RLG00000004963

Transmembrane Fragile-X-F protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
64002179 .. 64010152
7974 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004963

Sequence Viewer

Length: 1641 bp
ATGAACTGGCGGAGAGTGTTGAAGTCCGTCCAGGCCTTAGCGGCCCACAGCCTGCTATTCACCTTCACGCTCTTGCTGGTTCTCAAGCTCGACCACATCGCCTCCTACTCTTGGTGGATAATTTTTTTTCCACTTTGGATATTTCATGCAGTTGTTGCCCGAGGAAGATTCTCACTACCCGCTCCATCAGTTCCACACAGTCGTCATTGGGCGCCATGTCATGCTGTTGTGGCCACACCATTGCTTATTGCATTTGAGTTGCTTCTCTGTATATATCTTGAAAGTCGTTACGTTCACAGTTTTGCAGCTGTCAACTTAAAGGTTGTCTTTCTTCCCTTACTGGCATTCGAAGTAATTATTCTAATTGACAATTTCAGAATGTGTAAGGCTCTAATGCCAGGGGATGATGAAAACATGAATGATGAGGCAATATGGGAGACACTTCCTCATTTCTGGGTTGCAATCTCCATGGTTTTCTTTGTTGCTGCTACAGTCTTCACCATGCTCAAGTTATCTGGTCATGTAAATGCCCTTGGTTGGTGGGATTTATTTATAAACTTTAGTATTGCAGAGTGCTTTGCCTTTCTTGTCTGTAAAAAGTGGTCTAATCCAGTAATTCATCGAAATTCCCGAATAAGAGTAGCTACTTCATCTTCTACAACTATTAGATATCTTGACTGGAACAGCGGTCTAGTAGTTTCTGCAGAAGAGGATCAGCATCAAGATAGAATGTGTGGTCTGCAAGACATTGGTGGGCATGTTATGAAAATTCCGGTGATTGGTTTTCAAGTTCTCCTTTGTATGCGCCTTGAGGGAACCCCCGATCGTGCTAGACATATCCCACTTCCGGTTCTATTCTCTCCTCTTTTTCTACTACAAGGTGTTGGTGTACTATTTGCTGCATCTAGGTTGGTGGAGAAAATTGTTCTTCTACTGCGTAGTGGAGCTGGCACAGGATTATATTTTAGATTTTCTTCCAGAGCACACGATTGCTTGGGGTTTTTGCACCATGGTTCCAGGCTACTTGGCTGGTGGTCAATAGATGAAGGAAGTTGTGAGGAACATGCCCGACTGTTTCATGAGGGGGCTTCAGGATACAACACTTTCTGTGGTTATCCACCTGAGATAGTGAAGAAAATGCCTAAAAAGGATCTCACTGAAGAGGTATGGAGACTTCAAGCAGCTCTTGGTGAACAGACAGAAATCACAAAATACAGTCAGCAGGAGTATGAAAGACTTCAAAATGAAAAAGTGTTATGTCGTGTTTGCTTTGAGGGAGATATCAGTGTGGTCCTGCTACCATGTAGGCATCGTGTTCTTTGCAGTACCTGCTGTGACAAGTGTAAAAAATGCCCAATATGCCGTATTTCTATTGAGGAGCGCTTACCTGTGGAGAGAGTAACAAGTTGGAAGTTATCAGATGAGTTGAATAGAAAAATATGTGACAATGTGACATGGTATTCAAAGAGTTTGAGACCCATTTGCTTTCGGCCAATTGGGTGTCTATATCTCGCTGATCTGGATTGGTTCTGCGCAAATTGGGTTCTGGGTTTTCTAATTCAGGCTATGGTTTACTGTTTAAGGGAAGAAAACCCCACAAGTTTAACTGGAAAAGTCTGGCATTTGTGGTTTGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

547

Amino Acids

62.68

Weight (kDa)

