MD06G1211300.v1.1

Transmembrane Fragile-X-F protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
34395582 .. 34402257
6676 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1211300.v1.1.491

Sequence Viewer

Length: 1410 bp
ATGATGAACTGGCGGAGAGTGTTGAAGTCCGTGCAGGCCCTGGCGGCCCACAGCCTCCTCTTCTCCTTCACGCTACTGCTCGTTCTCAAGCTGGACGGCGTCGCCGCCTCCTACTCTTGGTGGATAATTTTCTTTCCACTTTGGATATTTCATGCAGTTGTTGCCCGAGGAAGATTCTCACTACCTGCTCCTTCAGTTCCACACAGTCGTCATTGGGCACCATGTCATGCTATTGCCGCTACACCATTGCTAGTTGCATTTGAGTTGCTCCTTTGTATATATCTTGAAAGTGTTTCCGTTCATGGTTTTGCAGCTGTCAACTTGAAGGTTGTCTTTCTACCCTTACTGGCATTCGAAATAATTATTCTAATTGACAATTTCAGGATGTGCAGGGCTCTAATGCCAGGGGATGATGAAAGCATGAGTGATGAGACAATATGGGAAACACTTCCTCATTTCTGGGTAGCAATCTCCATGGTTTTCTTTGTTGCTGCTACAGTGTTCACCCTGCTGAAGTTATGCGGTGATGTCGATGCTCTTGGTTGGTGGGATTTATTTATAAATTTTGGTATTGCAGAATGCTTTGCCTTTCTTGTCTGTACAAAGTGGTCTAATCCAGTGATTCATAGAAGTGCTCATTCAAGAGAAGCTACTTCATCTTCTACAACTATTAGATATCTTGACTGGAATAGCGGTTTAGTAGTTTCAGCAGAAGAGGATCAAAATCACGATAGAATGTGTGGTCTGCAAGATATTGGTGGGCATCTTATGAAAATTCCCGTGATTGGTTTTCAAGTTCTCCTTTGTATGCGCCTTGAGGGAACCCCAGCAAATGCTAGACATATCCCACTTCCAGTTCTCTTCTCTCCTCTATTTTTACTCCAAGGTGCCGGTGTACTATTGTCTGCATGTAGGTTGGTGGAGAAAATTGTCCTTTTGTTGCGTACTGAGGCTGGCACCGGATTATATTTTAGATTTTCTTCAAGAGCTCATGACTGCTTCGGGTTTTTGCACCGTGGTTCTAGGCTACTGGGCTGGTGGTCGATTGATGAAAGAAGTCCAGAAGAAGATGCCAGACTGTTTCATGAGGGGGCTTCAGGATATAACACTTTTTCTGGTTATCCACCTGAGATAGTGAAGAAAATGCCCAAGAAGGATCTCACTGAGGAGGTCTGGAGACTTCAAGCAGCTCTTGGTGAACAGACAGAAATCACCAAATACAGCCAGCAGGAGTACGAAAGACTTCAAAATGAAAAAGTGTTATGTCGCGTTTGCTTTGAGGGAGAGATCAGCGTGGTCCTGCTACCATGTCGACATCGCGTCCTTTGCAGTTCCTGCTCTAACAAGTGTAAAAAGTGCCCGATATGCCGTGAATCAATCGAGGAGCGCTTACCTGTCTATGATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

470

Amino Acids

53.12

Weight (kDa)

