MD14G1222000.v1.1

Transmembrane Fragile-X-F protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
30371815 .. 30377426
5612 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1222000.v1.1.491

Sequence Viewer

Length: 1410 bp
ATGATGAACTGGTGGAGAGTGTTGAAGTCCGTGCAGGCCTTGGTGGCCCACAGCCTCCTCTTCTCCTTTACGCTACTGCTCGTCCTCAAGCTCGACGGCGTCGCCGCCTCCTACTCTTGGTGGATAATTTTCTTTCCACTTTGGATATTTCATGCAGTTGTTGCCCGAGGAAGATTCTCATTACCTGCTCCTTCCGTTCCACACAGTCGTCATTGGGCACCATGTCATGCTGTTGTCGCCACACCATTGCTAGTTGCATTTGAGTTGCTCCTTTGTATATATCTTGATAGTGTTTCCGTTCATGGTTTTGCAGCTGTCAACTTGAAGGTTGTCTTTCTACCCTTACTGGCCTTCGAAGTAATTATTCTAATTGACAATTTCAGGATGTGCAGGGCTCTAATGCCAGGGGATAATGAAGGCATTAGCGATGACACAATATGGGAGACACTTCCTCATTTCTGGGTAGCAATCTCCATGGTTTTCTTTGTTGCTGCTACAGTCTTCACTCTGCTTAAGTTATGCGGTGATGTAGGTGCTCTTGGTTGGTGGGATTTATTTATAAATTTTAGTATTGCAGAATGCTTTGCCTTTCTTGTCTGTACAAAGTGGTCCAATCCAGTGATTCATCAAAATTCTCATACAAGAGAAGCTACTTCATCTTCTACAACTATTAGATATCTTGACTGGAATAGCGGTTTAGTAGTTTCAGCAGAAGAGGATCAGAATCAAGATAAAATGTGTGGTCTGCAAGATATTGGTGGGCATCTTATGAAAATTCCCGTGATTGGCTTTCAAGTTCTCCTTTGTATGCGCCTTGCGGGAACCCCAGAAAATGCTAGACACATCCCACTTCCAGTTCTCTTCTCTCCTCTTTTTTTACTCCAAGGCGCTGGTGTACTATTTTCTGCATGTAGGTTGGTGGAGAAAATTGTACTTTTGTTGCGTAGTGGGGCTGGCACCGGATTATATTTTAGATTTTCTTCAAGAGCTCATGACTGCTTCGGGTTTTTGCACCATGGTTCTAGGCTACTGGGCTGGTGGTCGATAGATGAAGGAAGTCGAGAAGAGCATGCCAAACTGTTTCATGAGGGGGCATCAGGATACAACACTTTTTGCGGTTACCCACCTGAGATAGTGAAGAAAATGCCTAAGAAGGATCTCACTGAGGAGGTATGGAGACTTCAAGCGGCTCTTGGCGAACAGACAGAAATCACCAAATACAGCCAGCAGGAGTACGAAAGACTTCAAAATGAAAAAGTGTTGTGTCGCGTTTGCTTCGAGGGAGAGATTAGTGTGGTCCTGCTACCATGTCGGCATCGTGTCCTTTGCAGTTTCTGCTGTGACAGATGTAAAAAGTGCCCGATATGCCGCGAATCAATCGAGCAGCGCTTACCTGTGTATGATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

470

Amino Acids

53.06

Weight (kDa)

