Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009000

Physical Location & Seq

Genomic Coordinates Forward (+)

17039493 .. 17045897

Gene Structure 6405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G217400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGATGAACTGGCGGAGAGTGTTGAAGTCCGTACAGGCCTTAGCAGCCCACAGCCTCCTCTTCACCTTCACGCTCTTGCTCGTTCTCAAGCTCGACCATGTCACCTCCTACTCTTGGTGGATAATTTTCTTTCCACTTTGGATATTTCATGCTGTTGTTGCCCGAGGAAGATTCTCATTACCTGCTCCATCAGTTCCACACAGTCGTCATTGGGCACCATGTCATGCAGTTGTGGCCACACCATTGCTTATTGCGTTTGAGTTGCTCCTTTGTATATATCTTGAAAGCATTTATGTTCACGGCTTTGCGGCTGTCAACTTGAAGGTTGTCTTTCTTCCCTTACTGGCATTCGAAATAATTATTCTAATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCGGGGGATGATGAAAGCATGAATGATGAGGCAATATGGGAGACACTTCCTCATTTCTGGGTAGCAATCTCCATGGTTTTCTTTGTTGCTGCTACAATCTTCACCCTGCTTAAGTTATGCGGTGAAGTAGGTGCTCTTGGTTGGTGGGATTTATTTATAAATTTTGGAATTGCAGAGTGCTTTTCCTTTCTTGTCTGTACAAAGTGGTCTAATCCAGTGATTCATAGAAATTCTCGCACAAGAGAAGCTACTTCATCTTCTACAACCATCAGATATCTTGACTGGAATAGTGGTTTAGTAGTTTCAGCAGAAGAGGATCAACATCGAGATAGAATGTGTGGTCTGCAAGATATTGGTGGGCATCTTATGAAAATTCCCGTGATTGGTTTTCAAGTTCTCCTTTGTATGCGCCTTGAGGGAACCCCAGCAAATGCTAGACATATCCCACTTCCAGTTCTCTTCTCTCCTCTTTTTTTACTCCAAGGTGCCGGTGTACTATTTTCTGCATGTAGGTTGGTGGAGAAAATTGTACTTTTGCTGCGTAGTGGGGCTGGCACCGGAATATATTTTAGAATTTCTTCCAGGGCTCACGACTGCTTTGGATTTTTGCACCATGGTTCCAGGCTACTGGGCTGGTGGTCAATAGATGAAGGAAGTCGTGAGGAACATGCCCGACTATTTCACGAGGGGGCTTCAGGATACAACACTTTCTGTGGCTATCCACCTGAGATCGTGAAGAAAATGCCTAAAAAGGATCTCACAGAGGAGGTTTGGAGACTTCAAGCAGCTCTTGGTGAACAGACAGAAATTACCAAATATAGCCAACAGGAGTATGAAAGACTTCAAAATGAAAAGGTGTTATGTCGGGTTTGCTTTGAGGGAGAGATCAGCGTGGTCTTGCTACCGTGTAGGCATCGCGTCCTTTGCAGTACCTGCTGTGACAAGTGTAAAAAATGCCCAATATGCCGTGTTGGTATTGAGGAGCGCTTACCTGTGTATGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_185A zf-C3HC4_3

Protein Analysis

469

Amino Acids

53.25

Weight (kDa)

