Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009000

Physical Location & Seq

Genomic Coordinates Forward (+)

22448725 .. 22452412

Gene Structure 3688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g18860.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGATGAACTGGTGGAGAGTGTTGAAGTCCGTGCAGGCCCTGGCGGCCCACAGCCTCCTCTTCTCCTTCACGCTACTGCTCGTTCTCAAGCTGGACGGCTTCGCCGCTTCCTACTCTTGGTGGATAATTTTCTTTCCACTTTGGATATTTCATGCCGTTGTTGCCCGAGGAAGATTCTCACTACCTGCTCCTTCAGTTCCACACAGTCGTCTTTGGGCACCATGTCATACTATTGCCGCCACACCATTGCTAGTTGCATTTGAGTTGCTCCTTTGTATATATCTTGAAAGTGTTTCCGTTGGTTTTGCAGCTGTCAACTTGAAGGTTGTCTTTCTACCCTTACTGGCATTCGAAATAATTATTCTAATTGACAATTTCAGGATGTGCAGGGCTCTAATGCCAGGGGATGATGAAAGCATGAGTGATGAGGCAATATGGGAGACACTTCCTCATTTCTGGGTAGCAATCTCCATGGTTTTCTTTGTTGCTGCTACAGTGTTCACCCTGCTTAAGTTATGCGGTGATGTAGGTGCTCTTGGTTGGTGGGACTTATTTATAAATTTTGGTATTGCAGAATGCTTTGCCTTTCTTGTCTGTACAAAGTGGTCTAATCCAGTGATTCATAGAAGTGCTCATTCAAGAGAAGCTACTTCATCTTCTACAACTATTAGATATCTTGACTGGAATAGCGGTTTAGTAGTTTCAGCAGAAGAGGATCGATCAATGGAGGCCCAATCCAAAATTTCAGGTATCAAGATAGAATGTGTGGTCTGCAAGATATTGGTGGGCATCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_185A zf-C3HC4_3

Protein Analysis

266

Amino Acids

29.72

Weight (kDa)