7.96

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tmemb_185A PF10269 28 - 292 6.4e-101 Transmembrane Fragile-X-F protein
zf-C3HC4_3 PF13920 417 - 460 5.8e-11 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 554
Acc16I TGCGCA 1 cut(s) 1534
Acc36I ACCTGC 1 cut(s) 1337
AccB1I GGYRCC 1 cut(s) 211
AccBSI CCGCTC 1 cut(s) 182
AciI CCGC 4 cut(s) 10, 41, 180, 687
AclWI GGATC 2 cut(s) 720, 1158
AcoI YGGCCR 2 cut(s) 231, 1490
AcsI RAATTY 2 cut(s) 625, 768
AcuI CTGAAG 2 cut(s) 1074, 1179
AcyI GRCGYC 1 cut(s) 212
AfaI GTAC 2 cut(s) 891, 1327
AfeI AGCGCT 1 cut(s) 1382
AfiI CCNNNNNNNGG 4 cut(s) 111, 537, 779, 847
AgsI TTSAA 8 cut(s) 22, 281, 788, 1178, 1241, 1429, 1464, 1634
AjnI CCWGG 3 cut(s) 30, 397, 1016
AluBI AGCT 5 cut(s) 88, 308, 644, 947, 1184
AluI AGCT 5 cut(s) 88, 308, 644, 947, 1184
Alw21I GWGCWC 1 cut(s) 985
Alw26I GTCTC 3 cut(s) 431, 1165, 1468
AlwI GGATC 2 cut(s) 720, 1158
AlwNI CAGNNNCTG 1 cut(s) 1329
Ama87I CYCGRG 1 cut(s) 159
Aor51HI AGCGCT 1 cut(s) 1382
AoxI GGCC 4 cut(s) 33, 42, 231, 1490
ApeKI GCWGC 4 cut(s) 305, 485, 899, 1181
ApoI RAATTY 2 cut(s) 625, 768
Asp700I GAANNNNTTC 1 cut(s) 1236
AspLEI GCGC 4 cut(s) 214, 807, 1383, 1535
AspS9I GGNCC 2 cut(s) 43, 1291
AsuHPI GGTGA 4 cut(s) 52, 490, 787, 1202
AsuII TTCGAA 1 cut(s) 348
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 1 cut(s) 1291
BalI TGGCCA 1 cut(s) 233
BanI GGYRCC 1 cut(s) 211
BarI GAAGNNNNNNTAC 2 cut(s) 1158, 1190
BbsI GAAGAC 1 cut(s) 487
Bbv12I GWGCWC 1 cut(s) 985
BbvI GCAGC 4 cut(s) 317, 472, 886, 1193
BccI CCATC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 1347
BciT130I CCWGG 3 cut(s) 32, 399, 1018
BciVI GTATCC 1 cut(s) 1088
BcoDI GTCTC 3 cut(s) 431, 1165, 1468
BfaI CTAG 3 cut(s) 692, 831, 906
BfmI CTRYAG 2 cut(s) 489, 702
BfoI RGCGCY 2 cut(s) 215, 1384
BfuAI ACCTGC 1 cut(s) 1337
BfuI GTATCC 1 cut(s) 1088
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 5 cut(s) 42, 306, 486, 900, 1182
BlsI GCNGC 5 cut(s) 43, 307, 487, 901, 1183
Bme1390I CCNGG 3 cut(s) 32, 399, 1018
Bme18I GGWCC 1 cut(s) 1291
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 2 cut(s) 43, 1291
BmiI GGNNCC 3 cut(s) 213, 817, 1015
BmrFI CCNGG 3 cut(s) 32, 399, 1018
BmsI GCATC 3 cut(s) 727, 911, 1318
BpiI GAAGAC 1 cut(s) 487
Bpu10I CCTNAGC 1 cut(s) 37
Bpu14I TTCGAA 1 cut(s) 348
BpuEI CTTGAG 3 cut(s) 68, 491, 830
BsaBI GATNNNNATC 1 cut(s) 717
BsaHI GRCGYC 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 1468
BsaJI CCNNGG 5 cut(s) 160, 398, 468, 532, 1009
BsaWI WCCGGW 2 cut(s) 772, 847
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 537, 779, 847
Bse1I ACTGG 5 cut(s) 11, 345, 611, 683, 1612
Bse3DI GCAATG 1 cut(s) 239
Bse8I GATNNNNATC 1 cut(s) 717
BseBI CCWGG 3 cut(s) 32, 399, 1018
