RchiOBHm_Chr7g0184641

Transmembrane Fragile-X-F protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
5129960 .. 5136874
6915 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16473

Sequence Viewer

Length: 1407 bp
ATGATGAACTGGCGGAGAGTGTTGAAGTCCGTCCAGGCCTTAGCAGCCCACAGCCTGCTATTCACCTTCACGCTCTTGCTCGTTCTCAAGCTCGACCACATCGTCTCCTACTCTTGGTGGATAATTTTTTTTCCACTTTGGATATTTCATGCAGTTGTTGCCCGAGGAAGATTCTCACTACCCGCTCCATCAGTTCCACACAGTCGTCATTGGGCGCCATGTCATGCTGTTGTGGCCACACCATTGCTTATTGCATTTGAGTTGCTCCTCTGTATATATCTTGAAAGTCGTTATGTTCACAGTTTTGCAGCTGTCAACTTAAAGGTTGTCTTTCTTCCCTTACTGGCATTCGAAGTAATTATTCTCATTGACAATTTCAGAATGTGTAAGGCTCTAATGCCAGGGGATGATGAAAACATGAATGATGAGGCAATATGGGAGACACTTCCTCATTTCTGGGTTGCAATCTCCATGGTTTTCTTTGTTGCTGCTACAGTCTTCACCATGCTCAAGTTATCTGGTCATGTAAATGCCCTTGGCTGGTGGGATTTATTTATAAACTTTAGTATTGCAGAGTGCTTTGCGTTTCTTGTCTGTACAAAGTGGTCTAATCCAGTAATTCATCGAAATTCCCAAATAAGAGTAGCTACTTCATCTTCTACAACTATTAGATATCTTGACTGGAACAGCGGTCTAGTAGTTTCTGCAGAAGAGGATCAGCATCAAGATAGAATGTGTGGTCTGCAAGACATTGGCGGGCATGTTATGAAAATTCCGGTGATTGGTTTTCAAGTTCTCCTTTGTATGCGCCTTGAGGGAACCCCTGATCGTGCTAGACATATCCCACTTCCGGTTCTATTCTCTCCTCTTTTTCTACTACAAGGTGTTGGTGTAATATTTGCTGCATCTAGGTTGGTGGAGAAAATTGTACTTCTACTGCGTAGTGGAGCTGGCACAGGATTATATTTTAGATTTTCTTCCAGAGCACACGATTGCTTGGGGTTTTTGCACCATGGTTCCAGGCTACTTGGCTGGTGGTCAATAGATGAAGGAAGTTGTGAGGAACATGCCCGACTGTTTCATGAGGGGGCTTCAGGATACAACACTTTCTGTGGTTATCCACCTGAGATAGTGAAGAAAATGCCTAAAAAGGATCTCACTGAAGAGGTATGGAGACTTCAAGCAGCTCTTGGTGAACAGACAGAAATCACAAAATACAGTCAGCAGGAGTATGAAAGACTTCAAAATGAAAAAGTGTTATGCCGTGTTTGCTTTGAGGGAGATATCAGTGTGGTCCTGCTACCATGTAGGCATCGTGTTCTTTGCAGTACCTGCTGTGACAAGTGTAAAAAATGCCCAATATGCCGTGTTTCTATTGAGGAGCGCTTACCTGTGTATGATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

468

Amino Acids

53.35

Weight (kDa)

