Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000289.1

Orthogroup ID

OG0009000

Physical Location & Seq

Genomic Coordinates Reverse (-)

146844 .. 152885

Gene Structure 6042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000289.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

atgatgaactggcggagagtgttgaagtccgtccaggccttagcagcccacagcctgctattcaccttcacgctcttgctcgttctcaagctcgaccacatcgtctcctactcttggtggataattttttttccactttggatatttcatgcagttgttgcccgaggaagattctcactacccgctccatcagttccacacagtcgtcattgggcgccatgtcatgctgttgtggccacaccattgcttattgcatttgagttgctcctctgtatatatcttgaaagtcgttatgctgtaaacttaaaggttgtctttcttcccttactggcattcgaagtaattattctcattgacaatttcagaatgtgtaaggctctaatgccaggggatgatgaaaacatgaatgatgaggcaatatgggagacacttcctcatttctgggttgcaatctccatggttttctttgttgctgctacagtcttcaccatgctcaagttatctggtcatgtaaatgcccttggctggtgggatttatttataaactttagtattgcagagtgctttgcgtttcttgtctgtacaaagtggtctaatccagtaattcatcgaaattcccaaataagagtagctacttcatcttctacaactattagatatcttgactggaacagcggtctagtagtttctgcagaagaggatcagcatcaagatagaatgtgtggtctgcaagacattggcgggcatgttatgaaaattccggtgattggttttcaagttctcctttgtatgcgccttgagggaacccctgatcgtgctagacatatcccacttccggttctattctctcctctttttctactacaaggtgttggtgtaatatttgctgcatctaggttggtggagaaaattgtacttctactgcgtagtggagctggcacaggattatattttagattttcttccagagcacacgattgcttggggtttttgcaccatggttccaggctacttggctggtggtcaatagatgaaggaagttgtgaggaacatgcccgactgtttcatgagggggcttcaggatacaacactttctgtggttatccacctgagatagtgaagaaaatgcctaaaaaggatctcactgaagaggtatggagacttcaagcagctcttggtgaacagacagaaatcacaaaatacagtcagcaggagtatgaaagacttcaaaatgaaaaagtgttatgccgtgtttgctttgagggagatatcagtgtggtcctgctaccatgtaggcatcgtgttctttgcagtacctgctgtgacaagtgtaaaaaatgcccaatatgccgtgtttctattgaggagcgcttacctgtgtatgatgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_185A zf-C3HC4_3

Protein Analysis

463

Amino Acids

52.8

Weight (kDa)