BseDI CCNNGG 5 cut(s) 160, 398, 468, 532, 1009
BseGI GGATG 1 cut(s) 409
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 4 cut(s) 111, 537, 779, 847
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 1113
BseNI ACTGG 5 cut(s) 11, 345, 611, 683, 1612
BseRI GAGGAG 2 cut(s) 852, 1391
BseXI GCAGC 4 cut(s) 317, 472, 886, 1193
Bsh1285I CGRYCG 1 cut(s) 826
BshFI GGCC 4 cut(s) 35, 44, 233, 1492
BshNI GGYRCC 1 cut(s) 211
BsiEI CGRYCG 1 cut(s) 826
BsiHKAI GWGCWC 1 cut(s) 985
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 2 cut(s) 773, 848
BslI CCNNNNNNNGG 4 cut(s) 111, 537, 779, 847
BsmAI GTCTC 3 cut(s) 431, 1165, 1468
BsmI GAATGC 1 cut(s) 344
BsnI GGCC 4 cut(s) 35, 44, 233, 1492
Bso31I GGTCTC 1 cut(s) 1468
BsoBI CYCGRG 1 cut(s) 159
Bsp119I TTCGAA 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 985
Bsp143I GATC 4 cut(s) 712, 823, 1150, 1516
Bsp19I CCATGG 2 cut(s) 468, 1009
BspACI CCGC 4 cut(s) 10, 41, 180, 687
BspANI GGCC 4 cut(s) 35, 44, 233, 1492
BspCNI CTCAG 1 cut(s) 1114
BspHI TCATGA 1 cut(s) 1078
BspLI GGNNCC 3 cut(s) 213, 817, 1015
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 1337
BspPI GGATC 2 cut(s) 720, 1158
BspT104I TTCGAA 1 cut(s) 348
BspT107I GGYRCC 1 cut(s) 211
BspTNI GGTCTC 1 cut(s) 1468
BsrBI CCGCTC 1 cut(s) 182
BsrDI GCAATG 1 cut(s) 239
BsrI ACTGG 5 cut(s) 11, 345, 611, 683, 1612
BssECI CCNNGG 5 cut(s) 160, 398, 468, 532, 1009
BssMI GATC 4 cut(s) 712, 823, 1150, 1516
BssNI GRCGYC 1 cut(s) 212
BssT1I CCWWGG 3 cut(s) 468, 532, 1009
Bst2UI CCWGG 3 cut(s) 32, 399, 1018
Bst4CI ACNGT 6 cut(s) 200, 299, 493, 1074, 1217, 1577
Bst6I CTCTTC 2 cut(s) 702, 1155
BstACI GRCGYC 1 cut(s) 212
BstAPI GCANNNNNTGC 2 cut(s) 155, 1329
BstBI TTCGAA 1 cut(s) 348
BstC8I GCNNGC 2 cut(s) 53, 949
BstDEI CTNAG 2 cut(s) 37, 1122
BstDSI CCRYGG 2 cut(s) 468, 1009
BstF5I GGATG 1 cut(s) 409
BstH2I RGCGCY 2 cut(s) 215, 1384
BstHHI GCGC 4 cut(s) 214, 807, 1383, 1535
BstKTI GATC 4 cut(s) 715, 826, 1153, 1519
BstMAI GTCTC 3 cut(s) 431, 1165, 1468
BstMBI GATC 4 cut(s) 712, 823, 1150, 1516
BstMCI CGRYCG 1 cut(s) 826
BstMWI GCNNNNNNNGC 5 cut(s) 41, 155, 230, 1329, 1359
BstNI CCWGG 3 cut(s) 32, 399, 1018
BstNSI RCATGY 2 cut(s) 761, 1067
BstSCI CCNGG 3 cut(s) 30, 397, 1016
BstSFI CTRYAG 2 cut(s) 489, 702
BstV1I GCAGC 4 cut(s) 317, 472, 886, 1193
BstV2I GAAGAC 1 cut(s) 487
BstX2I RGATCY 1 cut(s) 1150
BstYI RGATCY 1 cut(s) 1150
BsuI GTATCC 1 cut(s) 1088
BsuRI GGCC 4 cut(s) 35, 44, 233, 1492
BtgI CCRYGG 2 cut(s) 468, 1009
BtgZI GCGATG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 1155, 1291
BveI ACCTGC 1 cut(s) 1337
Cac8I GCNNGC 2 cut(s) 53, 949
CaiI CAGNNNCTG 1 cut(s) 1329
CciI TCATGA 1 cut(s) 1078
CfoI GCGC 4 cut(s) 214, 807, 1383, 1535
