Rroxscaffold_3G00269460

Transmembrane Fragile-X-F protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
62328671 .. 62335780
7110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269460.1

Sequence Viewer

Length: 1518 bp
ATGATGAACTGGCGGAGAGTGTTGAAGTCCGTCCAGGCCTTAGCAGCCCACAGCCTGCTATTCACCTTCACGCTCTTGCTCGTTCTCAAGCTCGACCACATCGTCTCCTACTCTTGGTGGATAATTTTTTTTCCACTTTGGATATTTCATGCAGTTGTTGCCCGAGGAAGATTCTCACTACCCGCTCCATCAGTTCCACACAGTCGTCATTGGGCGCCATGTCATGCTGTTGTGGCCACACCATTGCTTATTGCATTTGAGTTGCTCCTCTGTATATATCTGGAAAGTCGTTATGGTATCCACCCATCTCCTCTTTTAACTTTAGTTTGTTTTTCAAAAAGACAATCACAAAATATTTGGGGACTGATACCAGCATTTCATGTGTGGGGAAATGCATGTAGAAGAGTTCACAGTTTTGCAGCTGTCAACTTAAAGGTTGTCTTTCTTCCCTTACTGGCATTTGAAGTAATTATTCTCATTGACAATTTCAGAATGTGTAAGGCTCTAATGCCAGGGGATGATGAAAACATAAATGATGAGGCAATATGGGAGACACTTCCTCATTTCTGGGTTGCAATCTCCATGGTTTTCTTTGTTGCTGCTACAGTCTTCACCATGCTCAAGTTATCTGGTCATGTAAATGCCCTTGGCTGGTGGGATTTATTCATAAACTTTAGTATTGCAGAGTGCTTTGCGTTTCTTGTCTGTACAAAGTGGTCTAATCCAGTAATTCATCGAAATTCCCAAATAAGAGTAGCTACTTCATCTTCCACAACTATTAGATATCTTGACTGGAACAGCGGTCTAGTAGTTTCTGCAGAAGAGGATCAGCATCAAGATAGAATGTGTGGTCTGCAAGACATTGGTGGGCATGTTATGAAAATTCCGGTGATTGGTTTTCAAGTTCTCCTTTGTATGCGCCTTGAGGGAACCCCCGATTGTGCTAGACATATCCCACTTCCGGTTCTATTCTCTCCTCTTTTTCTACTACAAGGTGTTGGTGTACTATTTGCTGCATCTAGATTGGTGGAGAAAATTGTACTTCTACTGCGTAGTGGAGCTGGCACAGGATTATATTTTAGATTTTCTTCCAGAGCACACGATTGCTTGGGGTTTTTGCACCATGGTTCCAGGCTACTTGGCTGGTGGTCAATAGATGAAGGAAGTTGTGAGGAACATGCCCGACTGTTTCATGAGGGGGCTTCAGGATACAACACTTTCTGTGGTTATCCACCTGAGATAGTGAAGAAAATGCCTAAAAAGGATCTCACTGAAGAGGTATGGAGACTTCAAGCAGCTCTTGGTGAACAGACAGAAATCACAAAATACAGTCAGCAGGAGTATGAAAGACTTCAAAATGAAAAAGTGTTATGCCGTGTTTGCTTTGAGGGAGAGATCAGTGTGGTCCTGCTACCATGTAGGCATCGTGTTCTTTGCAGTACGTGCTGTGACAAGTGTAAAAAATGCCCAATATGCCGTATTTCTATTGAGGAGCGCTTGCCTGTGTATGATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

505

Amino Acids

57.49

Weight (kDa)