6.77

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_185A PF10269 29 - 294 1.5e-98 Transmembrane Fragile-X-F protein
zf-C3HC4_3 PF13920 419 - 462 1.9e-11 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 193
AccB1I GGYRCC 2 cut(s) 217, 956
AccII CGCG 2 cut(s) 1269, 1371
AciI CCGC 7 cut(s) 105, 522, 693, 818, 1116, 1187, 1369
AclWI GGATC 2 cut(s) 726, 1164
AcsI RAATTY 3 cut(s) 562, 631, 774
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 4 cut(s) 601, 897, 933, 1235
AfeI AGCGCT 1 cut(s) 1388
AfiI CCNNNNNNNGG 2 cut(s) 117, 785
AflII CTTAAG 1 cut(s) 512
AgsI TTSAA 6 cut(s) 25, 325, 794, 984, 1184, 1247
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 4 cut(s) 91, 314, 650, 989
AluI AGCT 4 cut(s) 91, 314, 650, 989
Alw21I GWGCWC 2 cut(s) 538, 991
Alw26I GTCTC 2 cut(s) 437, 1171
AlwI GGATC 2 cut(s) 726, 1164
AlwNI CAGNNNCTG 1 cut(s) 1335
Ama87I CYCGRG 1 cut(s) 165
Aor51HI AGCGCT 1 cut(s) 1388
AoxI GGCC 3 cut(s) 36, 45, 348
ApeKI GCWGC 3 cut(s) 311, 491, 1384
ApoI RAATTY 3 cut(s) 562, 631, 774
Asp700I GAANNNNTTC 1 cut(s) 1242
AspLEI GCGC 3 cut(s) 813, 890, 1389
AspS9I GGNCC 3 cut(s) 46, 609, 1297
AsuHPI GGTGA 2 cut(s) 536, 1204
AsuII TTCGAA 1 cut(s) 354
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 2 cut(s) 609, 1297
BaeGI GKGCMC 2 cut(s) 220, 1361
BanI GGYRCC 2 cut(s) 217, 956
BanII GRGCYC 2 cut(s) 397, 991
BarI GAAGNNNNNNTAC 2 cut(s) 1164, 1196
BbsI GAAGAC 1 cut(s) 493
Bbv12I GWGCWC 2 cut(s) 538, 991
BbvI GCAGC 3 cut(s) 323, 478, 1396
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 405
BciVI GTATCC 1 cut(s) 1094
BcoDI GTCTC 2 cut(s) 437, 1171
BfaI CTAG 3 cut(s) 251, 837, 1023
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 2 cut(s) 891, 1390
BfrI CTTAAG 1 cut(s) 512
BfuAI ACCTGC 1 cut(s) 193
BfuI GTATCC 1 cut(s) 1094
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 6 cut(s) 105, 312, 492, 1188, 1369, 1385
BlsI GCNGC 6 cut(s) 106, 313, 493, 1189, 1370, 1386
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 2 cut(s) 609, 1297
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 3 cut(s) 46, 609, 1297
BmiI GGNNCC 3 cut(s) 219, 823, 958
BmrFI CCNGG 1 cut(s) 405
BmrI ACTGGG 1 cut(s) 1040
BmsI GCATC 3 cut(s) 772, 1103, 1324
BmuI ACTGGG 1 cut(s) 1040
BpiI GAAGAC 1 cut(s) 493
Bpu14I TTCGAA 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 71
BsaBI GATNNNNATC 1 cut(s) 723
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 6 cut(s) 39, 166, 404, 474, 883, 1015
BsaWI WCCGGW 1 cut(s) 959
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 785
Bse1I ACTGG 6 cut(s) 14, 351, 617, 689, 854, 1035
Bse3DI GCAATG 1 cut(s) 245
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 6 cut(s) 39, 166, 404, 474, 883, 1015
BseGI GGATG 2 cut(s) 390, 843