7.55

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_185A PF10269 29 - 293 3.3e-102 Transmembrane Fragile-X-F protein
zf-C3HC4_3 PF13920 418 - 461 3.2e-11 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 557
AasI GACNNNNNNGTC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 1340
AccB1I GGYRCC 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 185
AciI CCGC 4 cut(s) 13, 183, 690, 756
AclWI GGATC 2 cut(s) 723, 1161
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 2 cut(s) 628, 771
AcuI CTGAAG 2 cut(s) 1077, 1182
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 3 cut(s) 598, 930, 1330
AfeI AGCGCT 1 cut(s) 1385
AfiI CCNNNNNNNGG 4 cut(s) 114, 540, 782, 850
AgsI TTSAA 5 cut(s) 25, 284, 791, 1181, 1244
AjnI CCWGG 3 cut(s) 33, 400, 1019
AluBI AGCT 5 cut(s) 91, 311, 647, 950, 1187
AluI AGCT 5 cut(s) 91, 311, 647, 950, 1187
Alw21I GWGCWC 1 cut(s) 988
Alw26I GTCTC 3 cut(s) 109, 434, 1168
AlwI GGATC 2 cut(s) 723, 1161
AlwNI CAGNNNCTG 1 cut(s) 1332
Ama87I CYCGRG 1 cut(s) 162
Aor51HI AGCGCT 1 cut(s) 1385
AoxI GGCC 2 cut(s) 36, 234
ApeKI GCWGC 5 cut(s) 44, 308, 488, 902, 1184
ApoI RAATTY 2 cut(s) 628, 771
Asp700I GAANNNNTTC 1 cut(s) 1239
AspLEI GCGC 3 cut(s) 217, 810, 1386
AspS9I GGNCC 1 cut(s) 1294
AsuHPI GGTGA 4 cut(s) 55, 493, 790, 1205
AsuII TTCGAA 1 cut(s) 351
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 1294
BalI TGGCCA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 214
BarI GAAGNNNNNNTAC 2 cut(s) 1161, 1193
BbsI GAAGAC 1 cut(s) 490
Bbv12I GWGCWC 1 cut(s) 988
BbvI GCAGC 5 cut(s) 56, 320, 475, 889, 1196
BccI CCATC 1 cut(s) 196
BceAI ACGGC 2 cut(s) 1248, 1350
BciT130I CCWGG 3 cut(s) 35, 402, 1021
BciVI GTATCC 1 cut(s) 1091
BcoDI GTCTC 3 cut(s) 109, 434, 1168
BfaI CTAG 4 cut(s) 695, 834, 909, 1405
BfmI CTRYAG 2 cut(s) 492, 705
BfoI RGCGCY 2 cut(s) 218, 1387
BfuAI ACCTGC 1 cut(s) 1340
BfuI GTATCC 1 cut(s) 1091
BisI GCNGC 5 cut(s) 45, 309, 489, 903, 1185
BlsI GCNGC 5 cut(s) 46, 310, 490, 904, 1186
Bme1390I CCNGG 3 cut(s) 35, 402, 1021
Bme18I GGWCC 1 cut(s) 1294
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 1294
BmiI GGNNCC 3 cut(s) 216, 820, 1018
BmrFI CCNGG 3 cut(s) 35, 402, 1021
BmsI GCATC 3 cut(s) 730, 914, 1321
BpiI GAAGAC 1 cut(s) 490
Bpu10I CCTNAGC 1 cut(s) 40
Bpu14I TTCGAA 1 cut(s) 351
BpuEI CTTGAG 3 cut(s) 71, 494, 833
BsaBI GATNNNNATC 1 cut(s) 720
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 5 cut(s) 163, 401, 471, 535, 1012
BsaWI WCCGGW 2 cut(s) 775, 850
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 540, 782, 850
Bse1I ACTGG 4 cut(s) 14, 348, 614, 686
Bse3DI GCAATG 1 cut(s) 242