6.6

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_185A PF10269 29 - 294 1.4e-100 Transmembrane Fragile-X-F protein
zf-C3HC4_3 PF13920 419 - 462 3.2e-13 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
Acc36I ACCTGC 1 cut(s) 193
AccB1I GGYRCC 3 cut(s) 217, 887, 956
AccI GTMKAC 1 cut(s) 1312
AccII CGCG 2 cut(s) 1269, 1320
AciI CCGC 6 cut(s) 13, 44, 105, 237, 522, 693
AclWI GGATC 2 cut(s) 726, 1164
AcsI RAATTY 2 cut(s) 562, 774
AcuI CTGAAG 3 cut(s) 177, 533, 1080
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 4 cut(s) 601, 897, 946, 1235
AfeI AGCGCT 1 cut(s) 1388
AfiI CCNNNNNNNGG 2 cut(s) 117, 785
AgsI TTSAA 8 cut(s) 25, 287, 325, 642, 794, 984, 1184, 1247
AhdI GACNNNNNGTC 1 cut(s) 1319
AjnI CCWGG 2 cut(s) 39, 403
AluBI AGCT 5 cut(s) 91, 314, 650, 989, 1190
AluI AGCT 5 cut(s) 91, 314, 650, 989, 1190
Alw21I GWGCWC 2 cut(s) 637, 991
Alw26I GTCTC 2 cut(s) 425, 1171
AlwI GGATC 2 cut(s) 726, 1164
AlwNI CAGNNNCTG 2 cut(s) 40, 1335
Ama87I CYCGRG 1 cut(s) 165
Aor51HI AGCGCT 1 cut(s) 1388
AoxI GGCC 2 cut(s) 36, 45
ApeKI GCWGC 3 cut(s) 311, 491, 1187
ApoI RAATTY 2 cut(s) 562, 774
Asp700I GAANNNNTTC 2 cut(s) 447, 1242
AspLEI GCGC 2 cut(s) 813, 1389
AspS9I GGNCC 3 cut(s) 37, 46, 1297
AsuHPI GGTGA 4 cut(s) 496, 536, 1204, 1208
AsuII TTCGAA 1 cut(s) 354
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 1297
BaeGI GKGCMC 2 cut(s) 220, 1361
BanI GGYRCC 3 cut(s) 217, 887, 956
BanII GRGCYC 2 cut(s) 397, 991
Bbv12I GWGCWC 2 cut(s) 637, 991
BbvI GCAGC 3 cut(s) 323, 478, 1199
BceAI ACGGC 2 cut(s) 112, 1353
BciT130I CCWGG 2 cut(s) 41, 405
BcoDI GTCTC 2 cut(s) 425, 1171
BfaI CTAG 3 cut(s) 251, 837, 1023
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 1390
BfuAI ACCTGC 1 cut(s) 193
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 6 cut(s) 45, 105, 237, 312, 492, 1188
BlsI GCNGC 6 cut(s) 46, 106, 238, 313, 493, 1189
Bme1390I CCNGG 2 cut(s) 41, 405
Bme18I GGWCC 1 cut(s) 1297
BmeRI GACNNNNNGTC 1 cut(s) 1319
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 3 cut(s) 37, 46, 1297
BmiI GGNNCC 4 cut(s) 219, 823, 889, 958
BmrFI CCNGG 2 cut(s) 41, 405
BmrI ACTGGG 1 cut(s) 1040
BmsI GCATC 3 cut(s) 523, 772, 1060
BmuI ACTGGG 1 cut(s) 1040
BpmI CTGGAG 1 cut(s) 1195
Bpu14I TTCGAA 1 cut(s) 354
BpuEI CTTGAG 2 cut(s) 71, 836
BsaBI GATNNNNATC 1 cut(s) 723
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 6 cut(s) 39, 166, 404, 474, 883, 1015
BsaWI WCCGGW 1 cut(s) 959
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 785
Bse118I RCCGGY 1 cut(s) 890
Bse1I ACTGG 6 cut(s) 14, 351, 617, 689, 854, 1035
Bse3DI GCAATG 1 cut(s) 245
Bse8I GATNNNNATC 1 cut(s) 723
BseBI CCWGG 2 cut(s) 41, 405