7.53

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18470 AT1G18470 AT1G73950 AT1G73950
fragaria_vesca	FvH4_5g12690 FvH4_5g12690 FvH4_5g12690 FvH4_5g12690 FvH4_5g12690
malus_domestica	MD06G1211300.v1.1 MD14G1222000.v1.1
prunus_persica	Prupe.5G217400_v2.0.a1
pyrus_communis	pycom06g18860 pycom14g18360
rosa_chinensis	RchiOBHm_Chr7g0184641
rosa_laevigata	RLG00000004963
rosa_multiflora	Rmu_ssc0000289.1_g000028
rosa_roxburghii	Rroxscaffold_3G00269460
rosa_samantha	Rh7BG068500 Rh7CG069300 Rh7DG068600
rosa_wichuraiana	Rw7G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
Acc36I	ACCTGC	2 cut(s)	190, 1340
AccB1I	GGYRCC	3 cut(s)	214, 884, 953
AccII	CGCG	1 cut(s)	1317
AciI	CCGC	3 cut(s)	13, 308, 519
AclWI	GGATC	2 cut(s)	723, 1161
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	4 cut(s)	559, 628, 771, 972
AcuI	CTGAAG	1 cut(s)	1077
AfaI	GTAC	5 cut(s)	33, 598, 894, 930, 1330
AfeI	AGCGCT	1 cut(s)	1385
AfiI	CCNNNNNNNGG	2 cut(s)	114, 782
AflII	CTTAAG	1 cut(s)	509
AgsI	TTSAA	6 cut(s)	25, 284, 322, 791, 1181, 1244
AjnI	CCWGG	2 cut(s)	980, 1019
AluBI	AGCT	3 cut(s)	91, 647, 1187
AluI	AGCT	3 cut(s)	91, 647, 1187
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	2 cut(s)	434, 1168
AlwI	GGATC	2 cut(s)	723, 1161
AlwNI	CAGNNNCTG	1 cut(s)	1332
Ama87I	CYCGRG	1 cut(s)	162
Aor51HI	AGCGCT	1 cut(s)	1385
AoxI	GGCC	2 cut(s)	36, 234
ApeKI	GCWGC	4 cut(s)	44, 488, 937, 1184
ApoI	RAATTY	4 cut(s)	559, 628, 771, 972
Asp700I	GAANNNNTTC	2 cut(s)	976, 1239
AspLEI	GCGC	2 cut(s)	810, 1386
AsuC2I	CCSGG	1 cut(s)	402
AsuHPI	GGTGA	5 cut(s)	55, 94, 493, 533, 1205
AsuII	TTCGAA	1 cut(s)	351
AvaI	CYCGRG	1 cut(s)	162
BaeGI	GKGCMC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	3 cut(s)	214, 884, 953
BanII	GRGCYC	2 cut(s)	394, 988
BauI	CACGAG	1 cut(s)	1082
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	4 cut(s)	56, 475, 924, 1196
BccI	CCATC	2 cut(s)	196, 674
BceAI	ACGGC	2 cut(s)	316, 1350
BciT130I	CCWGG	2 cut(s)	982, 1021
BciVI	GTATCC	1 cut(s)	1091
BcnI	CCSGG	1 cut(s)	402
BcoDI	GTCTC	2 cut(s)	434, 1168
BfaI	CTAG	1 cut(s)	834
BfoI	RGCGCY	1 cut(s)	1387
BfrI	CTTAAG	1 cut(s)	509
BfuAI	ACCTGC	2 cut(s)	190, 1340
BfuI	GTATCC	1 cut(s)	1091
BisI	GCNGC	5 cut(s)	45, 309, 489, 938, 1185
BlsI	GCNGC	5 cut(s)	46, 310, 490, 939, 1186
Bme1390I	CCNGG	3 cut(s)	402, 982, 1021
BmeT110I	CYCGRG	1 cut(s)	162
BmiI	GGNNCC	5 cut(s)	216, 820, 886, 955, 1018
BmrFI	CCNGG	3 cut(s)	402, 982, 1021
BmrI	ACTGGG	1 cut(s)	1037
BmsI	GCATC	2 cut(s)	769, 1321
BmuI	ACTGGG	1 cut(s)	1037
Bpu10I	CCTNAGC	1 cut(s)	40
Bpu14I	TTCGAA	1 cut(s)	351
BpuEI	CTTGAG	2 cut(s)	71, 833
BpuMI	CCSGG	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	720
BsaJI	CCNNGG	6 cut(s)	163, 401, 471, 880, 981, 1012
BsaWI	WCCGGW	1 cut(s)	956
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 782