Bse8I GATNNNNATC 1 cut(s) 720
BseBI CCWGG 3 cut(s) 35, 402, 1021
BseDI CCNNGG 5 cut(s) 163, 401, 471, 535, 1012
BseGI GGATG 1 cut(s) 412
BseJI GATNNNNATC 1 cut(s) 720
BseLI CCNNNNNNNGG 4 cut(s) 114, 540, 782, 850
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 1116
BseNI ACTGG 4 cut(s) 14, 348, 614, 686
BseRI GAGGAG 3 cut(s) 257, 855, 1394
BseXI GCAGC 5 cut(s) 56, 320, 475, 889, 1196
BshFI GGCC 2 cut(s) 38, 236
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 988
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 776, 851
BslI CCNNNNNNNGG 4 cut(s) 114, 540, 782, 850
BsmAI GTCTC 3 cut(s) 109, 434, 1168
BsmBI CGTCTC 1 cut(s) 109
BsmI GAATGC 1 cut(s) 347
BsnI GGCC 2 cut(s) 38, 236
BsoBI CYCGRG 1 cut(s) 162
Bsp119I TTCGAA 1 cut(s) 351
Bsp1286I GDGCHC 1 cut(s) 988
Bsp1407I TGTACA 1 cut(s) 596
Bsp143I GATC 3 cut(s) 715, 826, 1153
Bsp19I CCATGG 2 cut(s) 471, 1012
BspACI CCGC 4 cut(s) 13, 183, 690, 756
BspANI GGCC 2 cut(s) 38, 236
BspCNI CTCAG 1 cut(s) 1117
BspHI TCATGA 1 cut(s) 1081
BspLI GGNNCC 3 cut(s) 216, 820, 1018
BspMAI CTGCAG 1 cut(s) 709
BspMI ACCTGC 1 cut(s) 1340
BspPI GGATC 2 cut(s) 723, 1161
BspT104I TTCGAA 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 214
BsrBI CCGCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 596
BsrI ACTGG 4 cut(s) 14, 348, 614, 686
BssECI CCNNGG 5 cut(s) 163, 401, 471, 535, 1012
BssMI GATC 3 cut(s) 715, 826, 1153
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 3 cut(s) 471, 535, 1012
Bst2UI CCWGG 3 cut(s) 35, 402, 1021
Bst4CI ACNGT 5 cut(s) 203, 302, 496, 1077, 1220
Bst6I CTCTTC 2 cut(s) 705, 1158
BstACI GRCGYC 1 cut(s) 215
BstAPI GCANNNNNTGC 2 cut(s) 158, 1332
BstAUI TGTACA 1 cut(s) 596
BstBI TTCGAA 1 cut(s) 351
BstC8I GCNNGC 3 cut(s) 56, 758, 952
BstDEI CTNAG 2 cut(s) 40, 1125
BstDSI CCRYGG 2 cut(s) 471, 1012
BstF5I GGATG 1 cut(s) 412
BstH2I RGCGCY 2 cut(s) 218, 1387
BstHHI GCGC 3 cut(s) 217, 810, 1386
BstKTI GATC 3 cut(s) 718, 829, 1156
BstMAI GTCTC 3 cut(s) 109, 434, 1168
BstMBI GATC 3 cut(s) 715, 826, 1153
BstMWI GCNNNNNNNGC 6 cut(s) 44, 158, 233, 1269, 1332, 1362
BstNI CCWGG 3 cut(s) 35, 402, 1021
BstNSI RCATGY 2 cut(s) 764, 1070
BstSCI CCNGG 3 cut(s) 33, 400, 1019
BstSFI CTRYAG 2 cut(s) 492, 705
BstV1I GCAGC 5 cut(s) 56, 320, 475, 889, 1196
BstV2I GAAGAC 1 cut(s) 490
BstX2I RGATCY 1 cut(s) 1153
BstYI RGATCY 1 cut(s) 1153
BsuI GTATCC 1 cut(s) 1091
BsuRI GGCC 2 cut(s) 38, 236
BtgI CCRYGG 2 cut(s) 471, 1012
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 2 cut(s) 1158, 1294
BveI ACCTGC 1 cut(s) 1340
Cac8I GCNNGC 3 cut(s) 56, 758, 952
CaiI CAGNNNCTG 1 cut(s) 1332
CciI TCATGA 1 cut(s) 1081