BseDI CCNNGG 6 cut(s) 39, 166, 404, 474, 883, 1015
BseGI GGATG 2 cut(s) 390, 415
BseJI GATNNNNATC 1 cut(s) 723
BseLI CCNNNNNNNGG 2 cut(s) 117, 785
BseMI GCAATG 1 cut(s) 245
BseMII CTCAG 3 cut(s) 939, 1119, 1155
BseNI ACTGG 6 cut(s) 14, 351, 617, 689, 854, 1035
BseRI GAGGAG 4 cut(s) 47, 858, 1181, 1397
BseSI GKGCMC 2 cut(s) 220, 1361
BseXI GCAGC 3 cut(s) 323, 478, 1199
BseYI CCCAGC 1 cut(s) 826
BsgI GTGCAG 2 cut(s) 53, 409
Bsh1236I CGCG 2 cut(s) 1269, 1320
BshFI GGCC 2 cut(s) 38, 47
BshNI GGYRCC 3 cut(s) 217, 887, 956
BsiHKAI GWGCWC 2 cut(s) 637, 991
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 2 cut(s) 891, 960
BslI CCNNNNNNNGG 2 cut(s) 117, 785
BsmAI GTCTC 2 cut(s) 425, 1171
BsmI GAATGC 2 cut(s) 350, 584
BsnI GGCC 2 cut(s) 38, 47
BsoBI CYCGRG 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 5 cut(s) 220, 397, 637, 991, 1361
Bsp1407I TGTACA 1 cut(s) 599
Bsp143I GATC 3 cut(s) 718, 1156, 1287
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 6 cut(s) 13, 44, 105, 237, 522, 693
BspANI GGCC 2 cut(s) 38, 47
BspCNI CTCAG 3 cut(s) 940, 1120, 1156
BspFNI CGCG 2 cut(s) 1269, 1320
BspHI TCATGA 2 cut(s) 991, 1084
BspLI GGNNCC 4 cut(s) 219, 823, 889, 958
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 2 cut(s) 726, 1164
BspT104I TTCGAA 1 cut(s) 354
BspT107I GGYRCC 3 cut(s) 217, 887, 956
BsrDI GCAATG 1 cut(s) 245
BsrFI RCCGGY 1 cut(s) 890
BsrGI TGTACA 1 cut(s) 599
BsrI ACTGG 6 cut(s) 14, 351, 617, 689, 854, 1035
BssAI RCCGGY 1 cut(s) 890
BssECI CCNNGG 6 cut(s) 39, 166, 404, 474, 883, 1015
BssMI GATC 3 cut(s) 718, 1156, 1287
BssNI GRCGYC 1 cut(s) 99
BssT1I CCWWGG 2 cut(s) 474, 883
Bst2UI CCWGG 2 cut(s) 41, 405
Bst4CI ACNGT 4 cut(s) 206, 499, 1016, 1080
Bst6I CTCTTC 3 cut(s) 65, 708, 866
BstACI GRCGYC 1 cut(s) 99
BstAPI GCANNNNNTGC 2 cut(s) 161, 1335
BstAUI TGTACA 1 cut(s) 599
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 36, 955, 1226
BstDEI CTNAG 3 cut(s) 948, 1128, 1164
BstDSI CCRYGG 2 cut(s) 474, 1015
BstF5I GGATG 2 cut(s) 390, 415
BstFNI CGCG 2 cut(s) 1269, 1320
BstH2I RGCGCY 1 cut(s) 1390
BstHHI GCGC 2 cut(s) 813, 1389
BstKTI GATC 3 cut(s) 721, 1159, 1290
BstMAI GTCTC 2 cut(s) 425, 1171
BstMBI GATC 3 cut(s) 718, 1156, 1287
BstMWI GCNNNNNNNGC 6 cut(s) 44, 161, 236, 1326, 1335, 1365
BstNI CCWGG 2 cut(s) 41, 405
BstNSI RCATGY 1 cut(s) 912
BstSCI CCNGG 2 cut(s) 39, 403
BstSFI CTRYAG 1 cut(s) 495
BstSLI GKGCMC 2 cut(s) 220, 1361
BstUI CGCG 2 cut(s) 1269, 1320
BstV1I GCAGC 3 cut(s) 323, 478, 1199
BstX2I RGATCY 1 cut(s) 1156
BstYI RGATCY 1 cut(s) 1156
BsuRI GGCC 2 cut(s) 38, 47
BtgI CCRYGG 2 cut(s) 474, 1015
BtgZI GCGATG 1 cut(s) 1301
BtsCI GGATG 2 cut(s) 390, 415
BtsIMutI CAGTG 3 cut(s) 504, 624, 1161