Bse118I	RCCGGY	1 cut(s)	887
Bse1I	ACTGG	6 cut(s)	14, 348, 614, 686, 851, 1032
Bse3DI	GCAATG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	720
BseBI	CCWGG	2 cut(s)	982, 1021
BseDI	CCNNGG	6 cut(s)	163, 401, 471, 880, 981, 1012
BseGI	GGATG	1 cut(s)	412
BseJI	GATNNNNATC	1 cut(s)	720
BseLI	CCNNNNNNNGG	2 cut(s)	114, 782
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	1116
BseNI	ACTGG	6 cut(s)	14, 348, 614, 686, 851, 1032
BseRI	GAGGAG	4 cut(s)	47, 855, 1178, 1394
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	4 cut(s)	56, 475, 924, 1196
BseYI	CCCAGC	1 cut(s)	823
Bsh1236I	CGCG	1 cut(s)	1317
BshFI	GGCC	2 cut(s)	38, 236
BshNI	GGYRCC	3 cut(s)	214, 884, 953
BsiHKAI	GWGCWC	1 cut(s)	535
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	401, 888, 957
BslI	CCNNNNNNNGG	2 cut(s)	114, 782
BsmAI	GTCTC	2 cut(s)	434, 1168
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	2 cut(s)	38, 236
BsoBI	CYCGRG	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	351
Bsp1286I	GDGCHC	4 cut(s)	217, 394, 535, 988
Bsp1407I	TGTACA	1 cut(s)	596
Bsp143I	GATC	4 cut(s)	715, 1128, 1153, 1284
Bsp19I	CCATGG	2 cut(s)	471, 1012
BspACI	CCGC	3 cut(s)	13, 308, 519
BspANI	GGCC	2 cut(s)	38, 236
BspCNI	CTCAG	1 cut(s)	1117
BspFNI	CGCG	1 cut(s)	1317
BspLI	GGNNCC	5 cut(s)	216, 820, 886, 955, 1018
BspMI	ACCTGC	2 cut(s)	190, 1340
BspPI	GGATC	2 cut(s)	723, 1161
BspT104I	TTCGAA	1 cut(s)	351
BspT107I	GGYRCC	3 cut(s)	214, 884, 953
BspTI	CTTAAG	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	887
BsrGI	TGTACA	1 cut(s)	596
BsrI	ACTGG	6 cut(s)	14, 348, 614, 686, 851, 1032
BssAI	RCCGGY	1 cut(s)	887
BssECI	CCNNGG	6 cut(s)	163, 401, 471, 880, 981, 1012
BssMI	GATC	4 cut(s)	715, 1128, 1153, 1284
BssSI	CACGAG	1 cut(s)	1082
BssT1I	CCWWGG	3 cut(s)	471, 880, 1012
Bst2BI	CACGAG	1 cut(s)	1082
Bst2UI	CCWGG	2 cut(s)	982, 1021
Bst4CI	ACNGT	2 cut(s)	203, 1305
Bst6I	CTCTTC	3 cut(s)	65, 705, 863
BstAFI	CTTAAG	1 cut(s)	509
BstAPI	GCANNNNNTGC	1 cut(s)	1332
BstAUI	TGTACA	1 cut(s)	596
BstBI	TTCGAA	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	952
BstDEI	CTNAG	2 cut(s)	40, 1125
BstDSI	CCRYGG	2 cut(s)	471, 1012
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	1 cut(s)	1317
BstH2I	RGCGCY	1 cut(s)	1387
BstHHI	GCGC	2 cut(s)	810, 1386
BstKTI	GATC	4 cut(s)	718, 1131, 1156, 1287
BstMAI	GTCTC	2 cut(s)	434, 1168
BstMBI	GATC	4 cut(s)	715, 1128, 1153, 1284
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 158, 233, 1323, 1332, 1362
BstNI	CCWGG	2 cut(s)	982, 1021
BstNSI	RCATGY	2 cut(s)	909, 1070
BstSCI	CCNGG	3 cut(s)	400, 980, 1019
BstSLI	GKGCMC	1 cut(s)	217
BstUI	CGCG	1 cut(s)	1317
BstV1I	GCAGC	4 cut(s)	56, 475, 924, 1196
BstX2I	RGATCY	1 cut(s)	1153
BstXI	CCANNNNNNTGG	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	1153