CfoI GCGC 3 cut(s) 217, 810, 1386
Cfr13I GGNCC 1 cut(s) 1294
Csp6I GTAC 3 cut(s) 597, 929, 1329
CviQI GTAC 3 cut(s) 597, 929, 1329
DdeI CTNAG 2 cut(s) 40, 1125
DinI GGCGCC 1 cut(s) 216
DpnI GATC 3 cut(s) 717, 828, 1155
DpnII GATC 3 cut(s) 715, 826, 1153
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 2 cut(s) 705, 1158
EarI CTCTTC 2 cut(s) 705, 1158
EciI GGCGGA 1 cut(s) 28
Eco130I CCWWGG 3 cut(s) 471, 535, 1012
Eco147I AGGCCT 1 cut(s) 38
Eco32I GATATC 2 cut(s) 674, 1285
Eco47I GGWCC 1 cut(s) 1294
Eco47III AGCGCT 1 cut(s) 1385
Eco57I CTGAAG 2 cut(s) 1077, 1182
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 3 cut(s) 33, 400, 1019
EcoRV GATATC 2 cut(s) 674, 1285
EcoT14I CCWWGG 3 cut(s) 471, 535, 1012
EgeI GGCGCC 1 cut(s) 216
EheI GGCGCC 1 cut(s) 216
ErhI CCWWGG 3 cut(s) 471, 535, 1012
Esp3I CGTCTC 1 cut(s) 109
FalI AAGNNNNNCTT 6 cut(s) 314, 346, 783, 815, 1173, 1205
FauI CCCGC 2 cut(s) 190, 749
Fnu4HI GCNGC 5 cut(s) 45, 309, 489, 903, 1185
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 5 cut(s) 45, 309, 489, 903, 1185
FspBI CTAG 4 cut(s) 695, 834, 909, 1405
GlaI GCGC 3 cut(s) 216, 809, 1385
GluI GCNGC 5 cut(s) 45, 309, 489, 903, 1185
HaeII RGCGCY 2 cut(s) 218, 1387
HaeIII GGCC 2 cut(s) 38, 236
HapII CCGG 2 cut(s) 776, 851
HhaI GCGC 3 cut(s) 217, 810, 1386
Hin1I GRCGYC 1 cut(s) 215
Hin6I GCGC 3 cut(s) 215, 808, 1384
HinP1I GCGC 3 cut(s) 215, 808, 1384
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 1 cut(s) 171
HpaII CCGG 2 cut(s) 776, 851
HphI GGTGA 4 cut(s) 55, 493, 790, 1205
Hpy166II GTNNAC 3 cut(s) 298, 316, 1196
Hpy188I TCNGA 1 cut(s) 380
Hpy188III TCNNGA 6 cut(s) 281, 677, 725, 981, 1082, 1095
Hpy8I GTNNAC 3 cut(s) 298, 316, 1196
HpyAV CCTTC 2 cut(s) 76, 1043
HpyCH4III ACNGT 5 cut(s) 203, 302, 496, 1077, 1220
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 158, 233, 1269, 1332, 1362
HpyF3I CTNAG 2 cut(s) 40, 1125
Hsp92I GRCGYC 1 cut(s) 215
HspAI GCGC 3 cut(s) 215, 808, 1384
KasI GGCGCC 1 cut(s) 214
Kzo9I GATC 3 cut(s) 715, 826, 1153
LmnI GCTCC 4 cut(s) 190, 270, 947, 1381
Lsp1109I GCAGC 5 cut(s) 56, 320, 475, 889, 1196
LweI GCATC 3 cut(s) 730, 914, 1321
MaeI CTAG 4 cut(s) 695, 834, 909, 1405
MaeIII GTNAC 1 cut(s) 1337
MalI GATC 3 cut(s) 717, 828, 1155
MbiI CCGCTC 1 cut(s) 185
MboI GATC 3 cut(s) 715, 826, 1153
MboII GAAGA 8 cut(s) 180, 326, 490, 648, 722, 969, 1147, 1175
MflI RGATCY 1 cut(s) 1153
MhlI GDGCHC 1 cut(s) 988
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 7 cut(s) 123, 357, 373, 618, 628, 771, 924
MluNI TGGCCA 1 cut(s) 236
Mly113I GGCGCC 1 cut(s) 215
Mox20I TGGCCA 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 1239