8.16

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_185A PF10269 29 - 105 3e-28 Transmembrane Fragile-X-F protein
Tmemb_185A PF10269 137 - 330 7.9e-68 Transmembrane Fragile-X-F protein
zf-C3HC4_3 PF13920 455 - 498 3e-11 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 214
AccBSI CCGCTC 1 cut(s) 185
AciI CCGC 3 cut(s) 13, 183, 801
AclWI GGATC 2 cut(s) 834, 1272
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 2 cut(s) 739, 882
AcuI CTGAAG 2 cut(s) 1188, 1293
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 4 cut(s) 709, 1005, 1041, 1441
AfeI AGCGCT 1 cut(s) 1496
AfiI CCNNNNNNNGG 4 cut(s) 114, 651, 893, 961
AgsI TTSAA 6 cut(s) 25, 336, 464, 902, 1292, 1355
AjnI CCWGG 3 cut(s) 33, 511, 1130
AluBI AGCT 5 cut(s) 91, 422, 758, 1061, 1298
AluI AGCT 5 cut(s) 91, 422, 758, 1061, 1298
Alw21I GWGCWC 1 cut(s) 1099
Alw26I GTCTC 3 cut(s) 109, 545, 1279
AlwI GGATC 2 cut(s) 834, 1272
Ama87I CYCGRG 1 cut(s) 162
Aor51HI AGCGCT 1 cut(s) 1496
AoxI GGCC 2 cut(s) 36, 234
ApeKI GCWGC 5 cut(s) 44, 419, 599, 1013, 1295
ApoI RAATTY 2 cut(s) 739, 882
Asp700I GAANNNNTTC 1 cut(s) 1350
AspLEI GCGC 3 cut(s) 217, 921, 1497
AspS9I GGNCC 1 cut(s) 1405
AsuHPI GGTGA 4 cut(s) 55, 604, 901, 1316
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 1405
BalI TGGCCA 1 cut(s) 236
BanI GGYRCC 1 cut(s) 214
BarI GAAGNNNNNNTAC 2 cut(s) 1272, 1304
BbsI GAAGAC 1 cut(s) 601
Bbv12I GWGCWC 1 cut(s) 1099
BbvI GCAGC 5 cut(s) 56, 431, 586, 1000, 1307
BccI CCATC 2 cut(s) 196, 313
BceAI ACGGC 2 cut(s) 1359, 1461
BciT130I CCWGG 3 cut(s) 35, 513, 1132
BciVI GTATCC 2 cut(s) 308, 1202
BcoDI GTCTC 3 cut(s) 109, 545, 1279
BfaI CTAG 4 cut(s) 806, 945, 1020, 1516
BfmI CTRYAG 2 cut(s) 603, 816
BfoI RGCGCY 2 cut(s) 218, 1498
BfuI GTATCC 2 cut(s) 308, 1202
BisI GCNGC 5 cut(s) 45, 420, 600, 1014, 1296
BlsI GCNGC 5 cut(s) 46, 421, 601, 1015, 1297
Bme1390I CCNGG 3 cut(s) 35, 513, 1132
Bme18I GGWCC 1 cut(s) 1405
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 1405
BmiI GGNNCC 3 cut(s) 216, 931, 1129
BmrFI CCNGG 3 cut(s) 35, 513, 1132
BmsI GCATC 3 cut(s) 841, 1025, 1432
BpiI GAAGAC 1 cut(s) 601
Bpu10I CCTNAGC 1 cut(s) 40
BpuEI CTTGAG 3 cut(s) 71, 605, 944
BsaAI YACGTR 1 cut(s) 1443
BsaBI GATNNNNATC 1 cut(s) 831
BsaHI GRCGYC 1 cut(s) 215
BsaJI CCNNGG 5 cut(s) 163, 512, 582, 646, 1123
BsaWI WCCGGW 2 cut(s) 886, 961
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 651, 893, 961
Bse1I ACTGG 4 cut(s) 14, 459, 725, 797
Bse3DI GCAATG 1 cut(s) 242
Bse8I GATNNNNATC 1 cut(s) 831
BseBI CCWGG 3 cut(s) 35, 513, 1132
BseDI CCNNGG 5 cut(s) 163, 512, 582, 646, 1123
BseGI GGATG 1 cut(s) 523