Cfr13I GGNCC 2 cut(s) 43, 1291
Csp6I GTAC 2 cut(s) 890, 1326
CviQI GTAC 2 cut(s) 890, 1326
DdeI CTNAG 2 cut(s) 37, 1122
DinI GGCGCC 1 cut(s) 213
DpnI GATC 4 cut(s) 714, 825, 1152, 1518
DpnII GATC 4 cut(s) 712, 823, 1150, 1516
EaeI YGGCCR 2 cut(s) 231, 1490
Eam1104I CTCTTC 2 cut(s) 702, 1155
EarI CTCTTC 2 cut(s) 702, 1155
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 3 cut(s) 468, 532, 1009
Eco147I AGGCCT 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 1468
Eco32I GATATC 2 cut(s) 671, 1282
Eco47I GGWCC 1 cut(s) 1291
Eco47III AGCGCT 1 cut(s) 1382
Eco57I CTGAAG 2 cut(s) 1074, 1179
Eco88I CYCGRG 1 cut(s) 159
EcoRII CCWGG 3 cut(s) 30, 397, 1016
EcoRV GATATC 2 cut(s) 671, 1282
EcoT14I CCWWGG 3 cut(s) 468, 532, 1009
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
ErhI CCWWGG 3 cut(s) 468, 532, 1009
FalI AAGNNNNNCTT 6 cut(s) 311, 343, 780, 812, 1170, 1202
FauI CCCGC 1 cut(s) 187
Fnu4HI GCNGC 5 cut(s) 42, 306, 486, 900, 1182
FokI GGATG 1 cut(s) 416
Fsp4HI GCNGC 5 cut(s) 42, 306, 486, 900, 1182
FspBI CTAG 3 cut(s) 692, 831, 906
FspI TGCGCA 1 cut(s) 1534
GlaI GCGC 4 cut(s) 213, 806, 1382, 1534
GluI GCNGC 5 cut(s) 42, 306, 486, 900, 1182
HaeII RGCGCY 2 cut(s) 215, 1384
HaeIII GGCC 4 cut(s) 35, 44, 233, 1492
HapII CCGG 2 cut(s) 773, 848
HhaI GCGC 4 cut(s) 214, 807, 1383, 1535
Hin1I GRCGYC 1 cut(s) 212
Hin6I GCGC 4 cut(s) 212, 805, 1381, 1533
HinP1I GCGC 4 cut(s) 212, 805, 1381, 1533
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 1 cut(s) 168
HpaII CCGG 2 cut(s) 773, 848
HphI GGTGA 4 cut(s) 52, 490, 787, 1202
Hpy166II GTNNAC 5 cut(s) 295, 313, 890, 1193, 1573
Hpy188I TCNGA 2 cut(s) 377, 1420
Hpy188III TCNNGA 8 cut(s) 278, 630, 674, 722, 978, 1079, 1092, 1520
Hpy8I GTNNAC 5 cut(s) 295, 313, 890, 1193, 1573
HpyAV CCTTC 2 cut(s) 73, 1040
HpyCH4III ACNGT 6 cut(s) 200, 299, 493, 1074, 1217, 1577
HpyCH4IV ACGT 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 155, 230, 1329, 1359
HpyF3I CTNAG 2 cut(s) 37, 1122
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 212
HspAI GCGC 4 cut(s) 212, 805, 1381, 1533
KasI GGCGCC 1 cut(s) 211
Kzo9I GATC 4 cut(s) 712, 823, 1150, 1516
LmnI GCTCC 3 cut(s) 187, 944, 1378
Lsp1109I GCAGC 4 cut(s) 317, 472, 886, 1193
LweI GCATC 3 cut(s) 727, 911, 1318
MaeI CTAG 3 cut(s) 692, 831, 906
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 5 cut(s) 287, 1334, 1399, 1442, 1450
MalI GATC 4 cut(s) 714, 825, 1152, 1518
MbiI CCGCTC 1 cut(s) 182
MboI GATC 4 cut(s) 712, 823, 1150, 1516
MfeI CAATTG 1 cut(s) 1494
MflI RGATCY 1 cut(s) 1150
MhlI GDGCHC 1 cut(s) 985
MlsI TGGCCA 1 cut(s) 233
MluNI TGGCCA 1 cut(s) 233
Mly113I GGCGCC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 1388
Mox20I TGGCCA 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 1236