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 3 cut(s) 36, 955, 1226
CaiI CAGNNNCTG 2 cut(s) 40, 1335
CciI TCATGA 2 cut(s) 991, 1084
CfoI GCGC 2 cut(s) 813, 1389
Cfr10I RCCGGY 1 cut(s) 890
Cfr13I GGNCC 3 cut(s) 37, 46, 1297
CseI GACGC 2 cut(s) 88, 1309
Csp6I GTAC 4 cut(s) 600, 896, 945, 1234
CviQI GTAC 4 cut(s) 600, 896, 945, 1234
DdeI CTNAG 3 cut(s) 948, 1128, 1164
DpnI GATC 3 cut(s) 720, 1158, 1289
DpnII GATC 3 cut(s) 718, 1156, 1287
DriI GACNNNNNGTC 1 cut(s) 1319
Eam1104I CTCTTC 3 cut(s) 65, 708, 866
Eam1105I GACNNNNNGTC 1 cut(s) 1319
EarI CTCTTC 3 cut(s) 65, 708, 866
EciI GGCGGA 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 989
Eco130I CCWWGG 2 cut(s) 474, 883
Eco24I GRGCYC 2 cut(s) 397, 991
Eco32I GATATC 1 cut(s) 677
Eco47I GGWCC 1 cut(s) 1297
Eco47III AGCGCT 1 cut(s) 1388
Eco53kI GAGCTC 1 cut(s) 989
Eco57I CTGAAG 3 cut(s) 177, 533, 1080
Eco88I CYCGRG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 989
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 39, 403
EcoRV GATATC 1 cut(s) 677
EcoT14I CCWWGG 2 cut(s) 474, 883
EcoT38I GRGCYC 2 cut(s) 397, 991
ErhI CCWWGG 2 cut(s) 474, 883
FalI AAGNNNNNCTT 6 cut(s) 317, 349, 786, 818, 1176, 1208
FblI GTMKAC 1 cut(s) 1312
Fnu4HI GCNGC 6 cut(s) 45, 105, 237, 312, 492, 1188
FokI GGATG 2 cut(s) 397, 422
FriOI GRGCYC 2 cut(s) 397, 991
Fsp4HI GCNGC 6 cut(s) 45, 105, 237, 312, 492, 1188
FspBI CTAG 3 cut(s) 251, 837, 1023
GlaI GCGC 2 cut(s) 812, 1388
GluI GCNGC 6 cut(s) 45, 105, 237, 312, 492, 1188
GsaI CCCAGC 1 cut(s) 830
GsuI CTGGAG 1 cut(s) 1195
HaeII RGCGCY 1 cut(s) 1390
HaeIII GGCC 2 cut(s) 38, 47
HapII CCGG 2 cut(s) 891, 960
HgaI GACGC 2 cut(s) 88, 1309
HhaI GCGC 2 cut(s) 813, 1389
Hin1I GRCGYC 1 cut(s) 99
Hin6I GCGC 2 cut(s) 811, 1387
HinP1I GCGC 2 cut(s) 811, 1387
HincII GTYRAC 2 cut(s) 319, 1313
HindII GTYRAC 2 cut(s) 319, 1313
HinfI GANTC 3 cut(s) 174, 622, 1373
HpaII CCGG 2 cut(s) 891, 960
HphI GGTGA 4 cut(s) 496, 536, 1204, 1208
Hpy166II GTNNAC 5 cut(s) 319, 504, 896, 1199, 1313
Hpy8I GTNNAC 5 cut(s) 319, 504, 896, 1199, 1313
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 4 cut(s) 76, 201, 319, 1147
HpyCH4III ACNGT 4 cut(s) 206, 499, 1016, 1080
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 161, 236, 1326, 1335, 1365
HpyF3I CTNAG 3 cut(s) 948, 1128, 1164
Hsp92I GRCGYC 1 cut(s) 99
HspAI GCGC 2 cut(s) 811, 1387
Kzo9I GATC 3 cut(s) 718, 1156, 1287
LmnI GCTCC 3 cut(s) 193, 273, 1384
Lsp1109I GCAGC 3 cut(s) 323, 478, 1199
LweI GCATC 3 cut(s) 523, 772, 1060
MaeI CTAG 3 cut(s) 251, 837, 1023
MalI GATC 3 cut(s) 720, 1158, 1289
MboI GATC 3 cut(s) 718, 1156, 1287
MboII GAAGA 9 cut(s) 52, 183, 651, 725, 853, 972, 1076, 1079, 1150