MscI TGGCCA 1 cut(s) 236
MseI TTAA 1 cut(s) 320
MslI CAYNNNNRTG 1 cut(s) 528
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 2 cut(s) 311, 690
MspI CCGG 2 cut(s) 776, 851
MspR9I CCNGG 3 cut(s) 35, 402, 1021
Mva1269I GAATGC 1 cut(s) 347
MvaI CCWGG 3 cut(s) 35, 402, 1021
MwoI GCNNNNNNNGC 6 cut(s) 44, 158, 233, 1269, 1332, 1362
NarI GGCGCC 1 cut(s) 215
NcoI CCATGG 2 cut(s) 471, 1012
NdeII GATC 3 cut(s) 715, 826, 1153
NlaIV GGNNCC 3 cut(s) 216, 820, 1018
NmuCI GTSAC 1 cut(s) 1337
NspI RCATGY 2 cut(s) 764, 1070
NspV TTCGAA 1 cut(s) 351
PagI TCATGA 1 cut(s) 1081
PceI AGGCCT 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 1239
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 5 cut(s) 46, 310, 490, 904, 1186
PluTI GGCGCC 1 cut(s) 218
PsiI TTATAA 1 cut(s) 557
Psp6I CCWGG 3 cut(s) 33, 400, 1019
PspGI CCWGG 3 cut(s) 33, 400, 1019
PspN4I GGNNCC 3 cut(s) 216, 820, 1018
PspPI GGNCC 1 cut(s) 1294
PstI CTGCAG 1 cut(s) 709
PstNI CAGNNNCTG 1 cut(s) 1332
PsuI RGATCY 1 cut(s) 1153
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 3 cut(s) 598, 930, 1330
RsaNI GTAC 3 cut(s) 597, 929, 1329
RseI CAYNNNNRTG 1 cut(s) 528
SaqAI TTAA 1 cut(s) 320
SatI GCNGC 5 cut(s) 45, 309, 489, 903, 1185
Sau3AI GATC 3 cut(s) 715, 826, 1153
Sau96I GGNCC 1 cut(s) 1294
ScrFI CCNGG 3 cut(s) 35, 402, 1021
SduI GDGCHC 1 cut(s) 988
SfaNI GCATC 3 cut(s) 730, 914, 1321
SfcI CTRYAG 2 cut(s) 492, 705
SfoI GGCGCC 1 cut(s) 216
SfuI TTCGAA 1 cut(s) 351
SinI GGWCC 1 cut(s) 1294
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 3 cut(s) 86, 509, 812
SmoI CTYRAG 3 cut(s) 86, 509, 812
Sse9I AATT 7 cut(s) 123, 357, 373, 618, 628, 771, 924
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 4 cut(s) 13, 183, 690, 756
SspDI GGCGCC 1 cut(s) 214
SspI AATATT 1 cut(s) 897
SspMI CTAG 4 cut(s) 695, 834, 909, 1405
StuI AGGCCT 1 cut(s) 38
StyD4I CCNGG 3 cut(s) 33, 400, 1019
StyI CCWWGG 3 cut(s) 471, 535, 1012
TaaI ACNGT 5 cut(s) 203, 302, 496, 1077, 1220
TaqI TCGA 3 cut(s) 93, 351, 625
TasI AATT 7 cut(s) 123, 357, 373, 618, 628, 771, 924
TatI WGTACW 2 cut(s) 596, 928
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 320
Tru9I TTAA 1 cut(s) 320
TscAI CASTG 2 cut(s) 1165, 1294
TseFI GTSAC 1 cut(s) 1337
TseI GCWGC 5 cut(s) 44, 308, 488, 902, 1184
Tsp45I GTSAC 1 cut(s) 1337
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 2 cut(s) 1165, 1294
VpaK11BI GGWCC 1 cut(s) 1294
XapI RAATTY 2 cut(s) 628, 771
XceI RCATGY 2 cut(s) 764, 1070
XmnI GAANNNNTTC 1 cut(s) 1239
XspI CTAG 4 cut(s) 695, 834, 909, 1405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.