7.54

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18470 AT1G18470 AT1G73950 AT1G73950
fragaria_vesca	FvH4_5g12690 FvH4_5g12690 FvH4_5g12690 FvH4_5g12690 FvH4_5g12690
malus_domestica	MD06G1211300.v1.1 MD14G1222000.v1.1
prunus_persica	Prupe.5G217400_v2.0.a1
pyrus_communis	pycom06g18860 pycom14g18360
rosa_chinensis	RchiOBHm_Chr7g0184641
rosa_laevigata	RLG00000004963
rosa_multiflora	Rmu_ssc0000289.1_g000028
rosa_roxburghii	Rroxscaffold_3G00269460
rosa_samantha	Rh7BG068500 Rh7CG069300 Rh7DG068600
rosa_wichuraiana	Rw7G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	542
AasI	GACNNNNNNGTC	1 cut(s)	101
Acc36I	ACCTGC	1 cut(s)	1325
AccB1I	GGYRCC	1 cut(s)	214
AccBSI	CCGCTC	1 cut(s)	185
AciI	CCGC	4 cut(s)	13, 183, 675, 741
AclWI	GGATC	2 cut(s)	708, 1146
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	2 cut(s)	613, 756
AcuI	CTGAAG	2 cut(s)	1062, 1167
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	3 cut(s)	583, 915, 1315
AfeI	AGCGCT	1 cut(s)	1370
AfiI	CCNNNNNNNGG	4 cut(s)	114, 525, 767, 835
AgsI	TTSAA	5 cut(s)	25, 284, 776, 1166, 1229
AjnI	CCWGG	3 cut(s)	33, 385, 1004
AluBI	AGCT	4 cut(s)	91, 632, 935, 1172
AluI	AGCT	4 cut(s)	91, 632, 935, 1172
Alw21I	GWGCWC	1 cut(s)	973
Alw26I	GTCTC	3 cut(s)	109, 419, 1153
AlwI	GGATC	2 cut(s)	708, 1146
AlwNI	CAGNNNCTG	1 cut(s)	1317
Ama87I	CYCGRG	1 cut(s)	162
Aor51HI	AGCGCT	1 cut(s)	1370
AoxI	GGCC	2 cut(s)	36, 234
ApeKI	GCWGC	4 cut(s)	44, 473, 887, 1169
ApoI	RAATTY	2 cut(s)	613, 756
Asp700I	GAANNNNTTC	1 cut(s)	1224
AspLEI	GCGC	3 cut(s)	217, 795, 1371
AspS9I	GGNCC	1 cut(s)	1279
AsuHPI	GGTGA	4 cut(s)	55, 478, 775, 1190
AsuII	TTCGAA	1 cut(s)	336
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	1279
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	214
BarI	GAAGNNNNNNTAC	2 cut(s)	1146, 1178
BbsI	GAAGAC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	973
BbvI	GCAGC	4 cut(s)	56, 460, 874, 1181
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	2 cut(s)	1233, 1335
BciT130I	CCWGG	3 cut(s)	35, 387, 1006
BciVI	GTATCC	1 cut(s)	1076
BcoDI	GTCTC	3 cut(s)	109, 419, 1153
BfaI	CTAG	4 cut(s)	680, 819, 894, 1390
BfmI	CTRYAG	2 cut(s)	477, 690
BfoI	RGCGCY	2 cut(s)	218, 1372
BfuAI	ACCTGC	1 cut(s)	1325
BfuI	GTATCC	1 cut(s)	1076
BisI	GCNGC	4 cut(s)	45, 474, 888, 1170
BlsI	GCNGC	4 cut(s)	46, 475, 889, 1171
Bme1390I	CCNGG	3 cut(s)	35, 387, 1006
Bme18I	GGWCC	1 cut(s)	1279
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	1279
BmiI	GGNNCC	3 cut(s)	216, 805, 1003
BmrFI	CCNGG	3 cut(s)	35, 387, 1006
BmsI	GCATC	3 cut(s)	715, 899, 1306
BpiI	GAAGAC	1 cut(s)	475
Bpu10I	CCTNAGC	1 cut(s)	40
Bpu14I	TTCGAA	1 cut(s)	336
BpuEI	CTTGAG	3 cut(s)	71, 479, 818
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	5 cut(s)	163, 386, 456, 520, 997
BsaWI	WCCGGW	2 cut(s)	760, 835
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	4 cut(s)	114, 525, 767, 835
Bse1I	ACTGG	4 cut(s)	14, 333, 599, 671
Bse3DI	GCAATG	1 cut(s)	242
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	3 cut(s)	35, 387, 1006
BseDI	CCNNGG	5 cut(s)	163, 386, 456, 520, 997
BseGI	GGATG	1 cut(s)	397
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	4 cut(s)	114, 525, 767, 835
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	1101
BseNI	ACTGG	4 cut(s)	14, 333, 599, 671
BseRI	GAGGAG	3 cut(s)	257, 840, 1379
BseXI	GCAGC	4 cut(s)	56, 460, 874, 1181
BshFI	GGCC	2 cut(s)	38, 236
BshNI	GGYRCC	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	973
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	761, 836
BslI	CCNNNNNNNGG	4 cut(s)	114, 525, 767, 835
BsmAI	GTCTC	3 cut(s)	109, 419, 1153
