CAATTG 1 cut(s) 1035
MvaI CCWGG 3 cut(s) 112, 399, 1015
MwoI GCNNNNNNNGC 5 cut(s) 41, 146, 155, 188, 1356
NciI CCSGG 1 cut(s) 1052
NcoI CCATGG 2 cut(s) 468, 1006
NdeI CATATG 1 cut(s) 289
NdeII GATC 4 cut(s) 91, 462, 1010, 1078
NlaIII CATG 9 cut(s) 149, 219, 224, 472, 732, 802, 986, 1010, 1302
NlaIV GGNNCC 4 cut(s) 213, 719, 1012, 1382
NsiI ATGCAT 1 cut(s) 804
NspI RCATGY 2 cut(s) 732, 802
NspV TTCGAA 1 cut(s) 255
PaeI GCATGC 1 cut(s) 802
PaeR7I CTCGAG 1 cut(s) 278
PciI ACATGT 1 cut(s) 728
PciSI GCTCTTC 2 cut(s) 447, 1368
PdmI GAANNNNTTC 2 cut(s) 441, 1327
PfeI GAWTC 5 cut(s) 168, 296, 564, 616, 1085
PkrI GCNGC 8 cut(s) 303, 487, 529, 826, 898, 933, 1180, 1380
PleI GAGTC 1 cut(s) 808
PmaCI CACGTG 1 cut(s) 632
PmlI CACGTG 1 cut(s) 632
PpsI GAGTC 1 cut(s) 808
Ppu21I YACGTR 1 cut(s) 632
PscI ACATGT 1 cut(s) 728
PshBI ATTAAT 1 cut(s) 555
Psp6I CCWGG 3 cut(s) 110, 397, 1013
PspCI CACGTG 1 cut(s) 632
PspGI CCWGG 3 cut(s) 110, 397, 1013
PspN4I GGNNCC 4 cut(s) 213, 719, 1012, 1382
PstI CTGCAG 1 cut(s) 1322
PstNI CAGNNNCTG 1 cut(s) 1326
PsuI RGATCY 1 cut(s) 1010
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 5 cut(s) 30, 595, 792, 1094, 1290
RsaNI GTAC 5 cut(s) 29, 594, 791, 1093, 1289
SapI GCTCTTC 2 cut(s) 447, 1368
SaqAI TTAA 3 cut(s) 507, 555, 1399
SatI GCNGC 8 cut(s) 302, 486, 528, 825, 897, 932, 1179, 1379
Sau3AI GATC 4 cut(s) 91, 462, 1010, 1078
SchI GAGTC 1 cut(s) 808
ScrFI CCNGG 4 cut(s) 112, 399, 1015, 1052
SduI GDGCHC 4 cut(s) 84, 214, 391, 982
SfaNI GCATC 2 cut(s) 384, 811
SfcI CTRYAG 2 cut(s) 489, 1318
Sfr274I CTCGAG 1 cut(s) 278
SfuI TTCGAA 1 cut(s) 255
SlaI CTCGAG 1 cut(s) 278
SmlI CTYRAG 3 cut(s) 83, 278, 506
SmoI CTYRAG 3 cut(s) 83, 278, 506
SphI GCATGC 1 cut(s) 802
Sse9I AATT 4 cut(s) 257, 556, 1035, 1208
SsiI CCGC 4 cut(s) 302, 1115, 1154, 1378
SspI AATATT 1 cut(s) 664
SspMI CTAG 2 cut(s) 806, 1022
StyD4I CCNGG 4 cut(s) 110, 397, 1013, 1050
StyI CCWWGG 3 cut(s) 468, 691, 1006
TaaI ACNGT 8 cut(s) 8, 135, 203, 240, 493, 686, 1310, 1328
TaiI ACGT 1 cut(s) 634
TaqI TCGA 5 cut(s) 90, 255, 279, 1066, 1371
TasI AATT 4 cut(s) 257, 556, 1035, 1208
TatI WGTACW 2 cut(s) 593, 1288
TauI GCSGC 2 cut(s) 304, 1381
TfiI GAWTC 5 cut(s) 168, 296, 564, 616, 1085
Tru1I TTAA 3 cut(s) 507, 555, 1399
Tru9I TTAA 3 cut(s) 507, 555, 1399
TscAI CASTG 6 cut(s) 53, 138, 396, 618, 691, 1288
TseI GCWGC 6 cut(s) 485, 527, 824, 896, 931, 1178
TspDTI ATGAA 7 cut(s) 17, 420, 438, 541, 608, 776, 1056
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 6 cut(s) 53, 138, 396, 618, 691, 1288
Vha464I CTTAAG 1 cut(s) 506
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 1 cut(s) 1208
XbaI TCTAGA 1 cut(s) 805
XceI RCATGY 2 cut(s) 732, 802
XcmI CCANNNNNNNNNTGG 1 cut(s) 728
XhoI CTCGAG 1 cut(s) 278
XmiI GTMKAC 3 cut(s) 127, 273, 1303
XmnI GAANNNNTTC 2 cut(s) 441, 1327
XspI CTAG 2 cut(s) 806, 1022
Zsp2I ATGCAT 1 cut(s) 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.