BsuI	GTATCC	1 cut(s)	1091
BsuRI	GGCC	2 cut(s)	38, 236
BtgI	CCRYGG	2 cut(s)	471, 1012
BtgZI	GCGATG	1 cut(s)	1298
BtsCI	GGATG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	621
BveI	ACCTGC	2 cut(s)	190, 1340
Cac8I	GCNNGC	1 cut(s)	952
CaiI	CAGNNNCTG	1 cut(s)	1332
CfoI	GCGC	2 cut(s)	810, 1386
Cfr10I	RCCGGY	1 cut(s)	887
CseI	GACGC	1 cut(s)	1306
Csp6I	GTAC	5 cut(s)	32, 597, 893, 929, 1329
CviAII	CATG	9 cut(s)	98, 149, 219, 224, 418, 472, 906, 1013, 1067
CviQI	GTAC	5 cut(s)	32, 597, 893, 929, 1329
DdeI	CTNAG	2 cut(s)	40, 1125
DpnI	GATC	4 cut(s)	717, 1130, 1155, 1286
DpnII	GATC	4 cut(s)	715, 1128, 1153, 1284
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	3 cut(s)	65, 705, 863
EarI	CTCTTC	3 cut(s)	65, 705, 863
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	3 cut(s)	471, 880, 1012
Eco147I	AGGCCT	1 cut(s)	38
Eco24I	GRGCYC	2 cut(s)	394, 988
Eco32I	GATATC	1 cut(s)	674
Eco47III	AGCGCT	1 cut(s)	1385
Eco57I	CTGAAG	1 cut(s)	1077
Eco88I	CYCGRG	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	980, 1019
EcoRV	GATATC	1 cut(s)	674
EcoT14I	CCWWGG	3 cut(s)	471, 880, 1012
EcoT38I	GRGCYC	2 cut(s)	394, 988
ErhI	CCWWGG	3 cut(s)	471, 880, 1012
FaeI	CATG	9 cut(s)	101, 152, 222, 227, 421, 475, 909, 1016, 1070
FalI	AAGNNNNNCTT	6 cut(s)	314, 346, 783, 815, 1173, 1205
FatI	CATG	9 cut(s)	97, 148, 218, 223, 417, 471, 905, 1012, 1066
Fnu4HI	GCNGC	5 cut(s)	45, 309, 489, 938, 1185
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	2 cut(s)	394, 988
Fsp4HI	GCNGC	5 cut(s)	45, 309, 489, 938, 1185
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	2 cut(s)	809, 1385
GluI	GCNGC	5 cut(s)	45, 309, 489, 938, 1185
GsaI	CCCAGC	1 cut(s)	827
HaeII	RGCGCY	1 cut(s)	1387
HaeIII	GGCC	2 cut(s)	38, 236
HapII	CCGG	3 cut(s)	401, 888, 957
HgaI	GACGC	1 cut(s)	1306
HhaI	GCGC	2 cut(s)	810, 1386
Hin1II	CATG	9 cut(s)	101, 152, 222, 227, 421, 475, 909, 1016, 1070
Hin6I	GCGC	2 cut(s)	808, 1384
HinP1I	GCGC	2 cut(s)	808, 1384
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	2 cut(s)	171, 619
HpaII	CCGG	3 cut(s)	401, 888, 957
HphI	GGTGA	5 cut(s)	55, 94, 493, 533, 1205
Hpy166II	GTNNAC	4 cut(s)	298, 316, 893, 1196
Hpy188I	TCNGA	2 cut(s)	380, 671
Hpy188III	TCNNGA	8 cut(s)	281, 677, 725, 989, 1058, 1082, 1095, 1132
Hpy8I	GTNNAC	4 cut(s)	298, 316, 893, 1196
HpyAV	CCTTC	3 cut(s)	76, 316, 1043
HpyCH4III	ACNGT	2 cut(s)	203, 1305
HpyCH4V	TGCA	6 cut(s)	227, 572, 745, 905, 1009, 1326
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 158, 233, 1323, 1332, 1362
HpyF3I	CTNAG	2 cut(s)	40, 1125
Hsp92II	CATG	9 cut(s)	101, 152, 222, 227, 421, 475, 909, 1016, 1070
HspAI	GCGC	2 cut(s)	808, 1384
Kzo9I	GATC	4 cut(s)	715, 1128, 1153, 1284
LmnI	GCTCC	3 cut(s)	190, 270, 1381
Lsp1109I	GCAGC	4 cut(s)	56, 475, 924, 1196