MscI TGGCCA 1 cut(s) 233
MseI TTAA 3 cut(s) 317, 1580, 1604
MslI CAYNNNNRTG 1 cut(s) 525
Msp20I TGGCCA 1 cut(s) 233
MspA1I CMGCKG 2 cut(s) 308, 687
MspI CCGG 2 cut(s) 773, 848
MspR9I CCNGG 3 cut(s) 32, 399, 1018
MunI CAATTG 1 cut(s) 1494
Mva1269I GAATGC 1 cut(s) 344
MvaI CCWGG 3 cut(s) 32, 399, 1018
MwoI GCNNNNNNNGC 5 cut(s) 41, 155, 230, 1329, 1359
NarI GGCGCC 1 cut(s) 212
NcoI CCATGG 2 cut(s) 468, 1009
NdeII GATC 4 cut(s) 712, 823, 1150, 1516
NlaIV GGNNCC 3 cut(s) 213, 817, 1015
NmuCI GTSAC 3 cut(s) 1334, 1442, 1450
NsbI TGCGCA 1 cut(s) 1534
NspI RCATGY 2 cut(s) 761, 1067
NspV TTCGAA 1 cut(s) 348
PagI TCATGA 1 cut(s) 1078
PceI AGGCCT 1 cut(s) 35
PcsI WCGNNNNNNNCGW 1 cut(s) 628
PctI GAATGC 1 cut(s) 344
PdmI GAANNNNTTC 1 cut(s) 1236
PfeI GAWTC 1 cut(s) 168
PkrI GCNGC 5 cut(s) 43, 307, 487, 901, 1183
Ple19I CGATCG 1 cut(s) 826
PluTI GGCGCC 1 cut(s) 215
PsiI TTATAA 1 cut(s) 554
Psp6I CCWGG 3 cut(s) 30, 397, 1016
PspGI CCWGG 3 cut(s) 30, 397, 1016
PspN4I GGNNCC 3 cut(s) 213, 817, 1015
PspPI GGNCC 2 cut(s) 43, 1291
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 1329
PsuI RGATCY 1 cut(s) 1150
PvuI CGATCG 1 cut(s) 826
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 2 cut(s) 891, 1327
RsaNI GTAC 2 cut(s) 890, 1326
RseI CAYNNNNRTG 1 cut(s) 525
SaqAI TTAA 3 cut(s) 317, 1580, 1604
SatI GCNGC 5 cut(s) 42, 306, 486, 900, 1182
Sau3AI GATC 4 cut(s) 712, 823, 1150, 1516
Sau96I GGNCC 2 cut(s) 43, 1291
ScrFI CCNGG 3 cut(s) 32, 399, 1018
SduI GDGCHC 1 cut(s) 985
SfaNI GCATC 3 cut(s) 727, 911, 1318
SfcI CTRYAG 2 cut(s) 489, 702
SfiI GGCCNNNNNGGCC 1 cut(s) 41
SfoI GGCGCC 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 348
SinI GGWCC 1 cut(s) 1291
SmiMI CAYNNNNRTG 1 cut(s) 525
SmlI CTYRAG 3 cut(s) 83, 506, 809
SmoI CTYRAG 3 cut(s) 83, 506, 809
SseBI AGGCCT 1 cut(s) 35
SsiI CCGC 4 cut(s) 10, 41, 180, 687
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 3 cut(s) 692, 831, 906
StuI AGGCCT 1 cut(s) 35
StyD4I CCNGG 3 cut(s) 30, 397, 1016
StyI CCWWGG 3 cut(s) 468, 532, 1009
TaaI ACNGT 6 cut(s) 200, 299, 493, 1074, 1217, 1577
TaiI ACGT 1 cut(s) 294
TaqI TCGA 3 cut(s) 90, 348, 622
TatI WGTACW 1 cut(s) 889
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 3 cut(s) 317, 1580, 1604
Tru9I TTAA 3 cut(s) 317, 1580, 1604
TscAI CASTG 2 cut(s) 1162, 1291
TseFI GTSAC 3 cut(s) 1334, 1442, 1450
TseI GCWGC 4 cut(s) 305, 485, 899, 1181
Tsp45I GTSAC 3 cut(s) 1334, 1442, 1450
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 2 cut(s) 1162, 1291
VpaK11BI GGWCC 1 cut(s) 1291
XapI RAATTY 2 cut(s) 625, 768
XceI RCATGY 2 cut(s) 761, 1067
XmnI GAANNNNTTC 1 cut(s) 1236
XspI CTAG 3 cut(s) 692, 831, 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.