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 4 cut(s) 114, 651, 893, 961
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 1227
BseNI ACTGG 4 cut(s) 14, 459, 725, 797
BseRI GAGGAG 4 cut(s) 257, 300, 966, 1505
BseXI GCAGC 5 cut(s) 56, 431, 586, 1000, 1307
BshFI GGCC 2 cut(s) 38, 236
BshNI GGYRCC 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 1099
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 887, 962
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 4 cut(s) 114, 651, 893, 961
BsmAI GTCTC 3 cut(s) 109, 545, 1279
BsmBI CGTCTC 1 cut(s) 109
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 2 cut(s) 38, 236
BsoBI CYCGRG 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 1099
Bsp1407I TGTACA 1 cut(s) 707
Bsp143I GATC 3 cut(s) 826, 1264, 1395
Bsp19I CCATGG 2 cut(s) 582, 1123
BspACI CCGC 3 cut(s) 13, 183, 801
BspANI GGCC 2 cut(s) 38, 236
BspCNI CTCAG 1 cut(s) 1228
BspHI TCATGA 1 cut(s) 1192
BspLI GGNNCC 3 cut(s) 216, 931, 1129
BspMAI CTGCAG 1 cut(s) 820
BspPI GGATC 2 cut(s) 834, 1272
BspT107I GGYRCC 1 cut(s) 214
BsrBI CCGCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 707
BsrI ACTGG 4 cut(s) 14, 459, 725, 797
BssECI CCNNGG 5 cut(s) 163, 512, 582, 646, 1123
BssMI GATC 3 cut(s) 826, 1264, 1395
BssNI GRCGYC 1 cut(s) 215
BssT1I CCWWGG 3 cut(s) 582, 646, 1123
Bst2UI CCWGG 3 cut(s) 35, 513, 1132
Bst4CI ACNGT 5 cut(s) 203, 413, 607, 1188, 1331
Bst6I CTCTTC 3 cut(s) 397, 816, 1269
BstACI GRCGYC 1 cut(s) 215
BstAPI GCANNNNNTGC 2 cut(s) 158, 1443
BstAUI TGTACA 1 cut(s) 707
BstBAI YACGTR 1 cut(s) 1443
BstC8I GCNNGC 3 cut(s) 56, 1063, 1499
BstDEI CTNAG 2 cut(s) 40, 1236
BstDSI CCRYGG 2 cut(s) 582, 1123
BstF5I GGATG 1 cut(s) 523
BstH2I RGCGCY 2 cut(s) 218, 1498
BstHHI GCGC 3 cut(s) 217, 921, 1497
BstKTI GATC 3 cut(s) 829, 1267, 1398
BstMAI GTCTC 3 cut(s) 109, 545, 1279
BstMBI GATC 3 cut(s) 826, 1264, 1395
BstMWI GCNNNNNNNGC 6 cut(s) 44, 158, 233, 1380, 1443, 1473
BstNI CCWGG 3 cut(s) 35, 513, 1132
BstNSI RCATGY 3 cut(s) 399, 875, 1181
BstSCI CCNGG 3 cut(s) 33, 511, 1130
BstSFI CTRYAG 2 cut(s) 603, 816
BstV1I GCAGC 5 cut(s) 56, 431, 586, 1000, 1307
BstV2I GAAGAC 1 cut(s) 601
BstX2I RGATCY 1 cut(s) 1264
BstYI RGATCY 1 cut(s) 1264
BsuI GTATCC 2 cut(s) 308, 1202
BsuRI GGCC 2 cut(s) 38, 236
BtgI CCRYGG 2 cut(s) 582, 1123
BtsCI GGATG 1 cut(s) 523
BtsIMutI CAGTG 2 cut(s) 1269, 1405
Cac8I GCNNGC 3 cut(s) 56, 1063, 1499
CciI TCATGA 1 cut(s) 1192
CfoI GCGC 3 cut(s) 217, 921, 1497
Cfr13I GGNCC 1 cut(s) 1405
Csp6I GTAC 4 cut(s) 708, 1004, 1040, 1440
CviQI GTAC 4 cut(s) 708, 1004, 1040, 1440
DdeI CTNAG 2 cut(s) 40, 1236