6.15

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18470 AT1G18470 AT1G73950 AT1G73950
fragaria_vesca	FvH4_5g12690 FvH4_5g12690 FvH4_5g12690 FvH4_5g12690 FvH4_5g12690
malus_domestica	MD06G1211300.v1.1 MD14G1222000.v1.1
prunus_persica	Prupe.5G217400_v2.0.a1
pyrus_communis	pycom06g18860 pycom14g18360
rosa_chinensis	RchiOBHm_Chr7g0184641
rosa_laevigata	RLG00000004963
rosa_multiflora	Rmu_ssc0000289.1_g000028
rosa_roxburghii	Rroxscaffold_3G00269460
rosa_samantha	Rh7BG068500 Rh7CG069300 Rh7DG068600
rosa_wichuraiana	Rw7G005650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	557
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	217
AciI	CCGC	5 cut(s)	44, 105, 237, 519, 690
AclWI	GGATC	1 cut(s)	723
AcsI	RAATTY	2 cut(s)	559, 741
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflII	CTTAAG	1 cut(s)	509
AgsI	TTSAA	4 cut(s)	25, 287, 322, 639
AjnI	CCWGG	2 cut(s)	39, 400
AluBI	AGCT	3 cut(s)	91, 311, 647
AluI	AGCT	3 cut(s)	91, 311, 647
Alw21I	GWGCWC	2 cut(s)	535, 634
Alw26I	GTCTC	1 cut(s)	434
AlwI	GGATC	1 cut(s)	723
AlwNI	CAGNNNCTG	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	3 cut(s)	36, 45, 729
ApeKI	GCWGC	2 cut(s)	308, 488
ApoI	RAATTY	2 cut(s)	559, 741
AspS9I	GGNCC	3 cut(s)	37, 46, 730
AsuHPI	GGTGA	2 cut(s)	493, 533
AsuII	TTCGAA	1 cut(s)	351
AvaI	CYCGRG	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	220
BanI	GGYRCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	394
Bbv12I	GWGCWC	2 cut(s)	535, 634
BbvI	GCAGC	2 cut(s)	320, 475
BceAI	ACGGC	2 cut(s)	112, 140
BciT130I	CCWGG	2 cut(s)	41, 402
BcoDI	GTCTC	1 cut(s)	434
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	1 cut(s)	492
BfrI	CTTAAG	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	193
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	5 cut(s)	45, 105, 237, 309, 489
BlsI	GCNGC	5 cut(s)	46, 106, 238, 310, 490
Bme1390I	CCNGG	2 cut(s)	41, 402
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	37, 46, 730
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	2 cut(s)	41, 402
Bpu14I	TTCGAA	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	71
Bsa29I	ATCGAT	1 cut(s)	718
BsaJI	CCNNGG	4 cut(s)	39, 166, 401, 471
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	4 cut(s)	14, 348, 614, 686
Bse3DI	GCAATG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	41, 402
BseCI	ATCGAT	1 cut(s)	718
BseDI	CCNNGG	4 cut(s)	39, 166, 401, 471
BseGI	GGATG	2 cut(s)	387, 412
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	1 cut(s)	245
BseNI	ACTGG	4 cut(s)	14, 348, 614, 686
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	320, 475
BsgI	GTGCAG	2 cut(s)	53, 406
BshFI	GGCC	3 cut(s)	38, 47, 731
BshNI	GGYRCC	1 cut(s)	217
BshVI	ATCGAT	1 cut(s)	718
BsiHKAI	GWGCWC	2 cut(s)	535, 634
BsiHKCI	CYCGRG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	560
BsmI	GAATGC	2 cut(s)	347, 581
BsnI	GGCC	3 cut(s)	38, 47, 731
BsoBI	CYCGRG	1 cut(s)	165
Bsp119I	TTCGAA	1 cut(s)	351
Bsp1286I	GDGCHC	4 cut(s)	220, 394, 535, 634
Bsp1407I	TGTACA	1 cut(s)	596
Bsp143I	GATC	2 cut(s)	715, 719
Bsp19I	CCATGG	1 cut(s)	471
BspACI	CCGC	5 cut(s)	44, 105, 237, 519, 690
BspANI	GGCC	3 cut(s)	38, 47, 731
BspDI	ATCGAT	1 cut(s)	718
BspLI	GGNNCC	1 cut(s)	219
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	723
BspT104I	TTCGAA	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	217
BspTI	CTTAAG	1 cut(s)	509
BsrDI	GCAATG	1 cut(s)	245
BsrGI	TGTACA	1 cut(s)	596
BsrI	ACTGG	4 cut(s)	14, 348, 614, 686
BssECI	CCNNGG	4 cut(s)	39, 166, 401, 471
BssMI	GATC	2 cut(s)	715, 719
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	2 cut(s)	41, 402
Bst4CI	ACNGT	2 cut(s)	206, 496
Bst6I	CTCTTC	2 cut(s)	65, 705
BstAFI	CTTAAG	1 cut(s)	509
BstAUI	TGTACA	1 cut(s)	596
BstBI	TTCGAA	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	2 cut(s)	387, 412
BstKTI	GATC	2 cut(s)	718, 722
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	2 cut(s)	715, 719
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 161
BstNI	CCWGG	2 cut(s)	41, 402
BstSCI	CCNGG	2 cut(s)	39, 400