MflI RGATCY 1 cut(s) 1156
MhlI GDGCHC 5 cut(s) 220, 397, 637, 991, 1361
MluCI AATT 7 cut(s) 126, 360, 369, 376, 562, 774, 927
MroXI GAANNNNTTC 2 cut(s) 447, 1242
MslI CAYNNNNRTG 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 2 cut(s) 891, 960
MspR9I CCNGG 2 cut(s) 41, 405
Mva1269I GAATGC 2 cut(s) 350, 584
MvaI CCWGG 2 cut(s) 41, 405
MvnI CGCG 2 cut(s) 1269, 1320
MwoI GCNNNNNNNGC 6 cut(s) 44, 161, 236, 1326, 1335, 1365
NcoI CCATGG 1 cut(s) 474
NdeII GATC 3 cut(s) 718, 1156, 1287
NlaIV GGNNCC 4 cut(s) 219, 823, 889, 958
NspI RCATGY 1 cut(s) 912
NspV TTCGAA 1 cut(s) 354
PagI TCATGA 2 cut(s) 991, 1084
PctI GAATGC 2 cut(s) 350, 584
PdmI GAANNNNTTC 2 cut(s) 447, 1242
PfeI GAWTC 3 cut(s) 174, 622, 1373
PflFI GACNNNGTC 1 cut(s) 98
PkrI GCNGC 6 cut(s) 46, 106, 238, 313, 493, 1189
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 991
Psp6I CCWGG 2 cut(s) 39, 403
PspFI CCCAGC 1 cut(s) 826
PspGI CCWGG 2 cut(s) 39, 403
PspN4I GGNNCC 4 cut(s) 219, 823, 889, 958
PspPI GGNCC 3 cut(s) 37, 46, 1297
PstNI CAGNNNCTG 2 cut(s) 40, 1335
PsuI RGATCY 1 cut(s) 1156
PsyI GACNNNGTC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 4 cut(s) 601, 897, 946, 1235
RsaNI GTAC 4 cut(s) 600, 896, 945, 1234
RseI CAYNNNNRTG 1 cut(s) 630
SacI GAGCTC 1 cut(s) 991
SalI GTCGAC 1 cut(s) 1311
SatI GCNGC 6 cut(s) 45, 105, 237, 312, 492, 1188
Sau3AI GATC 3 cut(s) 718, 1156, 1287
Sau96I GGNCC 3 cut(s) 37, 46, 1297
ScrFI CCNGG 2 cut(s) 41, 405
SduI GDGCHC 5 cut(s) 220, 397, 637, 991, 1361
SfaNI GCATC 3 cut(s) 523, 772, 1060
SfcI CTRYAG 1 cut(s) 495
SfiI GGCCNNNNNGGCC 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 354
SinI GGWCC 1 cut(s) 1297
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 2 cut(s) 86, 815
SmoI CTYRAG 2 cut(s) 86, 815
Sse9I AATT 7 cut(s) 126, 360, 369, 376, 562, 774, 927
SsiI CCGC 6 cut(s) 13, 44, 105, 237, 522, 693
SspMI CTAG 3 cut(s) 251, 837, 1023
SstI GAGCTC 1 cut(s) 991
StyD4I CCNGG 2 cut(s) 39, 403
StyI CCWWGG 2 cut(s) 474, 883
TaaI ACNGT 4 cut(s) 206, 499, 1016, 1080
TaqI TCGA 5 cut(s) 354, 531, 1043, 1312, 1380
TasI AATT 7 cut(s) 126, 360, 369, 376, 562, 774, 927
TatI WGTACW 2 cut(s) 599, 895
TauI GCSGC 3 cut(s) 47, 107, 239
TfiI GAWTC 3 cut(s) 174, 622, 1373
TscAI CASTG 3 cut(s) 504, 624, 1168
TseI GCWGC 3 cut(s) 311, 491, 1187
TspGWI ACGGA 2 cut(s) 19, 286
TspRI CASTG 3 cut(s) 504, 624, 1168
Tth111I GACNNNGTC 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 1297
XapI RAATTY 2 cut(s) 562, 774
XceI RCATGY 1 cut(s) 912
XmiI GTMKAC 1 cut(s) 1312
XmnI GAANNNNTTC 2 cut(s) 447, 1242
XspI CTAG 3 cut(s) 251, 837, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.