DinI GGCGCC 1 cut(s) 216
DpnI GATC 3 cut(s) 828, 1266, 1397
DpnII GATC 3 cut(s) 826, 1264, 1395
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 3 cut(s) 397, 816, 1269
EarI CTCTTC 3 cut(s) 397, 816, 1269
EciI GGCGGA 1 cut(s) 28
Eco130I CCWWGG 3 cut(s) 582, 646, 1123
Eco147I AGGCCT 1 cut(s) 38
Eco32I GATATC 1 cut(s) 785
Eco47I GGWCC 1 cut(s) 1405
Eco47III AGCGCT 1 cut(s) 1496
Eco57I CTGAAG 2 cut(s) 1188, 1293
Eco88I CYCGRG 1 cut(s) 162
EcoRII CCWGG 3 cut(s) 33, 511, 1130
EcoRV GATATC 1 cut(s) 785
EcoT14I CCWWGG 3 cut(s) 582, 646, 1123
EcoT22I ATGCAT 1 cut(s) 397
EgeI GGCGCC 1 cut(s) 216
EheI GGCGCC 1 cut(s) 216
ErhI CCWWGG 3 cut(s) 582, 646, 1123
Esp3I CGTCTC 1 cut(s) 109
FalI AAGNNNNNCTT 6 cut(s) 425, 457, 894, 926, 1284, 1316
FaqI GGGAC 1 cut(s) 375
FauI CCCGC 1 cut(s) 190
Fnu4HI GCNGC 5 cut(s) 45, 420, 600, 1014, 1296
FokI GGATG 1 cut(s) 530
Fsp4HI GCNGC 5 cut(s) 45, 420, 600, 1014, 1296
FspBI CTAG 4 cut(s) 806, 945, 1020, 1516
GlaI GCGC 3 cut(s) 216, 920, 1496
GluI GCNGC 5 cut(s) 45, 420, 600, 1014, 1296
HaeII RGCGCY 2 cut(s) 218, 1498
HaeIII GGCC 2 cut(s) 38, 236
HapII CCGG 2 cut(s) 887, 962
HhaI GCGC 3 cut(s) 217, 921, 1497
Hin1I GRCGYC 1 cut(s) 215
Hin6I GCGC 3 cut(s) 215, 919, 1495
HinP1I GCGC 3 cut(s) 215, 919, 1495
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 1 cut(s) 171
HpaII CCGG 2 cut(s) 887, 962
HphI GGTGA 4 cut(s) 55, 604, 901, 1316
Hpy166II GTNNAC 4 cut(s) 409, 427, 1004, 1307
Hpy188I TCNGA 1 cut(s) 491
Hpy188III TCNNGA 7 cut(s) 281, 788, 836, 1020, 1092, 1193, 1206
Hpy8I GTNNAC 4 cut(s) 409, 427, 1004, 1307
HpyAV CCTTC 2 cut(s) 76, 1154
HpyCH4III ACNGT 5 cut(s) 203, 413, 607, 1188, 1331
HpyCH4IV ACGT 1 cut(s) 1442
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 158, 233, 1380, 1443, 1473
HpyF3I CTNAG 2 cut(s) 40, 1236
HpySE526I ACGT 1 cut(s) 1442
Hsp92I GRCGYC 1 cut(s) 215
HspAI GCGC 3 cut(s) 215, 919, 1495
KasI GGCGCC 1 cut(s) 214
Kzo9I GATC 3 cut(s) 826, 1264, 1395
LmnI GCTCC 4 cut(s) 190, 270, 1058, 1492
Lsp1109I GCAGC 5 cut(s) 56, 431, 586, 1000, 1307
LweI GCATC 3 cut(s) 841, 1025, 1432
MaeI CTAG 4 cut(s) 806, 945, 1020, 1516
MaeII ACGT 1 cut(s) 1442
MaeIII GTNAC 1 cut(s) 1448
MalI GATC 3 cut(s) 828, 1266, 1397
MbiI CCGCTC 1 cut(s) 185
MboI GATC 3 cut(s) 826, 1264, 1395
MboII GAAGA 9 cut(s) 180, 414, 437, 601, 759, 833, 1080, 1258, 1286
MflI RGATCY 1 cut(s) 1264
MhlI GDGCHC 1 cut(s) 1099
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 7 cut(s) 123, 468, 484, 729, 739, 882, 1035
MluNI TGGCCA 1 cut(s) 236
Mly113I GGCGCC 1 cut(s) 215
Mox20I TGGCCA 1 cut(s) 236
Mph1103I ATGCAT 1 cut(s) 397