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	320, 475
Bsu15I	ATCGAT	1 cut(s)	718
BsuRI	GGCC	3 cut(s)	38, 47, 731
BsuTUI	ATCGAT	1 cut(s)	718
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	387, 412
BtsIMutI	CAGTG	2 cut(s)	501, 621
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	40
Cfr13I	GGNCC	3 cut(s)	37, 46, 730
ClaI	ATCGAT	1 cut(s)	718
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	4 cut(s)	152, 222, 418, 472
CviJI	RGCY	9 cut(s)	38, 47, 54, 91, 99, 311, 392, 647, 731
CviKI_1	RGCY	9 cut(s)	38, 47, 54, 91, 99, 311, 392, 647, 731
CviQI	GTAC	1 cut(s)	597
DpnI	GATC	2 cut(s)	717, 721
DpnII	GATC	2 cut(s)	715, 719
Eam1104I	CTCTTC	2 cut(s)	65, 705
EarI	CTCTTC	2 cut(s)	65, 705
Eco130I	CCWWGG	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	394
Eco32I	GATATC	1 cut(s)	674
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	39, 400
EcoRV	GATATC	1 cut(s)	674
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	4 cut(s)	155, 225, 421, 475
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	4 cut(s)	151, 221, 417, 471
Fnu4HI	GCNGC	5 cut(s)	45, 105, 237, 309, 489
FokI	GGATG	2 cut(s)	394, 419
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	5 cut(s)	45, 105, 237, 309, 489
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	5 cut(s)	45, 105, 237, 309, 489
HaeIII	GGCC	3 cut(s)	38, 47, 731
Hin1II	CATG	4 cut(s)	155, 225, 421, 475
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	2 cut(s)	174, 619
HphI	GGTGA	2 cut(s)	493, 533
Hpy166II	GTNNAC	2 cut(s)	316, 501
Hpy188III	TCNNGA	5 cut(s)	284, 379, 639, 677, 754
Hpy8I	GTNNAC	2 cut(s)	316, 501
HpyAV	CCTTC	3 cut(s)	76, 201, 316
HpyCH4III	ACNGT	2 cut(s)	206, 496
HpyCH4V	TGCA	6 cut(s)	34, 257, 308, 387, 572, 774
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 161
Hsp92II	CATG	4 cut(s)	155, 225, 421, 475
Kzo9I	GATC	2 cut(s)	715, 719
LmnI	GCTCC	2 cut(s)	193, 273
Lsp1109I	GCAGC	2 cut(s)	320, 475
MaeI	CTAG	1 cut(s)	251
MalI	GATC	2 cut(s)	717, 721
MboI	GATC	2 cut(s)	715, 719
MboII	GAAGA	4 cut(s)	52, 183, 648, 722
MhlI	GDGCHC	4 cut(s)	220, 394, 535, 634
MluCI	AATT	6 cut(s)	126, 357, 366, 373, 559, 741
MnlI	CCTC	7 cut(s)	65, 68, 161, 421, 459, 706, 721
MseI	TTAA	1 cut(s)	510
MslI	CAYNNNNRTG	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	509
MspR9I	CCNGG	2 cut(s)	41, 402
Mva1269I	GAATGC	2 cut(s)	347, 581
MvaI	CCWGG	2 cut(s)	41, 402
MwoI	GCNNNNNNNGC	2 cut(s)	44, 161
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	2 cut(s)	715, 719
NlaIII	CATG	4 cut(s)	155, 225, 421, 475
NlaIV	GGNNCC	1 cut(s)	219
NspV	TTCGAA	1 cut(s)	351
PctI	GAATGC	2 cut(s)	347, 581
PfeI	GAWTC	2 cut(s)	174, 619
PkrI	GCNGC	5 cut(s)	46, 106, 238, 310, 490
PsiI	TTATAA	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	39, 400
PspGI	CCWGG	2 cut(s)	39, 400
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	3 cut(s)	37, 46, 730
PstNI	CAGNNNCTG	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	1 cut(s)	510
SatI	GCNGC	5 cut(s)	45, 105, 237, 309, 489
Sau3AI	GATC	2 cut(s)	715, 719
Sau96I	GGNCC	3 cut(s)	37, 46, 730
ScrFI	CCNGG	2 cut(s)	41, 402
SduI	GDGCHC	4 cut(s)	220, 394, 535, 634
SetI	ASST	7 cut(s)	93, 187, 313, 327, 532, 649, 751
SfcI	CTRYAG	1 cut(s)	492
SfiI	GGCCNNNNNGGCC	1 cut(s)	44
SfuI	TTCGAA	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	86, 509
SmoI	CTYRAG	2 cut(s)	86, 509
Sse9I	AATT	6 cut(s)	126, 357, 366, 373, 559, 741
SsiI	CCGC	5 cut(s)	44, 105, 237, 519, 690
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	39, 400
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	206, 496
TaqI	TCGA	2 cut(s)	351, 718
TasI	AATT	6 cut(s)	126, 357, 366, 373, 559, 741
TatI	WGTACW	1 cut(s)	596
TauI	GCSGC	3 cut(s)	47, 107, 239
TfiI	GAWTC	2 cut(s)	174, 619
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	2 cut(s)	501, 621
TseI	GCWGC	2 cut(s)	308, 488
TspDTI	ATGAA	5 cut(s)	20, 140, 426, 611, 642
TspGWI	ACGGA	2 cut(s)	19, 286
TspRI	CASTG	2 cut(s)	501, 621
Vha464I	CTTAAG	1 cut(s)	509
XapI	RAATTY	2 cut(s)	559, 741
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.