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 2 cut(s) 117, 785
BseMI GCAATG 1 cut(s) 245
BseMII CTCAG 2 cut(s) 1119, 1155
BseNI ACTGG 6 cut(s) 14, 351, 617, 689, 854, 1035
BseRI GAGGAG 3 cut(s) 47, 858, 1181
BseSI GKGCMC 2 cut(s) 220, 1361
BseXI GCAGC 3 cut(s) 323, 478, 1396
BsgI GTGCAG 2 cut(s) 53, 409
Bsh1236I CGCG 2 cut(s) 1269, 1371
BshFI GGCC 3 cut(s) 38, 47, 350
BshNI GGYRCC 2 cut(s) 217, 956
BsiHKAI GWGCWC 2 cut(s) 538, 991
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 1 cut(s) 960
BslI CCNNNNNNNGG 2 cut(s) 117, 785
BsmAI GTCTC 2 cut(s) 437, 1171
BsmI GAATGC 1 cut(s) 584
BsnI GGCC 3 cut(s) 38, 47, 350
BsoBI CYCGRG 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 5 cut(s) 220, 397, 538, 991, 1361
Bsp1407I TGTACA 1 cut(s) 599
Bsp143I GATC 2 cut(s) 718, 1156
Bsp19I CCATGG 2 cut(s) 474, 1015
BspACI CCGC 7 cut(s) 105, 522, 693, 818, 1116, 1187, 1369
BspANI GGCC 3 cut(s) 38, 47, 350
BspCNI CTCAG 2 cut(s) 1120, 1156
BspFNI CGCG 2 cut(s) 1269, 1371
BspHI TCATGA 2 cut(s) 991, 1084
BspLI GGNNCC 3 cut(s) 219, 823, 958
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 2 cut(s) 726, 1164
BspQI GCTCTTC 1 cut(s) 1059
BspT104I TTCGAA 1 cut(s) 354
BspT107I GGYRCC 2 cut(s) 217, 956
BspTI CTTAAG 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 245
BsrGI TGTACA 1 cut(s) 599
BsrI ACTGG 6 cut(s) 14, 351, 617, 689, 854, 1035
BssECI CCNNGG 6 cut(s) 39, 166, 404, 474, 883, 1015
BssMI GATC 2 cut(s) 718, 1156
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 4 cut(s) 39, 474, 883, 1015
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 3 cut(s) 206, 499, 1080
Bst6I CTCTTC 4 cut(s) 65, 708, 866, 1059
BstACI GRCGYC 1 cut(s) 99
BstAFI CTTAAG 1 cut(s) 512
BstAPI GCANNNNNTGC 2 cut(s) 161, 1335
BstAUI TGTACA 1 cut(s) 599
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 4 cut(s) 36, 955, 1071, 1226
BstDEI CTNAG 3 cut(s) 1128, 1149, 1164
BstDSI CCRYGG 2 cut(s) 474, 1015
BstEII GGTNACC 1 cut(s) 1118
BstF5I GGATG 2 cut(s) 390, 843
BstFNI CGCG 2 cut(s) 1269, 1371
BstH2I RGCGCY 2 cut(s) 891, 1390
BstHHI GCGC 3 cut(s) 813, 890, 1389
BstKTI GATC 2 cut(s) 721, 1159
BstMAI GTCTC 2 cut(s) 437, 1171
BstMBI GATC 2 cut(s) 718, 1156
BstMWI GCNNNNNNNGC 5 cut(s) 44, 161, 236, 1335, 1365
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 2 cut(s) 912, 1073
BstPI GGTNACC 1 cut(s) 1118
BstSCI CCNGG 1 cut(s) 403
BstSFI CTRYAG 1 cut(s) 495
BstSLI GKGCMC 2 cut(s) 220, 1361
BstUI CGCG 2 cut(s) 1269, 1371
BstV1I GCAGC 3 cut(s) 323, 478, 1396
BstV2I GAAGAC 1 cut(s) 493
BstX2I RGATCY 1 cut(s) 1156
BstXI CCANNNNNNTGG 1 cut(s) 890
BstYI RGATCY 1 cut(s) 1156
BsuI GTATCC 1 cut(s) 1094
BsuRI GGCC 3 cut(s) 38, 47, 350
BtgI CCRYGG 2 cut(s) 474, 1015
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 390, 843
BtsIMutI CAGTG 2 cut(s) 624, 1161