MroXI GAANNNNTTC 1 cut(s) 1350
MscI TGGCCA 1 cut(s) 236
MseI TTAA 2 cut(s) 317, 431
MslI CAYNNNNRTG 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 2 cut(s) 422, 801
MspI CCGG 2 cut(s) 887, 962
MspR9I CCNGG 3 cut(s) 35, 513, 1132
MvaI CCWGG 3 cut(s) 35, 513, 1132
MwoI GCNNNNNNNGC 6 cut(s) 44, 158, 233, 1380, 1443, 1473
NarI GGCGCC 1 cut(s) 215
NcoI CCATGG 2 cut(s) 582, 1123
NdeII GATC 3 cut(s) 826, 1264, 1395
NlaIV GGNNCC 3 cut(s) 216, 931, 1129
NmuCI GTSAC 1 cut(s) 1448
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 3 cut(s) 399, 875, 1181
PagI TCATGA 1 cut(s) 1192
PceI AGGCCT 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 1350
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 5 cut(s) 46, 421, 601, 1015, 1297
PluTI GGCGCC 1 cut(s) 218
Ppu21I YACGTR 1 cut(s) 1443
Psp6I CCWGG 3 cut(s) 33, 511, 1130
PspGI CCWGG 3 cut(s) 33, 511, 1130
PspN4I GGNNCC 3 cut(s) 216, 931, 1129
PspPI GGNCC 1 cut(s) 1405
PstI CTGCAG 1 cut(s) 820
PsuI RGATCY 1 cut(s) 1264
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 4 cut(s) 709, 1005, 1041, 1441
RsaNI GTAC 4 cut(s) 708, 1004, 1040, 1440
RseI CAYNNNNRTG 1 cut(s) 639
SaqAI TTAA 2 cut(s) 317, 431
SatI GCNGC 5 cut(s) 45, 420, 600, 1014, 1296
Sau3AI GATC 3 cut(s) 826, 1264, 1395
Sau96I GGNCC 1 cut(s) 1405
ScrFI CCNGG 3 cut(s) 35, 513, 1132
SduI GDGCHC 1 cut(s) 1099
SfaNI GCATC 3 cut(s) 841, 1025, 1432
SfcI CTRYAG 2 cut(s) 603, 816
SfoI GGCGCC 1 cut(s) 216
SinI GGWCC 1 cut(s) 1405
SmiMI CAYNNNNRTG 1 cut(s) 639
SmlI CTYRAG 3 cut(s) 86, 620, 923
SmoI CTYRAG 3 cut(s) 86, 620, 923
Sse9I AATT 7 cut(s) 123, 468, 484, 729, 739, 882, 1035
SseBI AGGCCT 1 cut(s) 38
SsiI CCGC 3 cut(s) 13, 183, 801
SspDI GGCGCC 1 cut(s) 214
SspI AATATT 1 cut(s) 355
SspMI CTAG 4 cut(s) 806, 945, 1020, 1516
StuI AGGCCT 1 cut(s) 38
StyD4I CCNGG 3 cut(s) 33, 511, 1130
StyI CCWWGG 3 cut(s) 582, 646, 1123
TaaI ACNGT 5 cut(s) 203, 413, 607, 1188, 1331
TaiI ACGT 1 cut(s) 1445
TaqI TCGA 2 cut(s) 93, 736
TasI AATT 7 cut(s) 123, 468, 484, 729, 739, 882, 1035
TatI WGTACW 3 cut(s) 707, 1003, 1039
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 2 cut(s) 317, 431
Tru9I TTAA 2 cut(s) 317, 431
TscAI CASTG 2 cut(s) 1276, 1405
TseFI GTSAC 1 cut(s) 1448
TseI GCWGC 5 cut(s) 44, 419, 599, 1013, 1295
Tsp45I GTSAC 1 cut(s) 1448
TspGWI ACGGA 1 cut(s) 19
TspRI CASTG 2 cut(s) 1276, 1405
VpaK11BI GGWCC 1 cut(s) 1405
XapI RAATTY 2 cut(s) 739, 882
XbaI TCTAGA 1 cut(s) 1019
XceI RCATGY 3 cut(s) 399, 875, 1181
XmnI GAANNNNTTC 1 cut(s) 1350
XspI CTAG 4 cut(s) 806, 945, 1020, 1516
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.