LweI	GCATC	2 cut(s)	769, 1321
MaeI	CTAG	1 cut(s)	834
MaeIII	GTNAC	2 cut(s)	100, 1337
MalI	GATC	4 cut(s)	717, 1130, 1155, 1286
MboI	GATC	4 cut(s)	715, 1128, 1153, 1284
MboII	GAAGA	9 cut(s)	52, 180, 326, 490, 648, 722, 850, 969, 1147
MflI	RGATCY	1 cut(s)	1153
MhlI	GDGCHC	4 cut(s)	217, 394, 535, 988
MlsI	TGGCCA	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	236
Mox20I	TGGCCA	1 cut(s)	236
MroXI	GAANNNNTTC	2 cut(s)	976, 1239
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	236
MspCI	CTTAAG	1 cut(s)	509
MspI	CCGG	3 cut(s)	401, 888, 957
MspR9I	CCNGG	3 cut(s)	402, 982, 1021
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	982, 1021
MvnI	CGCG	1 cut(s)	1317
MwoI	GCNNNNNNNGC	6 cut(s)	44, 158, 233, 1323, 1332, 1362
NciI	CCSGG	1 cut(s)	402
NcoI	CCATGG	2 cut(s)	471, 1012
NdeII	GATC	4 cut(s)	715, 1128, 1153, 1284
NlaIII	CATG	9 cut(s)	101, 152, 222, 227, 421, 475, 909, 1016, 1070
NlaIV	GGNNCC	5 cut(s)	216, 820, 886, 955, 1018
NmuCI	GTSAC	2 cut(s)	100, 1337
NspI	RCATGY	2 cut(s)	909, 1070
NspV	TTCGAA	1 cut(s)	351
PceI	AGGCCT	1 cut(s)	38
PctI	GAATGC	1 cut(s)	347
PdmI	GAANNNNTTC	2 cut(s)	976, 1239
PfeI	GAWTC	2 cut(s)	171, 619
PflFI	GACNNNGTC	1 cut(s)	98
PkrI	GCNGC	5 cut(s)	46, 310, 490, 939, 1186
PsiI	TTATAA	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	980, 1019
PspFI	CCCAGC	1 cut(s)	823
PspGI	CCWGG	2 cut(s)	980, 1019
PspN4I	GGNNCC	5 cut(s)	216, 820, 886, 955, 1018
PstNI	CAGNNNCTG	1 cut(s)	1332
PsuI	RGATCY	1 cut(s)	1153
PsyI	GACNNNGTC	1 cut(s)	98
RsaI	GTAC	5 cut(s)	33, 598, 894, 930, 1330
RsaNI	GTAC	5 cut(s)	32, 597, 893, 929, 1329
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	5 cut(s)	45, 309, 489, 938, 1185
Sau3AI	GATC	4 cut(s)	715, 1128, 1153, 1284
ScrFI	CCNGG	3 cut(s)	402, 982, 1021
SduI	GDGCHC	4 cut(s)	217, 394, 535, 988
SfaNI	GCATC	2 cut(s)	769, 1321
SfuI	TTCGAA	1 cut(s)	351
SmlI	CTYRAG	3 cut(s)	86, 509, 812
SmoI	CTYRAG	3 cut(s)	86, 509, 812
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	3 cut(s)	13, 308, 519
SspMI	CTAG	1 cut(s)	834
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	3 cut(s)	400, 980, 1019
StyI	CCWWGG	3 cut(s)	471, 880, 1012
TaaI	ACNGT	2 cut(s)	203, 1305
TaqI	TCGA	3 cut(s)	93, 351, 724
TatI	WGTACW	3 cut(s)	596, 892, 928
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	171, 619
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	1 cut(s)	621
TseFI	GTSAC	2 cut(s)	100, 1337
TseI	GCWGC	4 cut(s)	44, 488, 937, 1184
Tsp45I	GTSAC	2 cut(s)	100, 1337
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	621
Tth111I	GACNNNGTC	1 cut(s)	98
Vha464I	CTTAAG	1 cut(s)	509
XapI	RAATTY	4 cut(s)	559, 628, 771, 972
XceI	RCATGY	2 cut(s)	909, 1070
XmnI	GAANNNNTTC	2 cut(s)	976, 1239
XspI	CTAG	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.