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 4 cut(s) 36, 955, 1071, 1226
CaiI CAGNNNCTG 1 cut(s) 1335
CciI TCATGA 2 cut(s) 991, 1084
CfoI GCGC 3 cut(s) 813, 890, 1389
Cfr13I GGNCC 3 cut(s) 46, 609, 1297
CseI GACGC 1 cut(s) 88
Csp6I GTAC 4 cut(s) 600, 896, 932, 1234
CviQI GTAC 4 cut(s) 600, 896, 932, 1234
DdeI CTNAG 3 cut(s) 1128, 1149, 1164
DpnI GATC 2 cut(s) 720, 1158
DpnII GATC 2 cut(s) 718, 1156
Eam1104I CTCTTC 4 cut(s) 65, 708, 866, 1059
EarI CTCTTC 4 cut(s) 65, 708, 866, 1059
Ecl136II GAGCTC 1 cut(s) 989
Eco130I CCWWGG 4 cut(s) 39, 474, 883, 1015
Eco147I AGGCCT 1 cut(s) 38
Eco24I GRGCYC 2 cut(s) 397, 991
Eco32I GATATC 1 cut(s) 677
Eco47I GGWCC 2 cut(s) 609, 1297
Eco47III AGCGCT 1 cut(s) 1388
Eco53kI GAGCTC 1 cut(s) 989
Eco88I CYCGRG 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 1118
EcoICRI GAGCTC 1 cut(s) 989
EcoO65I GGTNACC 1 cut(s) 1118
EcoRII CCWGG 1 cut(s) 403
EcoRV GATATC 1 cut(s) 677
EcoT14I CCWWGG 4 cut(s) 39, 474, 883, 1015
EcoT38I GRGCYC 2 cut(s) 397, 991
ErhI CCWWGG 4 cut(s) 39, 474, 883, 1015
FalI AAGNNNNNCTT 6 cut(s) 317, 349, 786, 818, 1176, 1208
FauI CCCGC 1 cut(s) 811
Fnu4HI GCNGC 6 cut(s) 105, 312, 492, 1188, 1369, 1385
FokI GGATG 2 cut(s) 397, 830
FriOI GRGCYC 2 cut(s) 397, 991
Fsp4HI GCNGC 6 cut(s) 105, 312, 492, 1188, 1369, 1385
FspBI CTAG 3 cut(s) 251, 837, 1023
GlaI GCGC 3 cut(s) 812, 889, 1388
GluI GCNGC 6 cut(s) 105, 312, 492, 1188, 1369, 1385
HaeII RGCGCY 2 cut(s) 891, 1390
HaeIII GGCC 3 cut(s) 38, 47, 350
HapII CCGG 1 cut(s) 960
HgaI GACGC 1 cut(s) 88
HhaI GCGC 3 cut(s) 813, 890, 1389
Hin1I GRCGYC 1 cut(s) 99
Hin6I GCGC 3 cut(s) 811, 888, 1387
HinP1I GCGC 3 cut(s) 811, 888, 1387
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 4 cut(s) 174, 622, 724, 1373
HpaII CCGG 1 cut(s) 960
HphI GGTGA 2 cut(s) 536, 1204
Hpy166II GTNNAC 2 cut(s) 319, 896
Hpy188I TCNGA 1 cut(s) 723
Hpy188III TCNNGA 9 cut(s) 284, 382, 680, 728, 984, 992, 1061, 1085, 1098
Hpy8I GTNNAC 2 cut(s) 319, 896
Hpy99I CGWCG 2 cut(s) 98, 104
HpyAV CCTTC 6 cut(s) 201, 319, 361, 410, 1046, 1147
HpyCH4III ACNGT 3 cut(s) 206, 499, 1080
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 161, 236, 1335, 1365
HpyF3I CTNAG 3 cut(s) 1128, 1149, 1164
Hsp92I GRCGYC 1 cut(s) 99
HspAI GCGC 3 cut(s) 811, 888, 1387
Kzo9I GATC 2 cut(s) 718, 1156
LguI GCTCTTC 1 cut(s) 1059
LmnI GCTCC 2 cut(s) 193, 273
Lsp1109I GCAGC 3 cut(s) 323, 478, 1396
LweI GCATC 3 cut(s) 772, 1103, 1324
MaeI CTAG 3 cut(s) 251, 837, 1023
MaeIII GTNAC 2 cut(s) 1118, 1340
MalI GATC 2 cut(s) 720, 1158
MboI GATC 2 cut(s) 718, 1156
MboII GAAGA 9 cut(s) 52, 183, 493, 651, 725, 853, 972, 1076, 1150
MflI RGATCY 1 cut(s) 1156
MhlI GDGCHC 5 cut(s) 220, 397, 538, 991, 1361
MluCI AATT 8 cut(s) 126, 360, 369, 376, 562, 631, 774, 927
MroXI GAANNNNTTC 1 cut(s) 1242