BsmBI	CGTCTC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	38, 236
BsoBI	CYCGRG	1 cut(s)	162
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	973
Bsp1407I	TGTACA	1 cut(s)	581
Bsp143I	GATC	3 cut(s)	700, 811, 1138
Bsp19I	CCATGG	2 cut(s)	456, 997
BspACI	CCGC	4 cut(s)	13, 183, 675, 741
BspANI	GGCC	2 cut(s)	38, 236
BspCNI	CTCAG	1 cut(s)	1102
BspHI	TCATGA	1 cut(s)	1066
BspLI	GGNNCC	3 cut(s)	216, 805, 1003
BspMAI	CTGCAG	1 cut(s)	694
BspMI	ACCTGC	1 cut(s)	1325
BspPI	GGATC	2 cut(s)	708, 1146
BspT104I	TTCGAA	1 cut(s)	336
BspT107I	GGYRCC	1 cut(s)	214
BsrBI	CCGCTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	242
BsrGI	TGTACA	1 cut(s)	581
BsrI	ACTGG	4 cut(s)	14, 333, 599, 671
BssECI	CCNNGG	5 cut(s)	163, 386, 456, 520, 997
BssMI	GATC	3 cut(s)	700, 811, 1138
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	3 cut(s)	456, 520, 997
Bst2UI	CCWGG	3 cut(s)	35, 387, 1006
Bst4CI	ACNGT	4 cut(s)	203, 481, 1062, 1205
Bst6I	CTCTTC	2 cut(s)	690, 1143
BstACI	GRCGYC	1 cut(s)	215
BstAPI	GCANNNNNTGC	2 cut(s)	158, 1317
BstAUI	TGTACA	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	3 cut(s)	56, 743, 937
BstDEI	CTNAG	2 cut(s)	40, 1110
BstDSI	CCRYGG	2 cut(s)	456, 997
BstF5I	GGATG	1 cut(s)	397
BstH2I	RGCGCY	2 cut(s)	218, 1372
BstHHI	GCGC	3 cut(s)	217, 795, 1371
BstKTI	GATC	3 cut(s)	703, 814, 1141
BstMAI	GTCTC	3 cut(s)	109, 419, 1153
BstMBI	GATC	3 cut(s)	700, 811, 1138
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 158, 233, 1254, 1317, 1347
BstNI	CCWGG	3 cut(s)	35, 387, 1006
BstNSI	RCATGY	2 cut(s)	749, 1055
BstSCI	CCNGG	3 cut(s)	33, 385, 1004
BstSFI	CTRYAG	2 cut(s)	477, 690
BstV1I	GCAGC	4 cut(s)	56, 460, 874, 1181
BstV2I	GAAGAC	1 cut(s)	475
BstX2I	RGATCY	1 cut(s)	1138
BstYI	RGATCY	1 cut(s)	1138
BsuI	GTATCC	1 cut(s)	1076
BsuRI	GGCC	2 cut(s)	38, 236
BtgI	CCRYGG	2 cut(s)	456, 997
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	2 cut(s)	1143, 1279
BveI	ACCTGC	1 cut(s)	1325
Cac8I	GCNNGC	3 cut(s)	56, 743, 937
CaiI	CAGNNNCTG	1 cut(s)	1317
CciI	TCATGA	1 cut(s)	1066
CfoI	GCGC	3 cut(s)	217, 795, 1371
Cfr13I	GGNCC	1 cut(s)	1279
Csp6I	GTAC	3 cut(s)	582, 914, 1314
CviQI	GTAC	3 cut(s)	582, 914, 1314
DdeI	CTNAG	2 cut(s)	40, 1110
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	3 cut(s)	702, 813, 1140
DpnII	GATC	3 cut(s)	700, 811, 1138
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	2 cut(s)	690, 1143
EarI	CTCTTC	2 cut(s)	690, 1143
EciI	GGCGGA	1 cut(s)	28
Eco130I	CCWWGG	3 cut(s)	456, 520, 997
Eco147I	AGGCCT	1 cut(s)	38
Eco32I	GATATC	2 cut(s)	659, 1270
Eco47I	GGWCC	1 cut(s)	1279
Eco47III	AGCGCT	1 cut(s)	1370
Eco57I	CTGAAG	2 cut(s)	1062, 1167
Eco88I	CYCGRG	1 cut(s)	162
EcoRII	CCWGG	3 cut(s)	33, 385, 1004
EcoRV	GATATC	2 cut(s)	659, 1270
EcoT14I	CCWWGG	3 cut(s)	456, 520, 997
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
ErhI	CCWWGG	3 cut(s)	456, 520, 997
Esp3I	CGTCTC	1 cut(s)	109
FalI	AAGNNNNNCTT	6 cut(s)	299, 331, 768, 800, 1158, 1190
FauI	CCCGC	2 cut(s)	190, 734
Fnu4HI	GCNGC	4 cut(s)	45, 474, 888, 1170
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	4 cut(s)	45, 474, 888, 1170
FspBI	CTAG	4 cut(s)	680, 819, 894, 1390
GlaI	GCGC	3 cut(s)	216, 794, 1370
GluI	GCNGC	4 cut(s)	45, 474, 888, 1170
HaeII	RGCGCY	2 cut(s)	218, 1372
HaeIII	GGCC	2 cut(s)	38, 236
HapII	CCGG	2 cut(s)	761, 836
HhaI	GCGC	3 cut(s)	217, 795, 1371
Hin1I	GRCGYC	1 cut(s)	215
Hin6I	GCGC	3 cut(s)	215, 793, 1369
HinP1I	GCGC	3 cut(s)	215, 793, 1369
HinfI	GANTC	1 cut(s)	171
HpaII	CCGG	2 cut(s)	761, 836
HphI	GGTGA	4 cut(s)	55, 478, 775, 1190
Hpy166II	GTNNAC	2 cut(s)	301, 1181
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	6 cut(s)	281, 662, 710, 966, 1067, 1080