MseI TTAA 1 cut(s) 513
MspA1I CMGCKG 1 cut(s) 314
MspCI CTTAAG 1 cut(s) 512
MspI CCGG 1 cut(s) 960
MspR9I CCNGG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 584
MvaI CCWGG 1 cut(s) 405
MvnI CGCG 2 cut(s) 1269, 1371
MwoI GCNNNNNNNGC 5 cut(s) 44, 161, 236, 1335, 1365
NcoI CCATGG 2 cut(s) 474, 1015
NdeII GATC 2 cut(s) 718, 1156
NlaIV GGNNCC 3 cut(s) 219, 823, 958
NmuCI GTSAC 1 cut(s) 1340
NspI RCATGY 2 cut(s) 912, 1073
NspV TTCGAA 1 cut(s) 354
PaeI GCATGC 1 cut(s) 1073
PagI TCATGA 2 cut(s) 991, 1084
PceI AGGCCT 1 cut(s) 38
PciSI GCTCTTC 1 cut(s) 1059
PctI GAATGC 1 cut(s) 584
PdmI GAANNNNTTC 1 cut(s) 1242
PfeI GAWTC 4 cut(s) 174, 622, 724, 1373
PflFI GACNNNGTC 1 cut(s) 98
PkrI GCNGC 6 cut(s) 106, 313, 493, 1189, 1370, 1386
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 991
Psp6I CCWGG 1 cut(s) 403
PspEI GGTNACC 1 cut(s) 1118
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 3 cut(s) 219, 823, 958
PspPI GGNCC 3 cut(s) 46, 609, 1297
PstNI CAGNNNCTG 1 cut(s) 1335
PsuI RGATCY 1 cut(s) 1156
PsyI GACNNNGTC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 4 cut(s) 601, 897, 933, 1235
RsaNI GTAC 4 cut(s) 600, 896, 932, 1234
SacI GAGCTC 1 cut(s) 991
SapI GCTCTTC 1 cut(s) 1059
SaqAI TTAA 1 cut(s) 513
SatI GCNGC 6 cut(s) 105, 312, 492, 1188, 1369, 1385
Sau3AI GATC 2 cut(s) 718, 1156
Sau96I GGNCC 3 cut(s) 46, 609, 1297
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 5 cut(s) 220, 397, 538, 991, 1361
SfaNI GCATC 3 cut(s) 772, 1103, 1324
SfcI CTRYAG 1 cut(s) 495
SfiI GGCCNNNNNGGCC 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 2 cut(s) 609, 1297
SmlI CTYRAG 2 cut(s) 86, 512
SmoI CTYRAG 2 cut(s) 86, 512
SphI GCATGC 1 cut(s) 1073
Sse9I AATT 8 cut(s) 126, 360, 369, 376, 562, 631, 774, 927
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 7 cut(s) 105, 522, 693, 818, 1116, 1187, 1369
SspMI CTAG 3 cut(s) 251, 837, 1023
SstI GAGCTC 1 cut(s) 991
StuI AGGCCT 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 403
StyI CCWWGG 4 cut(s) 39, 474, 883, 1015
TaaI ACNGT 3 cut(s) 206, 499, 1080
TaqI TCGA 6 cut(s) 93, 354, 1043, 1060, 1278, 1380
TasI AATT 8 cut(s) 126, 360, 369, 376, 562, 631, 774, 927
TatI WGTACW 3 cut(s) 599, 895, 931
TauI GCSGC 3 cut(s) 107, 1190, 1371
TfiI GAWTC 4 cut(s) 174, 622, 724, 1373
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 2 cut(s) 624, 1168
TseFI GTSAC 1 cut(s) 1340
TseI GCWGC 3 cut(s) 311, 491, 1384
Tsp45I GTSAC 1 cut(s) 1340
TspGWI ACGGA 3 cut(s) 19, 184, 286
TspRI CASTG 2 cut(s) 624, 1168
Tth111I GACNNNGTC 1 cut(s) 98
Vha464I CTTAAG 1 cut(s) 512
VpaK11BI GGWCC 2 cut(s) 609, 1297
XapI RAATTY 3 cut(s) 562, 631, 774
XceI RCATGY 2 cut(s) 912, 1073
XmnI GAANNNNTTC 1 cut(s) 1242
XspI CTAG 3 cut(s) 251, 837, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.