Hpy8I	GTNNAC	2 cut(s)	301, 1181
HpyAV	CCTTC	2 cut(s)	76, 1028
HpyCH4III	ACNGT	4 cut(s)	203, 481, 1062, 1205
HpyCH4V	TGCA	9 cut(s)	152, 254, 449, 557, 692, 730, 890, 994, 1311
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 158, 233, 1254, 1317, 1347
HpyF3I	CTNAG	2 cut(s)	40, 1110
Hsp92I	GRCGYC	1 cut(s)	215
HspAI	GCGC	3 cut(s)	215, 793, 1369
KasI	GGCGCC	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	700, 811, 1138
LmnI	GCTCC	4 cut(s)	190, 270, 932, 1366
Lsp1109I	GCAGC	4 cut(s)	56, 460, 874, 1181
LweI	GCATC	3 cut(s)	715, 899, 1306
MaeI	CTAG	4 cut(s)	680, 819, 894, 1390
MaeIII	GTNAC	1 cut(s)	1322
MalI	GATC	3 cut(s)	702, 813, 1140
MbiI	CCGCTC	1 cut(s)	185
MboI	GATC	3 cut(s)	700, 811, 1138
MboII	GAAGA	8 cut(s)	180, 311, 475, 633, 707, 954, 1132, 1160
MflI	RGATCY	1 cut(s)	1138
MhlI	GDGCHC	1 cut(s)	973
MlsI	TGGCCA	1 cut(s)	236
MluCI	AATT	7 cut(s)	123, 342, 358, 603, 613, 756, 909
MluNI	TGGCCA	1 cut(s)	236
Mly113I	GGCGCC	1 cut(s)	215
Mox20I	TGGCCA	1 cut(s)	236
MroXI	GAANNNNTTC	1 cut(s)	1224
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	513
Msp20I	TGGCCA	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	675
MspI	CCGG	2 cut(s)	761, 836
MspR9I	CCNGG	3 cut(s)	35, 387, 1006
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	3 cut(s)	35, 387, 1006
MwoI	GCNNNNNNNGC	6 cut(s)	44, 158, 233, 1254, 1317, 1347
NarI	GGCGCC	1 cut(s)	215
NcoI	CCATGG	2 cut(s)	456, 997
NdeII	GATC	3 cut(s)	700, 811, 1138
NlaIV	GGNNCC	3 cut(s)	216, 805, 1003
NmuCI	GTSAC	1 cut(s)	1322
NspI	RCATGY	2 cut(s)	749, 1055
NspV	TTCGAA	1 cut(s)	336
PagI	TCATGA	1 cut(s)	1066
PceI	AGGCCT	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	332
PdmI	GAANNNNTTC	1 cut(s)	1224
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	4 cut(s)	46, 475, 889, 1171
PluTI	GGCGCC	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	542
Psp6I	CCWGG	3 cut(s)	33, 385, 1004
PspGI	CCWGG	3 cut(s)	33, 385, 1004
PspN4I	GGNNCC	3 cut(s)	216, 805, 1003
PspPI	GGNCC	1 cut(s)	1279
PstI	CTGCAG	1 cut(s)	694
PstNI	CAGNNNCTG	1 cut(s)	1317
PsuI	RGATCY	1 cut(s)	1138
RsaI	GTAC	3 cut(s)	583, 915, 1315
RsaNI	GTAC	3 cut(s)	582, 914, 1314
RseI	CAYNNNNRTG	1 cut(s)	513
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	4 cut(s)	45, 474, 888, 1170
Sau3AI	GATC	3 cut(s)	700, 811, 1138
Sau96I	GGNCC	1 cut(s)	1279
ScrFI	CCNGG	3 cut(s)	35, 387, 1006
SduI	GDGCHC	1 cut(s)	973
SfaNI	GCATC	3 cut(s)	715, 899, 1306
SfcI	CTRYAG	2 cut(s)	477, 690
SfoI	GGCGCC	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	1 cut(s)	1279
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	3 cut(s)	86, 494, 797
SmoI	CTYRAG	3 cut(s)	86, 494, 797
Sse9I	AATT	7 cut(s)	123, 342, 358, 603, 613, 756, 909
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	4 cut(s)	13, 183, 675, 741
SspDI	GGCGCC	1 cut(s)	214
SspI	AATATT	1 cut(s)	882
SspMI	CTAG	4 cut(s)	680, 819, 894, 1390
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	3 cut(s)	33, 385, 1004
StyI	CCWWGG	3 cut(s)	456, 520, 997
TaaI	ACNGT	4 cut(s)	203, 481, 1062, 1205
TaqI	TCGA	3 cut(s)	93, 336, 610
TasI	AATT	7 cut(s)	123, 342, 358, 603, 613, 756, 909
TatI	WGTACW	2 cut(s)	581, 913
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	2 cut(s)	1150, 1279
TseFI	GTSAC	1 cut(s)	1322
TseI	GCWGC	4 cut(s)	44, 473, 887, 1169
Tsp45I	GTSAC	1 cut(s)	1322
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	2 cut(s)	1150, 1279
VpaK11BI	GGWCC	1 cut(s)	1279
XapI	RAATTY	2 cut(s)	613, 756
XceI	RCATGY	2 cut(s)	749, 1055
XmnI	GAANNNNTTC	1 cut(s)	1224
XspI	CTAG	4 cut(s)	680, 819, 894, 1390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.